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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072262 ID=TCONS_00072262|Name=TCONS_00072262|organism=Clytia hemisphaerica|type=transcript|length=1324bpRun BLAST on NCBI protein sequence of TCONS_00072262-protein >TCONS_00072262-protein ID=TCONS_00072262-protein|Name=TCONS_00072262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp FFFYSQKYFCHNLVYIPVFRNFIWICVWNCIFILNKQIMDEWFDDWDVKVRun BLAST on NCBI transcript from alignment at scaffold_72:32975..127822+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072262 ID=TCONS_00072262|Name=TCONS_00072262|organism=Clytia hemisphaerica|type=transcript|length=94848bp|location=Sequence derived from alignment at scaffold_72:32975..127822+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_72:32975..127822+ >TCONS_00072262 ID=TCONS_00072262|Name=TCONS_00072262|organism=Clytia hemisphaerica|type=CDS|length=13884bp|location=Sequence derived from alignment at scaffold_72:32975..127822+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072262 vs. Swiss-Prot (Human)
Match: MACD2 (O-acetyl-ADP-ribose deacetylase MACROD2 OS=Homo sapiens GN=MACROD2 PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 3.149e-43 Identity = 96/234 (41.03%), Postives = 132/234 (56.41%), Query Frame = 1
Query: 340 WDNELARKFLKLPTKEKRKMLNGKVVPLGFVPIYISSPYSLK-----TEKSTKFSAD--RIINNKISLWNGDITYLEVDAIVNPTGEGLVCYGGVDGAIRRVAGPTLFKELSQFSGCAPGEAVFTGGHMLPARYIIHTVGP------RKLQKNVLQRAYKNILELVRRKNIKTVALPCISSGDFGKPNKEDAEVALQSIRDWLEDYACEVDRVIFCLKDPQNFSIYNTLMPAFF 1002
W E R LK+ +E+RK +PL + +S +K E++T+ ++ + + K+SL+ GDIT LEVDAIVN L+ GGVDG I R AGP L E +GC G A T G+ LPA+Y+IHTVGP K L YK+ L+LV+ NI++VA PCIS+G +G PN+ A +AL +I++WL EVDR+IFC+ +F IY M FF
Sbjct: 11 WREEKER-LLKMTLEERRKEYLRDYIPLNSI---LSWKEEMKGKGQNDEENTQETSQVKKSLTEKVSLYRGDITLLEVDAIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNLNGCDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNIRSVAFPCISTGIYGFPNEPAAVIALNTIKEWLAKNHHEVDRIIFCVFLEVDFKIYKKKMNEFF 240 The following BLAST results are available for this feature:
BLAST of TCONS_00072262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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