|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072258 ID=TCONS_00072258|Name=TCONS_00072258|organism=Clytia hemisphaerica|type=transcript|length=1424bp
CTATGGGTAGGTGGTCGCTAGTATTGAGGTAGTGTTGTTGTAGTATGTTG
ATGTTTGTTATTTTATCTAGGATGTTATTCGATACCAGTATATGATCGAT
ATAAGACTGGTTTGGTAGCGTAGCATGGTGATAAGTGTATGATGGGCCGG
TACCATTTGTAATATCTATAGGTGTTAAGTTAAATGTTCTGATGAATTCG
TTTAGGTGATCGGTTAGTGAATTTGGTTTTCCGATTCTTCCTGATGGGTG
GGTTGTTGGGCATGACTGGAAATCGCCTAGTATGATGCATTCTGAGCTGT
TTTCAAATTGTTTGATAATTCCACCTATATTTGATAGTTGTGATGAATAT
ATATCTCTAACGTTTGGGTTGTTATTGACAGATTGTAGATATACTCCAAT
TATAAGCAagtcataatttttcaaaggtATTTTAACTGTTGTGTTGAAGT
CTGTTTTCGATAAGAGTTCTGGAGAGGGTAATGTACGTTTTATCATCATA
GCTGTTCCACCATAAGGGCGACCTGTCAAGCCTTGTTTGGCTGGTTGGAA
GAAAATATAAAAGTCTTTTTGGAAGTTGtgtagtaatattttttcaGTTT
CCGTTATCCATGTTTCGGATAGAAAAATAATGTCGTATGTCGAAGATAGG
AAGTCAATGTATTTGAAATTTGCCTTGATGCCATGGCAGTTCAGGGATAT
GAAATTAGTATTCTCCATTTTGAGTGTTGAAAGAGTCTGTTGGATCTAGG
CATGCAAATCTGTTGGGATGTGTGAAGTTAGGTTGTTGGTTGGCGAACTG
GAAGTCGGTAGGGTATGGGATGAAAAACTGGTTGTCTTGATCTGTGTTGT
TGGGGTATCGGATTTGTCGGTTCTCTGTGTGAACAGTTGGGTGATTGTTG
CGTTGTTGTCGCTGTGTTTGTCGGTTAGTATCAGTACGGCGTTGTCCGTT
GTAGGCTTGGGTAAGAGGGTGAATTTCGGGATGTTGTTGACGTTTCTGGT
TTCTAGTTGGGTGTTGATGCTGGTGGGTGATGTCCCTTTGAGGTTGTTGG
TTGTTTGATTGATGGTGCGTCCTCTGTTGCTTCCTGTTGAATCGTGGGGG
GTTGGCGGAATGATATTGGTCTTGTTCAGTGTTGTCTTGTCTTATGTGCG
GCTGTTGGTTTCTGTAGTTgaccttttttctaaaattttccttaaaaggt
TTGACAACCAGACCATGAAACCAAATGTCTGGGTTGAAGGCTTTCTCTCT
TTCAAACGGATCAATGTCAATTTTGAAAGCCTGGTTTgtatggttctggt
gaattaaTGTCACTTTGACTACTGTCAGTCTGATTTCATTAGCTACTATA
TCCCAGACATTGTCTTCGGTTAGAGTCGGTTTAAAGCCTCCAACAAACAG
AGAGTATGGTTTCGGTTTACCGGC Run BLAST on NCBI protein sequence of TCONS_00072258-protein >TCONS_00072258-protein ID=TCONS_00072258-protein|Name=TCONS_00072258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
AGKPKPYSLFVGGFKPTLTEDNVWDIVANEIRLTVVKVTLIHQNHTNQAF
KIDIDPFEREKAFNPDIWFHGLVVKPFKENFRKKVNYRNQQPHIRQDNTE
QDQYHSANPPRFNRKQQRTHHQSNNQQPQRDITHQHQHPTRNQKRQQHPE
IHPLTQAYNGQRRTDTNRQTQRQQRNNHPTVHTENRQIRYPNNTDQDNQF
FIPYPTDFQFANQQPNFTHPNRFACLDPTDSFNTQNGEY Run BLAST on NCBI transcript from alignment at scaffold_71:1332634..1334057 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072258 ID=TCONS_00072258|Name=TCONS_00072258|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at scaffold_71:1332634..1334057 (Clytia hemisphaerica)
GCCGGTAAACCGAAACCATACTCTCTGTTTGTTGGAGGCTTTAAACCGAC
TCTAACCGAAGACAATGTCTGGGATATAGTAGCTAATGAAATCAGACTGA
CAGTAGTCAAAGTGACAttaattcaccagaaccatacAAACCAGGCTTTC
AAAATTGACATTGATCCGTTTGAAAGAGAGAAAGCCTTCAACCCAGACAT
TTGGTTTCATGGTCTGGTTGTCAAaccttttaaggaaaattttagaaaaa
aggtcAACTACAGAAACCAACAGCCGCACATAAGACAAGACAACACTGAA
CAAGACCAATATCATTCCGCCAACCCCCCACGATTCAACAGGAAGCAACA
