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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072275 ID=TCONS_00072275|Name=TCONS_00072275|organism=Clytia hemisphaerica|type=transcript|length=929bp TCGAAAAGTTAGAGAAAGTTGTGTCGGGTATGCATATCTGCAATCATGAG ACTTTCGATTGTGAAATATGCGTCCTTGCCAAGCAATGTAACCAGAGAAA CCGTGAACCTGATATTCGTGCAACCGAACCGTTTGAATTGGTCCACACAG ACCTTGCTGGCCCCATCGAACCAGCAGCAAAGGATGGTTATCGATACGCC ATAATATTTACTGATGATTTTTCCGGTAACCTCTTTACATACTTCTTGAA AGCAAAGTCTGATGCACCAAAAGCAGTTAAGAAATTTCTAGCTGACATTG CACCTTTCGGTAAGGTgaaaacttttaactttttcgAAGATGTATTTCCT GTAGGTGATGTCAAGAAAATGAGAAGTGATAATGGAGGAGAGtatatttc aaaggaatttCGTGAAATTCTAGTTAAACACTCTATCAAGCATGAGTTAT CCGCACCGTACTCCCCACATCAAAACGGAACGGCTGAACGCAATTGGCGC ACACTCTTCGAAATGGGAAGATCCATGCTTATCGAGTCCAATCTACCCAA GTACCTCTGGACGTACGCCATAATGGCTGCCACCCACATTCGTAATCGTT GTTACGTCAAACGAATCCAGAATACCCCATTCGGTCTTATCACTGGAACG AAGCCAAATCTTTCCAATATGCACATCTTCGGTACCGTGTGCTATGCATT TCTACAACCGGAACAGAAAAAGTTAGACCCTCGCTCAAAAAAGGGTCACT TCATCGGGTATGACAAAGAAAGCCCGTCCTATCTGGTATATTTTCCAGAT GACAGAACTGTGAAGAAGTACAGGGAGGTAAAATTCACAGATCAGTTCAG CACATCAGAACCACCAACCGTACCAAACCATTTGTTTAACAACCCAGAAC CGGAAGACCAGTCAACAACCAATACGGAN Run BLAST on NCBI protein sequence of TCONS_00072275-protein >TCONS_00072275-protein ID=TCONS_00072275-protein|Name=TCONS_00072275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
EKLEKVVSGMHICNHETFDCEICVLAKQCNQRNREPDIRATEPFELVHTD LAGPIEPAAKDGYRYAIIFTDDFSGNLFTYFLKAKSDAPKAVKKFLADIA PFGKVKTFNFFEDVFPVGDVKKMRSDNGGEYISKEFREILVKHSIKHELS APYSPHQNGTAERNWRTLFEMGRSMLIESNLPKYLWTYAIMAATHIRNRC YVKRIQNTPFGLITGTKPNLSNMHIFGTVCYAFLQPEQKKLDPRSKKGHF IGYDKESPSYLVYFPDDRTVKKYREVKFTDQFSTSEPPTVPNHLFNNPEP EDQSTTNTX Run BLAST on NCBI transcript from alignment at scaffold_72:168389..169317 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072275 ID=TCONS_00072275|Name=TCONS_00072275|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at scaffold_72:168389..169317 (Clytia hemisphaerica) NTCCGTATTGGTTGTTGACTGGTCTTCCGGTTCTGGGTTGTTAAACAAAT
GGTTTGGTACGGTTGGTGGTTCTGATGTGCTGAACTGATCTGTGAATTTT
ACCTCCCTGTACTTCTTCACAGTTCTGTCATCTGGAAAATATACCAGATA
GGACGGGCTTTCTTTGTCATACCCGATGAAGTGACCCTTTTTTGAGCGAG
GGTCTAACTTTTTCTGTTCCGGTTGTAGAAATGCATAGCACACGGTACCG
AAGATGTGCATATTGGAAAGATTTGGCTTCGTTCCAGTGATAAGACCGAA
TGGGGTATTCTGGATTCGTTTGACGTAACAACGATTACGAATGTGGGTGG
CAGCCATTATGGCGTACGTCCAGAGGTACTTGGGTAGATTGGACTCGATA
AGCATGGATCTTCCCATTTCGAAGAGTGTGCGCCAATTGCGTTCAGCCGT
TCCGTTTTGATGTGGGGAGTACGGTGCGGATAACTCATGCTTGATAGAGT
