TCONS_00072256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072256
Unique NameTCONS_00072256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072256 ID=TCONS_00072256|Name=TCONS_00072256|organism=Clytia hemisphaerica|type=transcript|length=284bp
GTAATGACTTTTTTCCGCTACGTGGTTCCGATTATGTTCCGGTCAAAAGT
GGACAGAAGATACATTACGTCATTCACTAACGGATCATACTCCTTAAACT
ACCTATGGTCTGCGAATCCGACTACAGTATTGCGTCATCTTTTTACAtat
cttttttatcatttttccaatcaactattttgtattttgattttgaggtG
TTTGCAAAATTACTCAGCGAGAATTCTCTTTCACGAGAAATGACATTCCT
CTGTTCTTTTAAAGTGTGTAAAATTTGATATATT
Run BLAST on NCBI

transcript from alignment at scaffold_71:1200122..1200405

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072256 ID=TCONS_00072256|Name=TCONS_00072256|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at scaffold_71:1200122..1200405 (Clytia hemisphaerica)
AATATATCAAATTTTACACACTTTAAAAGAACAGAGGAATGTCATTTCTC GTGAAAGAGAATTCTCGCTGAGTAATTTTGCAAACacctcaaaatcaaaa tacaaaatagttgattggaaaaatgataaaaaagataTGTAAAAAGATGA CGCAATACTGTAGTCGGATTCGCAGACCATAGGTAGTTTAAGGAGTATGA TCCGTTAGTGAATGACGTAATGTATCTTCTGTCCACTTTTGACCGGAACA TAATCGGAACCACGTAGCGGAAAAAAGTCATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044868XLOC_044868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072256-exon-scaffold_71-1491911889:1200122..1200405TCONS_00072256-exon-scaffold_71-1491911889:1200122..1200405Clytia hemisphaericaexon
TCONS_00072256-exon-scaffold_71-1510915933:1200122..1200405TCONS_00072256-exon-scaffold_71-1510915933:1200122..1200405Clytia hemisphaericaexon
TCONS_00072256-exon-scaffold_71-1575043694:1200122..1200405TCONS_00072256-exon-scaffold_71-1575043694:1200122..1200405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1200122..1200405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.457917 0 0 0 0 0.603723 0 0.395708 0.490149 2.37875 0 0.312305 0 0.533289 0.286151 0 0 0.499177 0 0 0 0 0.489497 0.50417 0 0 1.37436 1.5636 1.06204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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