GAGGACGCACCATCAATCAAACAACCAACAACCTCAAAGGGACATCACCC
ACCAGCATCAACACCCAACTAGAAACCAGAAACGTCAACAACATCCCGAA
ATTCACCCTCTTACCCAAGCCTACAACGGACAACGCCGTACTGATACTAA
CCGACAAACACAGCGACAACAACGCAACAATCACCCAACTGTTCACACAG
AGAACCGACAAATCCGATACCCCAACAACACAGATCAAGACAACCAGTTT
TTCATCCCATACCCTACCGACTTCCAGTTCGCCAACCAACAACCTAACTT
CACACATCCCAACAGATTTGCATGCCTAGATCCAACAGACTCTTTCAACA
CTCAAAATGGAGAATACTAATTTCATATCCCTGAACTGCCATGGCATCAA
GGCAAATTTCAAATACATTGACTTCCTATCTTCGACATACGACATTATTT
TTCTATCCGAAACATGGATAACGGAAACtgaaaaaatattactacaCAAC
TTCCAAAAAGACTTTTATATTTTCTTCCAACCAGCCAAACAAGGCTTGAC
AGGTCGCCCTTATGGTGGAACAGCTATGATGATAAAACGTACATTACCCT
CTCCAGAACTCTTATCGAAAACAGACTTCAACACAACAGTTAAAATacct
ttgaaaaattatgactTGCTTATAATTGGAGTATATCTACAATCTGTCAA
TAACAACCCAAACGTTAGAGATATATATTCATCACAACTATCAAATATAG
GTGGAATTATCAAACAATTTGAAAACAGCTCAGAATGCATCATACTAGGC
GATTTCCAGTCATGCCCAACAACCCACCCATCAGGAAGAATCGGAAAACC
AAATTCACTAACCGATCACCTAAACGAATTCATCAGAACATTTAACTTAA
CACCTATAGATATTACAAATGGTACCGGCCCATCATACACTTATCACCAT
GCTACGCTACCAAACCAGTCTTATATCGATCATATACTGGTATCGAATAA
CATCCTAGATAAAATAACAAACATCAACATACTACAACAACACTACCTCA
ATACTAGCGACCACCTACCCATAG Coding sequence (CDS) from alignment at scaffold_71:1332634..1334057 >TCONS_00072258 ID=TCONS_00072258|Name=TCONS_00072258|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_71:1332634..1334057 (Clytia hemisphaerica)
GCCGGTAAACCGAAACCATACTCTCTGTTTGTTGGAGGCTTTAAACCGAC
TCTAACCGAAGACAATGTCTGGGATATAGTAGCTAATGAAATCAGACTGA
CAGTAGTCAAAGTGACAttaattcaccagaaccatacAAACCAGGCTTTC
AAAATTGACATTGATCCGTTTGAAAGAGAGAAAGCCTTCAACCCAGACAT
TTGGTTTCATGGTCTGGTTGTCAAaccttttaaggaaaattttagaaaaa
aggtcAACTACAGAAACCAACAGCCGCACATAAGACAAGACAACACTGAA
CAAGACCAATATCATTCCGCCAACCCCCCACGATTCAACAGGAAGCAACA
GAGGACGCACCATCAATCAAACAACCAACAACCTCAAAGGGACATCACCC
ACCAGCATCAACACCCAACTAGAAACCAGAAACGTCAACAACATCCCGAA
ATTCACCCTCTTACCCAAGCCTACAACGGACAACGCCGTACTGATACTAA
CCGACAAACACAGCGACAACAACGCAACAATCACCCAACTGTTCACACAG
AGAACCGACAAATCCGATACCCCAACAACACAGATCAAGACAACCAGTTT
TTCATCCCATACCCTACCGACTTCCAGTTCGCCAACCAACAACCTAACTT
CACACATCCCAACAGATTTGCATGCCTAGATCCAACAGACTCTTTCAACA
CTCAAAATGGAGAATACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072258-exon-scaffold_71-1491911889:1332634..1334057 | TCONS_00072258-exon-scaffold_71-1491911889:1332634..1334057 | Clytia hemisphaerica | exon |
| TCONS_00072258-exon-scaffold_71-1510915933:1332634..1334057 | TCONS_00072258-exon-scaffold_71-1510915933:1332634..1334057 | Clytia hemisphaerica | exon |
| TCONS_00072258-exon-scaffold_71-1575043694:1332634..1334057 | TCONS_00072258-exon-scaffold_71-1575043694:1332634..1334057 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1332634..1334057 . |
Blast
The following BLAST results are available for this feature:
|
