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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072274 ID=TCONS_00072274|Name=TCONS_00072274|organism=Clytia hemisphaerica|type=transcript|length=1852bp NNTACCCGTGAGAGAAAACAACCTGAGCGTTACGGAGACCCTGTGAACTC TGAACATTTAGATCTCTATGATTGTATCAACCATGTCAATGGACCACCCA CCCTCCATGAGGCTATCAACGGAAATCAGTCAAAGCAATGGCAGTCGGCC ATGGAAGCAAAAATCAAAACGTTAAAATCGAACGAAACCTTCACCCTTAC AGAGTTACCAGATGGCAAACAAACAGTTGGAGGTAAATGGGTGTACACGA TCAAAGGGGACCCAGAAACCCCCATCTTCAAAGCTCGCTACGTAGCAAAA GGCTATACCCAGAAAGAAGGTATTGATTATGCAGAGACATTCTCACCAAC AGTATGGATGGAATCTGTTAGAATCTTGACACAATTAGCTATTCAGAATG ATTGGATGATGCACCAATCGAATGTGATGTTTATGTTGAACAACCTGAAG GCTTCAAAGTAAATGGTGAGAAGCTAGTGTGGAAACTTAACAAATCGCTC TATGGATTGAAACAAAGCGGACGGAGCTGGAACTGTCTTCTCCAAGAATT CCTAAGTGAACTTAATTTCAAACAGTCATCTGCCGACCCatgtttattct acaaaaccgaGAAATCCGAAACAGTCATTTTACTAATATGGGTTGACGAT ATCATCATTGCCTCCAGTTCAGCAGTCTCAATGAAATCGATCAAATCGCA ACTCAGCGCAAAGTTCAACATGAAGGACCTGGGTGAACTCTCATTTTTTG TTGGTATCGATTTCGAAGTCAACCCAGATTCAATCACAATGTCACAATCA AGATACCTTACTAACATGCTCAAGAAGTATAATTTCGAGAAATGCAAACC AAGAAAAACTCCTTGTGAAACCAACCCGAATGCCTACAACGACAACCAAG GTGAATCCAACGAGGAAGATACCAAACTATACCGACAGATGGTAGGCAGC CTTATTTATGCAATGACGTGCACCCGACCAGACCTCAGCTACTGCATAAC CAAGTTATCGCAACATCTTTCTAATCCAACTCCTGGTGATTGGATCATGC TCAAACATGTATTTCGTTATGTCAAAGGAACTGTTGACTATAAACTGAAA TTTCACAAAAGCAAAAAGGGACTGAGATTAAATGCTTTTAGTGATGCTGA TTGGGCTTCATCTACCGACGATCGTCGAAGTATCACAGGTTACTGTACAA ACCTGAATGAACATGGCCCAATCAAAAGCTGGAAATCAAAGAAACAACCA TCGGTGGCGCTATCCACATGTGAAGCAATTACATGGCAATGTCGATCACG TTCCAAGAAACCATTTTCCTGACACAGATTCTGCGCGAGAATCTACGAAC CAAATTCTGCCATTATCAAAAGCGCAAACCAATCAGCTATCGACGAGATC AAGAAATCGACAATTATTCAATGTGACAACCAAGGTGCTATCGCTCTCGT CAAGAATCCTGTCAACAGACCAAAATCAAAGCACATAGATATTCGTTTTC ATTTCATACGTGACTGTTATAATGACAATCGTATTGCAATCGATTATGTG CCTTCCAATTCAAACGTAGCCGACGTTTTCACCAAGCCTCCAAAGAAGCA CCTATTGGAGTCTTTCAACCAACAACTTTTCGGACGTTAACGGACTTAGC GTCAAGTGGGGGTGTTGAGCTATATGACGCTCGCCTCGCTGCTTTGGTTA TATTTAAAgccgccatatttgtttacttcggaacattacgtcattttgtT AGAACTTAGTCTTTTTACACCACGTTTTTCTTATCTAATATGGTAGACGT TTTTTATGCTAGTTGCAGAAGATTTCTTAGAACTGAAGTTCGCTTCTACG TA Run BLAST on NCBI protein sequence of TCONS_00072274-protein >TCONS_00072274-protein ID=TCONS_00072274-protein|Name=TCONS_00072274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MKSIKSQLSAKFNMKDLGELSFFVGIDFEVNPDSITMSQSRYLTNMLKKY NFEKCKPRKTPCETNPNAYNDNQGESNEEDTKLYRQMVGSLIYAMTCTRP DLSYCITKLSQHLSNPTPGDWIMLKHVFRYVKGTVDYKLKFHKSKKGLRL NAFSDADWASSTDDRRSITGYCTNLNEHGPIKSWKSKKQPSVALSTCEAI TWQCRSRSKKPFS Run BLAST on NCBI transcript from alignment at scaffold_72:166388..168239 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072274 ID=TCONS_00072274|Name=TCONS_00072274|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at scaffold_72:166388..168239 (Clytia hemisphaerica) TACGTAGAAGCGAACTTCAGTTCTAAGAAATCTTCTGCAACTAGCATAAA
AAACGTCTACCATATTAGATAAGAAAAACGTGGTGTAAAAAGACTAAGTT
CTAacaaaatgacgtaatgttccgaagtaaacaaatatggcggcTTTAAA
TATAACCAAAGCAGCGAGGCGAGCGTCATATAGCTCAACACCCCCACTTG
ACGCTAAGTCCGTTAACGTCCGAAAAGTTGTTGGTTGAAAGACTCCAATA
GGTGCTTCTTTGGAGGCTTGGTGAAAACGTCGGCTACGTTTGAATTGGAA
