|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072250 ID=TCONS_00072250|Name=TCONS_00072250|organism=Clytia hemisphaerica|type=transcript|length=1594bp
ctCTTGCTTTGTTGAGAAGATTAAggcggtttttagtgaggtcgAGATGG
ACTTTAATAAAATTATTTGTAGTTTTCCTTGACTTATAAACATCTGTTCG
TTTAGCAAAGGAAACGAACTTCACtatgattgtttttttctctttcccAA
CCCGGTGGGCACGATCACAAGATTAAGTTTATTTTTGCAAACATTAACAA
CGGTATTCAGGCAATCTTTAGCTGATTCGTTTTCCTTAGTCTCGATTCCA
TTTATCCTCAGACAGTATCTTCTGCTGTACTGTTCTTGAGAATCGGACTG
CTTAGTAATGAAAATCGACTGAACTAGACAAAACAGCATTCTTATCTAGC
AATTTGTTAACTGAGTCCTCCAATACAAAAAACTTTGTTTTCCAGCTTAA
GGATTCTTTCCTCATGATCCTGACCCTCAATGTCAAGAAGCAATCTTTCT
GTCTTGGTCATCAATACGTTTAGCAATCTCAATAAACATTTGTTTGAGTT
CACTCATGTCTTCTTTGGAAGCTAAAGACTTCGACAATTTAAGAAGCTTA
GCATCAAGTTTTGtatctaccttaaaggaagaaattttggcgaaagaaaa
tttggcggatttggccagaatccgccaattaagttcccgccaaaatttct
tatttccggcatccgccaaattaaatttccgccaaattaaactttttgaa
aatatgatctcttttaaggtggttttgcactttttttgctgtttcttacg
ccattttaaggataaaattttcagcaaacgccaaattaaattcccgccaa
atttagttttttcgtccatctgccaaattaaattccctctaaaaaacttt
tatggccatccgccaaattaaattcctgcaaaaatgtcttcctttaaggt
aataaATCTCCATATTTCTCAACATCAGAAGAACTTCTtgtatttttgtt
tgcttgactCCAATAAATCGAAAACAAAACCAGTAAAACAGCAGAGTAAT
AGTAAATGTATCAAAAAGATTTCATCcaaaaaactagcaaaaaactttca
acacGCCTTCAAAGTTTTGACACGTCAGCAGAGCATGTCCTTCCTCTTCT
GCAGTCGGTCGGTCTTCCGCGGTCGGTtcgacttattagtcttttagcag
gctaaaaagtgccaaaaaagctacattttattcaaagtttgaagttttac
agattttatattttgtcaagaatttttcgcgagcataaacctTCGCGAAT
GACCCTtgctagaatttttaaatacatttgCTTTtgcaaaaatggccaaa
attcgcgaaaatcgcgaaagtttctgctcgcgaaagtttgtacgcctaaa
gtaagaTTTGTGATGccacaaaaaaatataagtGAATGGGGTaagttcaa
aaataatttctggCTTTCCCTATAAAGTGAAATTGTTCTAAtactttgaa
ttttcagataGATATTATATTgcgaatttttttatattttctactatttt
tggaattttatgaaattagaaatcaattttTAGATTGTTATTATTTATTG
TGATGGACCGACCAATTAActaatttattataattttgtTGGGG Run BLAST on NCBI protein sequence of TCONS_00072250-protein >TCONS_00072250-protein ID=TCONS_00072250-protein|Name=TCONS_00072250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MDEKTKFGGNLIWRLLKILSLKWRKKQQKKCKTTLKEIIFSKSLIWRKFN
LADAGNKKFWRELNWRILAKSAKFSFAKISSFKVDTKLDAKLLKLSKSLA
SKEDMSELKQMFIEIAKRIDDQDRKIAS Run BLAST on NCBI transcript from alignment at scaffold_71:1065849..1067442 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072250 ID=TCONS_00072250|Name=TCONS_00072250|organism=Clytia hemisphaerica|type=transcript|length=1594bp|location=Sequence derived from alignment at scaffold_71:1065849..1067442 (Clytia hemisphaerica)
CCCCAacaaaattataataaattagTTAATTGGTCGGTCCATCACAATAA
ATAATAACAATCTAaaaattgatttctaatttcataaaattccaaaaata
gtagaaaatataaaaaaattcgcAATATAATATCtatctgaaaattcaaa
gtaTTAGAACAATTTCACTTTATAGGGAAAGccagaaattatttttgaac
