TCONS_00072259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072259
Unique NameTCONS_00072259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072259 ID=TCONS_00072259|Name=TCONS_00072259|organism=Clytia hemisphaerica|type=transcript|length=169bp
AGGCCATGCTTGCATGTTCCacttttgtaaaatttgcagaTTTGGGATTT
CTTTTCATTATCTTTGATTTCGCCtcttcttgttttgttttgatcgGGAG
AATGTTATAGCGTGCCAATTGCAATTTGAGCAAAACTTCTTAATATAGGT
AATATCAATTTTCCTGCtt
Run BLAST on NCBI

transcript from alignment at scaffold_71:1356735..1356903

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072259 ID=TCONS_00072259|Name=TCONS_00072259|organism=Clytia hemisphaerica|type=transcript|length=169bp|location=Sequence derived from alignment at scaffold_71:1356735..1356903 (Clytia hemisphaerica)
aaGCAGGAAAATTGATATTACCTATATTAAGAAGTTTTGCTCAAATTGCA
ATTGGCACGCTATAACATTCTCCcgatcaaaacaaaacaagaagaGGCGA
AATCAAAGATAATGAAAAGAAATCCCAAAtctgcaaattttacaaaagtG
GAACATGCAAGCATGGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044871XLOC_044871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072259-exon-scaffold_71-1491911889:1356735..1356903TCONS_00072259-exon-scaffold_71-1491911889:1356735..1356903Clytia hemisphaericaexon
TCONS_00072259-exon-scaffold_71-1510915933:1356735..1356903TCONS_00072259-exon-scaffold_71-1510915933:1356735..1356903Clytia hemisphaericaexon
TCONS_00072259-exon-scaffold_71-1575043694:1356735..1356903TCONS_00072259-exon-scaffold_71-1575043694:1356735..1356903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1356735..1356903 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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