TCONS_00072271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072271
Unique NameTCONS_00072271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072271 ID=TCONS_00072271|Name=TCONS_00072271|organism=Clytia hemisphaerica|type=transcript|length=310bp
GGCAAGGACGCATATTTCACAATCGAAAGTCTCATGATTGCAGATATGCA
TACCCGACACAACTTTCTCTAACTTTTCGATGTCGTGGGTATTACAATGT
CCAAGAATTTTGTGCcacatttcaaggctttctcGTCGGTTTCGGGATGA
GTAAGATTTGTAGAGGTAATAGAGACGATTCCTCTCTTCGATTTGGAATA
CGGTACCATCTGGAGTAATGAGTTCTGCATACTGTTCATAGAATCTCACT
GATGCTCCGAATTTGGTTGCTGCTTtaacagaaaatatattttgggGGAA
TGAAGGTGTG
Run BLAST on NCBI

protein sequence of TCONS_00072271-protein

>TCONS_00072271-protein ID=TCONS_00072271-protein|Name=TCONS_00072271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
TPSFPQNIFSVKAATKFGASVRFYEQYAELITPDGTVFQIEERNRLYYLY
KSYSSRNRRESLEMWHKILGHCNTHDIEKLEKVVSGMHICNHETFDCEIC
VLA
Run BLAST on NCBI

transcript from alignment at scaffold_72:104605..104914

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072271 ID=TCONS_00072271|Name=TCONS_00072271|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_72:104605..104914 (Clytia hemisphaerica)
CACACCTTCATTCCcccaaaatatattttctgttaAAGCAGCAACCAAAT
TCGGAGCATCAGTGAGATTCTATGAACAGTATGCAGAACTCATTACTCCA
GATGGTACCGTATTCCAAATCGAAGAGAGGAATCGTCTCTATTACCTCTA
CAAATCTTACTCATCCCGAAACCGACgagaaagccttgaaatgtgGCACA
AAATTCTTGGACATTGTAATACCCACGACATCGAAAAGTTAGAGAAAGTT
GTGTCGGGTATGCATATCTGCAATCATGAGACTTTCGATTGTGAAATATG
CGTCCTTGCC

Coding sequence (CDS) from alignment at scaffold_72:104605..104914

>TCONS_00072271 ID=TCONS_00072271|Name=TCONS_00072271|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_72:104605..104914 (Clytia hemisphaerica)
ACACCTTCATTCCcccaaaatatattttctgttaAAGCAGCAACCAAATT
CGGAGCATCAGTGAGATTCTATGAACAGTATGCAGAACTCATTACTCCAG
ATGGTACCGTATTCCAAATCGAAGAGAGGAATCGTCTCTATTACCTCTAC
AAATCTTACTCATCCCGAAACCGACgagaaagccttgaaatgtgGCACAA
AATTCTTGGACATTGTAATACCCACGACATCGAAAAGTTAGAGAAAGTTG
TGTCGGGTATGCATATCTGCAATCATGAGACTTTCGATTGTGAAATATGC
GTCCTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044878XLOC_044878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072271-exon-scaffold_72-1491911889:104605..104914TCONS_00072271-exon-scaffold_72-1491911889:104605..104914Clytia hemisphaericaexon
TCONS_00072271-exon-scaffold_72-1510915933:104605..104914TCONS_00072271-exon-scaffold_72-1510915933:104605..104914Clytia hemisphaericaexon
TCONS_00072271-exon-scaffold_72-1575043694:104605..104914TCONS_00072271-exon-scaffold_72-1575043694:104605..104914Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072271-proteinTCONS_00072271-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:104605..104914 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.34239	1.59217	4.88002	4.19781	4.75605	5.57306	2.04717	4.81641	4.92502	5.02015	1.78818	3.01296	0.558512	1.60411	2.40634	3.32234	2.07353	1.30802	4.36361	2.1812	1.5145	0.398423	1.11755	2.12163	1.34576	1.85918	0.773403	1.78375	1.32821
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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