ttACCCCATTCacttatatttttttgtggCATCACAAAtcttactttagg
cgtacaaactttcgcgagcagaaactttcgcgattttcgcgaattttggc
catttttgcaAAAGcaaatgtatttaaaaattctagcaAGGGTCATTCGC
GAaggtttatgctcgcgaaaaattcttgacaaaatataaaatctgtaaaa
cttcaaactttgaataaaatgtagcttttttggcactttttagcctgcta
aaagactaataagtcgaACCGACCGCGGAAGACCGACCGACTGCAGAAGA
GGAAGGACATGCTCTGCTGACGTGTCAAAACTTTGAAGGCgtgttgaaag
ttttttgctagttttttgGATGAAATCTTTTTGATACATTTACTATTACT
CTGCTGTTTTACTGGTTTTGTTTTCGATTTATTGGagtcaagcaaacaaa
aatacaAGAAGTTCTTCTGATGTTGAGAAATATGGAGATttattacctta
aaggaagacatttttgcaggaatttaatttggcggatggccataaaagtt
ttttagagggaatttaatttggcagatggacgaaaaaactaaatttggcg
ggaatttaatttggcgtttgctgaaaattttatccttaaaatggcgtaag
aaacagcaaaaaaagtgcaaaaccaccttaaaagagatcatattttcaaa
aagtttaatttggcggaaatttaatttggcggatgccggaaataagaaat
tttggcgggaacttaattggcggattctggccaaatccgccaaattttct
ttcgccaaaatttcttcctttaaggtagataCAAAACTTGATGCTAAGCT
TCTTAAATTGTCGAAGTCTTTAGCTTCCAAAGAAGACATGAGTGAACTCA
AACAAATGTTTATTGAGATTGCTAAACGTATTGATGACCAAGACAGAAAG
ATTGCTTCTTGACATTGAGGGTCAGGATCATGAGGAAAGAATCCTTAAGC
TGGAAAACAAAGTTTTTTGTATTGGAGGACTCAGTTAACAAATTGCTAGA
TAAGAATGCTGTTTTGTCTAGTTCAGTCGATTTTCATTACTAAGCAGTCC
GATTCTCAAGAACAGTACAGCAGAAGATACTGTCTGAGGATAAATGGAAT
CGAGACTAAGGAAAACGAATCAGCTAAAGATTGCCTGAATACCGTTGTTA
ATGTTTGCAAAAATAAACTTAATCTTGTGATCGTGCCCACCGGGTTggga
aagagaaaaaaacaatcataGTGAAGTTCGTTTCCTTTGCTAAACGAACA
GATGTTTATAAGTCAAGGAAAACTACAAATAATTTTATTAAAGTCCATCT
cgacctcactaaaaaccgccTTAATCTTCTCAACAAAGCAAGag Coding sequence (CDS) from alignment at scaffold_71:1065849..1067442 >TCONS_00072250 ID=TCONS_00072250|Name=TCONS_00072250|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_71:1065849..1067442 (Clytia hemisphaerica)
atggacgaaaaaactaaatttggcgggaatttaatttggcgtttgctgaa
aattttatccttaaaatggcgtaagaaacagcaaaaaaagtgcaaaacca
ccttaaaagagatcatattttcaaaaagtttaatttggcggaaatttaat
ttggcggatgccggaaataagaaattttggcgggaacttaattggcggat
tctggccaaatccgccaaattttctttcgccaaaatttcttcctttaagg
tagataCAAAACTTGATGCTAAGCTTCTTAAATTGTCGAAGTCTTTAGCT
TCCAAAGAAGACATGAGTGAACTCAAACAAATGTTTATTGAGATTGCTAA
ACGTATTGATGACCAAGACAGAAAGATTGCTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072250-exon-scaffold_71-1491911889:1065849..1067442 | TCONS_00072250-exon-scaffold_71-1491911889:1065849..1067442 | Clytia hemisphaerica | exon |
| TCONS_00072250-exon-scaffold_71-1510915933:1065849..1067442 | TCONS_00072250-exon-scaffold_71-1510915933:1065849..1067442 | Clytia hemisphaerica | exon |
| TCONS_00072250-exon-scaffold_71-1575043694:1065849..1067442 | TCONS_00072250-exon-scaffold_71-1575043694:1065849..1067442 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1065849..1067442 . |
Blast
The following BLAST results are available for this feature:
|
