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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072260 ID=TCONS_00072260|Name=TCONS_00072260|organism=Clytia hemisphaerica|type=transcript|length=976bpRun BLAST on NCBI transcript from alignment at scaffold_72:8012..127822+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072260 ID=TCONS_00072260|Name=TCONS_00072260|organism=Clytia hemisphaerica|type=transcript|length=119811bp|location=Sequence derived from alignment at scaffold_72:8012..127822+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072260 vs. Swiss-Prot (Human)
Match: MACD2 (O-acetyl-ADP-ribose deacetylase MACROD2 OS=Homo sapiens GN=MACROD2 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.173e-16 Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 3
Query: 201 WDNELARKFLKLPTKEKRKMLNGKVVPLGFVPIYISSPYSLK-----TEKSTKFSAD--RIINNKISLWNGDITYLEVDAIVNPTGEGLVCYGGVDGAIRRVAGPTLFKELSQFSGCAPGEAVFTGGHMLPAR 578
W E R LK+ +E+RK +PL + +S +K E++T+ ++ + + K+SL+ GDIT LEVDAIVN L+ GGVDG I R AGP L E +GC G A T G+ LPA+
Sbjct: 11 WREEKER-LLKMTLEERRKEYLRDYIPLNSI---LSWKEEMKGKGQNDEENTQETSQVKKSLTEKVSLYRGDITLLEVDAIVNAANASLLGGGGVDGCIHRAAGPCLLAECRNLNGCDTGHAKITCGYDLPAK 139 The following BLAST results are available for this feature:
BLAST of TCONS_00072260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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