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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072268 ID=TCONS_00072268|Name=TCONS_00072268|organism=Clytia hemisphaerica|type=transcript|length=2180bp
ACTGAAAAGCCATAGTTTGCTACTTTCAAGTTTGGAAATGGAGGTCCAGT
TCAATCGTTAAAGAAAGTTCCACTGCCAGTAAGAATTGGGCATCAAGAGA
TTGACCTAGAAGCTGATGTTGCCGACGCTGATATTCCGCTACTTCTATCC
AAAAGCGCAATGAAAAAGTCATCCACAGTAATCGATTTCAACAAAGACAC
GACAGTCATGTTTGGGGAAGAGCAAAAGCTAATCAAAACAACATCTGGTC
ATTACGCAATACCTCtcacaaagaaaagaaaaaccatTGAAGACAGCTCT
GATGAAGAAATTGAAACTGTCTTTGCCTGTGTCAATACAACTGCTCCttc
tgaaaatgaaattgtaaaaCTTCACCGTCAATTTGGTCATTGTCATGAGA
GTCGTCTGATGAGATTGATTGattcttcaaaaatttggaaCGATTCTAAG
CAGGTTTCAAGAATGGTAAAGGAAATCTCAGAGAATTGTGACGTGTGCAA
AAGATACAAGAAGGGGAAGTTGAAACCAATTGTTAGCATTCCCCTGGCAT
CAGAATTCAACCAAACAGTTGTGATGGATTTAATCACGTATGAACAAGGT
GTTTGGGTTCTTCACTCGATTGACCTGTTTTCAAGGTATCCTACTGCCTG
CGTAAGGAGATCTAAGAAGCAAGATGCTATGGTGGAcgcaattttgaaaa
tttcgatcaGTTACTTTGGTTTTGGACAGCCGCGAAAGTTCTTAGCAGAT
CAGAGCAGATAATGGAGGAGAATTCTCCAATGAGGAATACAAAGAAATGT
GCGAAATGTTCAATATCGAAGAAGCAAAGACAGCTGCCGAAAGTCCATGG
GCAAATGGTGTTTGTGAGCGACACAATGCTGTGATAAAAGAGGCTGCTAG
GAAGACGATGGATGAGTCGAAATGAGTTTTGAAACAGCAGTCGTATGGGC
AACAATTGCAAAAAATCTGTTAAGTGGTCACCAAGGATTTAGCCCCAACA
TGTTGGTTTTTGGAAGAAATACAAACTACCCAAACGTCCTTACCAACGCT
TTGCCAGCTTTGGAAACTAATATTCTCAGTAAAACAGTCGAGAATAACCT
GAAAGCGTTAAATAATGCTCGCACAGCTTTCATTCAAGCGGAATCATTGG
AGAAGATTAAACGCGCACTGAAACACAAGGTCAGATCTTGCAATGACACA
GTATTCCAATTACTGAGGAAGTATTAATTGCATCATCTGTTAACAAAGAA
AACGTCCAAGCTGCCAAAGAGAAGGAATTAAAGAATTGGTCGGATAATAA
TGTATACTCCGAAGTTGAAGACAAAAACCAACACGCCATCAGCTGTCGGT
GGGCGATTGAAACAAAGAAGGTAGATGAAGATGGTCTTGATGTCACTAAA
GCAAGACTCTGTGCAAGAGGATTTGAGGACGAAGAGGCTTCTAACCGAAG
AACAGATTCACCTACTTGCTCAAAGGAGGCTGAGGATAACTTTTGCATTA
ATTCAGATTAATTGCATTCTCTAATAGCATACCGTAGCgaatctaaaaat
gaaattgatttttctgtttgaccaaATTCAATCTcgtcaacctttgcgtt
aatcatGCTGGCacacgcaaattacactcaattacaaagaaaaaataata
aatttcacgacttttgaattaaaacaaaaaaggattgtgggattgaattt
cggtcaaatgagacAAGTAATAATCGTGACGTTTGCACGACGAAACTTTC
GTCGATGGACATAAAACGTGCATTTCTACAGGGCAACACACttaacaaag
aaattttcatcaaacCGCCCAAAGAGGCAAAAACGAGCAAGTTGTGGCGT
GTGAAACGTTTAAATGTGTTTACAGTTTAAATGAAGCATCTCGTTTTTGT
ATAACCGTGTCCATGAGGAATTTCTGACAATTGGTCTTACAAGGTCAAGT
TTTGATGACGCgatgttttattttcaaccaTCCAATACAGAATTGTGTGA
