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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072275 ID=TCONS_00072275|Name=TCONS_00072275|organism=Clytia hemisphaerica|type=transcript|length=929bp
TCGAAAAGTTAGAGAAAGTTGTGTCGGGTATGCATATCTGCAATCATGAG
ACTTTCGATTGTGAAATATGCGTCCTTGCCAAGCAATGTAACCAGAGAAA
CCGTGAACCTGATATTCGTGCAACCGAACCGTTTGAATTGGTCCACACAG
ACCTTGCTGGCCCCATCGAACCAGCAGCAAAGGATGGTTATCGATACGCC
ATAATATTTACTGATGATTTTTCCGGTAACCTCTTTACATACTTCTTGAA
AGCAAAGTCTGATGCACCAAAAGCAGTTAAGAAATTTCTAGCTGACATTG
CACCTTTCGGTAAGGTgaaaacttttaactttttcgAAGATGTATTTCCT
GTAGGTGATGTCAAGAAAATGAGAAGTGATAATGGAGGAGAGtatatttc
aaaggaatttCGTGAAATTCTAGTTAAACACTCTATCAAGCATGAGTTAT
CCGCACCGTACTCCCCACATCAAAACGGAACGGCTGAACGCAATTGGCGC
ACACTCTTCGAAATGGGAAGATCCATGCTTATCGAGTCCAATCTACCCAA
GTACCTCTGGACGTACGCCATAATGGCTGCCACCCACATTCGTAATCGTT
GTTACGTCAAACGAATCCAGAATACCCCATTCGGTCTTATCACTGGAACG
AAGCCAAATCTTTCCAATATGCACATCTTCGGTACCGTGTGCTATGCATT
TCTACAACCGGAACAGAAAAAGTTAGACCCTCGCTCAAAAAAGGGTCACT
TCATCGGGTATGACAAAGAAAGCCCGTCCTATCTGGTATATTTTCCAGAT
GACAGAACTGTGAAGAAGTACAGGGAGGTAAAATTCACAGATCAGTTCAG
CACATCAGAACCACCAACCGTACCAAACCATTTGTTTAACAACCCAGAAC
CGGAAGACCAGTCAACAACCAATACGGAN Run BLAST on NCBI protein sequence of TCONS_00072275-protein >TCONS_00072275-protein ID=TCONS_00072275-protein|Name=TCONS_00072275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
EKLEKVVSGMHICNHETFDCEICVLAKQCNQRNREPDIRATEPFELVHTD
LAGPIEPAAKDGYRYAIIFTDDFSGNLFTYFLKAKSDAPKAVKKFLADIA
PFGKVKTFNFFEDVFPVGDVKKMRSDNGGEYISKEFREILVKHSIKHELS
APYSPHQNGTAERNWRTLFEMGRSMLIESNLPKYLWTYAIMAATHIRNRC
YVKRIQNTPFGLITGTKPNLSNMHIFGTVCYAFLQPEQKKLDPRSKKGHF
IGYDKESPSYLVYFPDDRTVKKYREVKFTDQFSTSEPPTVPNHLFNNPEP
EDQSTTNTX Run BLAST on NCBI transcript from alignment at scaffold_72:168389..169317 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072275 ID=TCONS_00072275|Name=TCONS_00072275|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at scaffold_72:168389..169317 (Clytia hemisphaerica)
NTCCGTATTGGTTGTTGACTGGTCTTCCGGTTCTGGGTTGTTAAACAAAT
GGTTTGGTACGGTTGGTGGTTCTGATGTGCTGAACTGATCTGTGAATTTT
ACCTCCCTGTACTTCTTCACAGTTCTGTCATCTGGAAAATATACCAGATA
GGACGGGCTTTCTTTGTCATACCCGATGAAGTGACCCTTTTTTGAGCGAG
GGTCTAACTTTTTCTGTTCCGGTTGTAGAAATGCATAGCACACGGTACCG
AAGATGTGCATATTGGAAAGATTTGGCTTCGTTCCAGTGATAAGACCGAA
TGGGGTATTCTGGATTCGTTTGACGTAACAACGATTACGAATGTGGGTGG
CAGCCATTATGGCGTACGTCCAGAGGTACTTGGGTAGATTGGACTCGATA