GGCACATAATCGATTGCAATACGATTGTCATTATAACAGTCACGTATGAA
ATGAAAACGAATATCTATGTGCTTTGATTTTGGTCTGTTGACAGGATTCT
TGACGAGAGCGATAGCACCTTGGTTGTCACATTGAATAATTGTCGATTTC
TTGATCTCGTCGATAGCTGATTGGTTTGCGCTTTTGATAATGGCAGAATT
TGGTTCGTAGATTCTCGCGCAGAATCTGTGTCAGGAAAATGGTTTCTTGG
AACGTGATCGACATTGCCATGTAATTGCTTCACATGTGGATAGCGCCACC
GATGGTTGTTTCTTTGATTTCCAGCTTTTGATTGGGCCATGTTCATTCAG
GTTTGTACAGTAACCTGTGATACTTCGACGATCGTCGGTAGATGAAGCCC
AATCAGCATCACTAAAAGCATTTAATCTCAGTCCCTTTTTGCTTTTGTGA
AATTTCAGTTTATAGTCAACAGTTCCTTTGACATAACGAAATACATGTTT
GAGCATGATCCAATCACCAGGAGTTGGATTAGAAAGATGTTGCGATAACT
TGGTTATGCAGTAGCTGAGGTCTGGTCGGGTGCACGTCATTGCATAAATA
AGGCTGCCTACCATCTGTCGGTATAGTTTGGTATCTTCCTCGTTGGATTC
ACCTTGGTTGTCGTTGTAGGCATTCGGGTTGGTTTCACAAGGAGTTTTTC
TTGGTTTGCATTTCTCGAAATTATACTTCTTGAGCATGTTAGTAAGGTAT
CTTGATTGTGACATTGTGATTGAATCTGGGTTGACTTCGAAATCGATACC
AACAAAAAATGAGAGTTCACCCAGGTCCTTCATGTTGAACTTTGCGCTGA
GTTGCGATTTGATCGATTTCATTGAGACTGCTGAACTGGAGGCAATGATG
ATATCGTCAACCCATATTAGTAAAATGACTGTTTCGGATTTCtcggtttt
gtagaataaacatGGGTCGGCAGATGACTGTTTGAAATTAAGTTCACTTA
GGAATTCTTGGAGAAGACAGTTCCAGCTCCGTCCGCTTTGTTTCAATCCA
TAGAGCGATTTGTTAAGTTTCCACACTAGCTTCTCACCATTTACTTTGAA
GCCTTCAGGTTGTTCAACATAAACATCACATTCGATTGGTGCATCATCCA
ATCATTCTGAATAGCTAATTGTGTCAAGATTCTAACAGATTCCATCCATA
CTGTTGGTGAGAATGTCTCTGCATAATCAATACCTTCTTTCTGGGTATAG
CCTTTTGCTACGTAGCGAGCTTTGAAGATGGGGGTTTCTGGGTCCCCTTT
GATCGTGTACACCCATTTACCTCCAACTGTTTGTTTGCCATCTGGTAACT
CTGTAAGGGTGAAGGTTTCGTTCGATTTTAACGTTTTGATTTTTGCTTCC
ATGGCCGACTGCCATTGCTTTGACTGATTTCCGTTGATAGCCTCATGGAG
GGTGGGTGGTCCATTGACATGGTTGATACAATCATAGAGATCTAAATGTT
CAGAGTTCACAGGGTCTCCGTAACGCTCAGGTTGTTTTCTCTCACGGGTA
NN Coding sequence (CDS) from alignment at scaffold_72:166388..168239 >TCONS_00072274 ID=TCONS_00072274|Name=TCONS_00072274|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_72:166388..168239 (Clytia hemisphaerica) TCAGGAAAATGGTTTCTTGGAACGTGATCGACATTGCCATGTAATTGCTT CACATGTGGATAGCGCCACCGATGGTTGTTTCTTTGATTTCCAGCTTTTG ATTGGGCCATGTTCATTCAGGTTTGTACAGTAACCTGTGATACTTCGACG ATCGTCGGTAGATGAAGCCCAATCAGCATCACTAAAAGCATTTAATCTCA GTCCCTTTTTGCTTTTGTGAAATTTCAGTTTATAGTCAACAGTTCCTTTG ACATAACGAAATACATGTTTGAGCATGATCCAATCACCAGGAGTTGGATT AGAAAGATGTTGCGATAACTTGGTTATGCAGTAGCTGAGGTCTGGTCGGG TGCACGTCATTGCATAAATAAGGCTGCCTACCATCTGTCGGTATAGTTTG GTATCTTCCTCGTTGGATTCACCTTGGTTGTCGTTGTAGGCATTCGGGTT GGTTTCACAAGGAGTTTTTCTTGGTTTGCATTTCTCGAAATTATACTTCT TGAGCATGTTAGTAAGGTATCTTGATTGTGACATTGTGATTGAATCTGGG TTGACTTCGAAATCGATACCAACAAAAAATGAGAGTTCACCCAGGTCCTT CATGTTGAACTTTGCGCTGAGTTGCGATTTGATCGATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072274-exon-scaffold_72-1491911889:166388..168239 | TCONS_00072274-exon-scaffold_72-1491911889:166388..168239 | Clytia hemisphaerica | exon |
TCONS_00072274-exon-scaffold_72-1510915933:166388..168239 | TCONS_00072274-exon-scaffold_72-1510915933:166388..168239 | Clytia hemisphaerica | exon |
TCONS_00072274-exon-scaffold_72-1575043694:166388..168239 | TCONS_00072274-exon-scaffold_72-1575043694:166388..168239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_72 | supercontig | scaffold_72:166388..168239 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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