AGGAATTATCGTCATACATGTTGACGATTTTCTGTATGGGGGATCAAAGC
GATTTGAGAAGAAAATAGAGGAGATTCGGCAGAAGTTTATTGTTGGCTCT
GAATTTGATGCACCTTTCAAGTAAGTTGGATTAAATGTTGACAGAAGAAA
TGATGCAATCATCATCGACCAAAGTAGTTA Run BLAST on NCBI protein sequence of TCONS_00072268-protein >TCONS_00072268-protein ID=TCONS_00072268-protein|Name=TCONS_00072268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MKKSSTVIDFNKDTTVMFGEEQKLIKTTSGHYAIPLTKKRKTIEDSSDEE
IETVFACVNTTAPSENEIVKLHRQFGHCHESRLMRLIDSSKIWNDSKQVS
RMVKEISENCDVCKRYKKGKLKPIVSIPLASEFNQTVVMDLITYEQGVWV
LHSIDLFSRYPTACVRRSKKQDAMVDAILKISISYFGFGQPRKFLADQSR Run BLAST on NCBI transcript from alignment at scaffold_72:16905..19084 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072268 ID=TCONS_00072268|Name=TCONS_00072268|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at scaffold_72:16905..19084 (Clytia hemisphaerica)
TAACTACTTTGGTCGATGATGATTGCATCATTTCTTCTGTCAACATTTAA
TCCAACTTACTTGAAAGGTGCATCAAATTCAGAGCCAACAATAAACTTCT
GCCGAATCTCCTCTATTTTCTTCTCAAATCGCTTTGATCCCCCATACAGA
AAATCGTCAACATGTATGACGATAATTCCTTCACACAATTCTGTATTGGA
tggttgaaaataaaacatcGCGTCATCAAAACTTGACCTTGTAAGACCAA
TTGTCAGAAATTCCTCATGGACACGGTTATACAAAAACGAGATGCTTCAT
TTAAACTGTAAACACATTTAAACGTTTCACACGCCACAACTTGCTCGTTT
TTGCCTCTTTGGGCGgtttgatgaaaatttctttgttaaGTGTGTTGCCC
TGTAGAAATGCACGTTTTATGTCCATCGACGAAAGTTTCGTCGTGCAAAC
GTCACGATTATTACTTgtctcatttgaccgaaattcaatcccacaatcct
tttttgttttaattcaaaagtcgtgaaatttattattttttctttgtaat
tgagtgtaatttgcgtgtGCCAGCatgattaacgcaaaggttgacgAGAT
TGAATttggtcaaacagaaaaatcaatttcatttttagattcGCTACGGT
ATGCTATTAGAGAATGCAATTAATCTGAATTAATGCAAAAGTTATCCTCA
GCCTCCTTTGAGCAAGTAGGTGAATCTGTTCTTCGGTTAGAAGCCTCTTC
GTCCTCAAATCCTCTTGCACAGAGTCTTGCTTTAGTGACATCAAGACCAT
CTTCATCTACCTTCTTTGTTTCAATCGCCCACCGACAGCTGATGGCGTGT
TGGTTTTTGTCTTCAACTTCGGAGTATACATTATTATCCGACCAATTCTT
TAATTCCTTCTCTTTGGCAGCTTGGACGTTTTCTTTGTTAACAGATGATG
CAATTAATACTTCCTCAGTAATTGGAATACTGTGTCATTGCAAGATCTGA
CCTTGTGTTTCAGTGCGCGTTTAATCTTCTCCAATGATTCCGCTTGAATG
AAAGCTGTGCGAGCATTATTTAACGCTTTCAGGTTATTCTCGACTGTTTT
ACTGAGAATATTAGTTTCCAAAGCTGGCAAAGCGTTGGTAAGGACGTTTG
GGTAGTTTGTATTTCTTCCAAAAACCAACATGTTGGGGCTAAATCCTTGG
TGACCACTTAACAGATTTTTTGCAATTGTTGCCCATACGACTGCTGTTTC
AAAACTCATTTCGACTCATCCATCGTCTTCCTAGCAGCCTCTTTTATCAC
AGCATTGTGTCGCTCACAAACACCATTTGCCCATGGACTTTCGGCAGCTG
TCTTTGCTTCTTCGATATTGAACATTTCGCACATTTCTTTGTATTCCTCA