AGCATGGATCTTCCCATTTCGAAGAGTGTGCGCCAATTGCGTTCAGCCGT
TCCGTTTTGATGTGGGGAGTACGGTGCGGATAACTCATGCTTGATAGAGT
GTTTAACTAGAATTTCACGaaattcctttgaaatataCTCTCCTCCATTA
TCACTTCTCATTTTCTTGACATCACCTACAGGAAATACATCTTcgaaaaa
gttaaaagttttcACCTTACCGAAAGGTGCAATGTCAGCTAGAAATTTCT
TAACTGCTTTTGGTGCATCAGACTTTGCTTTCAAGAAGTATGTAAAGAGG
TTACCGGAAAAATCATCAGTAAATATTATGGCGTATCGATAACCATCCTT
TGCTGCTGGTTCGATGGGGCCAGCAAGGTCTGTGTGGACCAATTCAAACG
GTTCGGTTGCACGAATATCAGGTTCACGGTTTCTCTGGTTACATTGCTTG
GCAAGGACGCATATTTCACAATCGAAAGTCTCATGATTGCAGATATGCAT
ACCCGACACAACTTTCTCTAACTTTTCGA Coding sequence (CDS) from alignment at scaffold_72:168389..169317 >TCONS_00072275 ID=TCONS_00072275|Name=TCONS_00072275|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_72:168389..169317 (Clytia hemisphaerica)
NTCCGTATTGGTTGTTGACTGGTCTTCCGGTTCTGGGTTGTTAAACAAAT
GGTTTGGTACGGTTGGTGGTTCTGATGTGCTGAACTGATCTGTGAATTTT
ACCTCCCTGTACTTCTTCACAGTTCTGTCATCTGGAAAATATACCAGATA
GGACGGGCTTTCTTTGTCATACCCGATGAAGTGACCCTTTTTTGAGCGAG
GGTCTAACTTTTTCTGTTCCGGTTGTAGAAATGCATAGCACACGGTACCG
AAGATGTGCATATTGGAAAGATTTGGCTTCGTTCCAGTGATAAGACCGAA
TGGGGTATTCTGGATTCGTTTGACGTAACAACGATTACGAATGTGGGTGG
CAGCCATTATGGCGTACGTCCAGAGGTACTTGGGTAGATTGGACTCGATA
AGCATGGATCTTCCCATTTCGAAGAGTGTGCGCCAATTGCGTTCAGCCGT
TCCGTTTTGATGTGGGGAGTACGGTGCGGATAACTCATGCTTGATAGAGT
GTTTAACTAGAATTTCACGaaattcctttgaaatataCTCTCCTCCATTA
TCACTTCTCATTTTCTTGACATCACCTACAGGAAATACATCTTcgaaaaa
gttaaaagttttcACCTTACCGAAAGGTGCAATGTCAGCTAGAAATTTCT
TAACTGCTTTTGGTGCATCAGACTTTGCTTTCAAGAAGTATGTAAAGAGG
TTACCGGAAAAATCATCAGTAAATATTATGGCGTATCGATAACCATCCTT
TGCTGCTGGTTCGATGGGGCCAGCAAGGTCTGTGTGGACCAATTCAAACG
GTTCGGTTGCACGAATATCAGGTTCACGGTTTCTCTGGTTACATTGCTTG
GCAAGGACGCATATTTCACAATCGAAAGTCTCATGATTGCAGATATGCAT
ACCCGACACAACTTTCTCTAACTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072275-exon-scaffold_72-1491911889:168389..169317 | TCONS_00072275-exon-scaffold_72-1491911889:168389..169317 | Clytia hemisphaerica | exon |
| TCONS_00072275-exon-scaffold_72-1510915933:168389..169317 | TCONS_00072275-exon-scaffold_72-1510915933:168389..169317 | Clytia hemisphaerica | exon |
| TCONS_00072275-exon-scaffold_72-1575043694:168389..169317 | TCONS_00072275-exon-scaffold_72-1575043694:168389..169317 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_72 | supercontig | scaffold_72:168389..169317 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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