TCONS_00072270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072270
Unique NameTCONS_00072270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072270 ID=TCONS_00072270|Name=TCONS_00072270|organism=Clytia hemisphaerica|type=transcript|length=402bp
CTGTCAGTCAACCCCAGTCTGCTTACGCCTGTTTCGTTGGAGGTTACCAG
CACAAACTCACGTACTTCCTGAGGACAGTTCCTGACATCGAGGAATATCT
GCAACCGGTTGATGAGGTGATACGACACCATTTGATTCCTGCTCTCACTG
GTGGTCGACTTGTCAGTGACGATGAACGCCAGCTTCTCTCACTTCCACCA
CGACTCGGTGGCTTGGGATTGAAGATGTTTGTAGAAACAGCGTCAGAAGA
GTTCAATAATTCCCAACGAATGACGAATGACAACCAAAATCAAATTCTTG
GTaaagagaaaattgaaaatccaGCGACCAAATATCAAATCATAAAAGAA
AGGTCAGAtcgtcaaaaagaaaaactcgACCATCTCATTCAATCAATGGC
AC
Run BLAST on NCBI

protein sequence of TCONS_00072270-protein

>TCONS_00072270-protein ID=TCONS_00072270-protein|Name=TCONS_00072270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
VSQPQSAYACFVGGYQHKLTYFLRTVPDIEEYLQPVDEVIRHHLIPALTG
GRLVSDDERQLLSLPPRLGGLGLKMFVETASEEFNNSQRMTNDNQNQILG
KEKIENPATKYQIIKERSDRQKEKLDHLIQSMA
Run BLAST on NCBI

transcript from alignment at scaffold_72:62243..62644

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072270 ID=TCONS_00072270|Name=TCONS_00072270|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at scaffold_72:62243..62644 (Clytia hemisphaerica)
GTGCCATTGATTGAATGAGATGGTcgagtttttctttttgacgaTCTGAC
CTTTCTTTTATGATTTGATATTTGGTCGCtggattttcaattttctcttt
ACCAAGAATTTGATTTTGGTTGTCATTCGTCATTCGTTGGGAATTATTGA
ACTCTTCTGACGCTGTTTCTACAAACATCTTCAATCCCAAGCCACCGAGT
CGTGGTGGAAGTGAGAGAAGCTGGCGTTCATCGTCACTGACAAGTCGACC
ACCAGTGAGAGCAGGAATCAAATGGTGTCGTATCACCTCATCAACCGGTT
GCAGATATTCCTCGATGTCAGGAACTGTCCTCAGGAAGTACGTGAGTTTG
TGCTGGTAACCTCCAACGAAACAGGCGTAAGCAGACTGGGGTTGACTGAC
AG

Coding sequence (CDS) from alignment at scaffold_72:62243..62644

>TCONS_00072270 ID=TCONS_00072270|Name=TCONS_00072270|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_72:62243..62644 (Clytia hemisphaerica)
TGCCATTGATTGAATGAGATGGTcgagtttttctttttgacgaTCTGACC
TTTCTTTTATGATTTGATATTTGGTCGCtggattttcaattttctctttA
CCAAGAATTTGATTTTGGTTGTCATTCGTCATTCGTTGGGAATTATTGAA
CTCTTCTGACGCTGTTTCTACAAACATCTTCAATCCCAAGCCACCGAGTC
GTGGTGGAAGTGAGAGAAGCTGGCGTTCATCGTCACTGACAAGTCGACCA
CCAGTGAGAGCAGGAATCAAATGGTGTCGTATCACCTCATCAACCGGTTG
CAGATATTCCTCGATGTCAGGAACTGTCCTCAGGAAGTACGTGAGTTTGT
GCTGGTAACCTCCAACGAAACAGGCGTAAGCAGACTGGGGTTGACTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044877XLOC_044877Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072270-proteinTCONS_00072270-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072270-exon-scaffold_72-1491911889:62243..62644TCONS_00072270-exon-scaffold_72-1491911889:62243..62644Clytia hemisphaericaexon
TCONS_00072270-exon-scaffold_72-1510915933:62243..62644TCONS_00072270-exon-scaffold_72-1510915933:62243..62644Clytia hemisphaericaexon
TCONS_00072270-exon-scaffold_72-1575043694:62243..62644TCONS_00072270-exon-scaffold_72-1575043694:62243..62644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:62243..62644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.309672	0.716285	0.860268	0.887645	1.4989	2.88761	1.63687	3.44789	1.88288	1.64473	1.68116	2.29535	1.01482	1.43091	0.371188	1.85004	0.375815	1.41617	0.475943	0.367441	0.383728	0	1.76618	0.811476	0	0	0.351342	0.558109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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