GTTTAACTAGAATTTCACGaaattcctttgaaatataCTCTCCTCCATTA
TCACTTCTCATTTTCTTGACATCACCTACAGGAAATACATCTTcgaaaaa
gttaaaagttttcACCTTACCGAAAGGTGCAATGTCAGCTAGAAATTTCT
TAACTGCTTTTGGTGCATCAGACTTTGCTTTCAAGAAGTATGTAAAGAGG
TTACCGGAAAAATCATCAGTAAATATTATGGCGTATCGATAACCATCCTT
TGCTGCTGGTTCGATGGGGCCAGCAAGGTCTGTGTGGACCAATTCAAACG
GTTCGGTTGCACGAATATCAGGTTCACGGTTTCTCTGGTTACATTGCTTG
GCAAGGACGCATATTTCACAATCGAAAGTCTCATGATTGCAGATATGCAT
ACCCGACACAACTTTCTCTAACTTTTCGA Coding sequence (CDS) from alignment at scaffold_72:168389..169317 >TCONS_00072275 ID=TCONS_00072275|Name=TCONS_00072275|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_72:168389..169317 (Clytia hemisphaerica) NTCCGTATTGGTTGTTGACTGGTCTTCCGGTTCTGGGTTGTTAAACAAAT GGTTTGGTACGGTTGGTGGTTCTGATGTGCTGAACTGATCTGTGAATTTT ACCTCCCTGTACTTCTTCACAGTTCTGTCATCTGGAAAATATACCAGATA GGACGGGCTTTCTTTGTCATACCCGATGAAGTGACCCTTTTTTGAGCGAG GGTCTAACTTTTTCTGTTCCGGTTGTAGAAATGCATAGCACACGGTACCG AAGATGTGCATATTGGAAAGATTTGGCTTCGTTCCAGTGATAAGACCGAA TGGGGTATTCTGGATTCGTTTGACGTAACAACGATTACGAATGTGGGTGG CAGCCATTATGGCGTACGTCCAGAGGTACTTGGGTAGATTGGACTCGATA AGCATGGATCTTCCCATTTCGAAGAGTGTGCGCCAATTGCGTTCAGCCGT TCCGTTTTGATGTGGGGAGTACGGTGCGGATAACTCATGCTTGATAGAGT GTTTAACTAGAATTTCACGaaattcctttgaaatataCTCTCCTCCATTA TCACTTCTCATTTTCTTGACATCACCTACAGGAAATACATCTTcgaaaaa gttaaaagttttcACCTTACCGAAAGGTGCAATGTCAGCTAGAAATTTCT TAACTGCTTTTGGTGCATCAGACTTTGCTTTCAAGAAGTATGTAAAGAGG TTACCGGAAAAATCATCAGTAAATATTATGGCGTATCGATAACCATCCTT TGCTGCTGGTTCGATGGGGCCAGCAAGGTCTGTGTGGACCAATTCAAACG GTTCGGTTGCACGAATATCAGGTTCACGGTTTCTCTGGTTACATTGCTTG GCAAGGACGCATATTTCACAATCGAAAGTCTCATGATTGCAGATATGCAT ACCCGACACAACTTTCTCTAACTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072275-exon-scaffold_72-1491911889:168389..169317 | TCONS_00072275-exon-scaffold_72-1491911889:168389..169317 | Clytia hemisphaerica | exon |
TCONS_00072275-exon-scaffold_72-1510915933:168389..169317 | TCONS_00072275-exon-scaffold_72-1510915933:168389..169317 | Clytia hemisphaerica | exon |
TCONS_00072275-exon-scaffold_72-1575043694:168389..169317 | TCONS_00072275-exon-scaffold_72-1575043694:168389..169317 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_72 | supercontig | scaffold_72:168389..169317 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0015074 | DNA integration |
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0015074 |
DNA integration |
molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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