TTGGAGAATTCTCCTCCATTATCTGCTCTGATCTGCTAAGAACTTTCGCG
GCTGTCCAAAACCAAAGTAACtgatcgaaattttcaaaattgcgTCCACC
ATAGCATCTTGCTTCTTAGATCTCCTTACGCAGGCAGTAGGATACCTTGA
AAACAGGTCAATCGAGTGAAGAACCCAAACACCTTGTTCATACGTGATTA
AATCCATCACAACTGTTTGGTTGAATTCTGATGCCAGGGGAATGCTAACA
ATTGGTTTCAACTTCCCCTTCTTGTATCTTTTGCACACGTCACAATTCTC
TGAGATTTCCTTTACCATTCTTGAAACCTGCTTAGAATCGttccaaattt
ttgaagaatCAATCAATCTCATCAGACGACTCTCATGACAATGACCAAAT
TGACGGTGAAGttttacaatttcattttcagaaGGAGCAGTTGTATTGAC
ACAGGCAAAGACAGTTTCAATTTCTTCATCAGAGCTGTCTTCAatggttt
ttcttttctttgtgaGAGGTATTGCGTAATGACCAGATGTTGTTTTGATT
AGCTTTTGCTCTTCCCCAAACATGACTGTCGTGTCTTTGTTGAAATCGAT
TACTGTGGATGACTTTTTCATTGCGCTTTTGGATAGAAGTAGCGGAATAT
CAGCGTCGGCAACATCAGCTTCTAGGTCAATCTCTTGATGCCCAATTCTT
ACTGGCAGTGGAACTTTCTTTAACGATTGAACTGGACCTCCATTTCCAAA
CTTGAAAGTAGCAAACTATGGCTTTTCAGT Coding sequence (CDS) from alignment at scaffold_72:16905..19084 >TCONS_00072268 ID=TCONS_00072268|Name=TCONS_00072268|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_72:16905..19084 (Clytia hemisphaerica)
TTATCTGCTCTGATCTGCTAAGAACTTTCGCGGCTGTCCAAAACCAAAGT
AACtgatcgaaattttcaaaattgcgTCCACCATAGCATCTTGCTTCTTA
GATCTCCTTACGCAGGCAGTAGGATACCTTGAAAACAGGTCAATCGAGTG
AAGAACCCAAACACCTTGTTCATACGTGATTAAATCCATCACAACTGTTT
GGTTGAATTCTGATGCCAGGGGAATGCTAACAATTGGTTTCAACTTCCCC
TTCTTGTATCTTTTGCACACGTCACAATTCTCTGAGATTTCCTTTACCAT
TCTTGAAACCTGCTTAGAATCGttccaaatttttgaagaatCAATCAATC
TCATCAGACGACTCTCATGACAATGACCAAATTGACGGTGAAGttttaca
atttcattttcagaaGGAGCAGTTGTATTGACACAGGCAAAGACAGTTTC
AATTTCTTCATCAGAGCTGTCTTCAatggtttttcttttctttgtgaGAG
GTATTGCGTAATGACCAGATGTTGTTTTGATTAGCTTTTGCTCTTCCCCA
AACATGACTGTCGTGTCTTTGTTGAAATCGATTACTGTGGATGACTTTTT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072268-exon-scaffold_72-1491911889:16905..19084 | TCONS_00072268-exon-scaffold_72-1491911889:16905..19084 | Clytia hemisphaerica | exon |
| TCONS_00072268-exon-scaffold_72-1510915933:16905..19084 | TCONS_00072268-exon-scaffold_72-1510915933:16905..19084 | Clytia hemisphaerica | exon |
| TCONS_00072268-exon-scaffold_72-1575043694:16905..19084 | TCONS_00072268-exon-scaffold_72-1575043694:16905..19084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_72 | supercontig | scaffold_72:16905..19084 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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