TCONS_00072249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072249
Unique NameTCONS_00072249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072249 ID=TCONS_00072249|Name=TCONS_00072249|organism=Clytia hemisphaerica|type=transcript|length=292bp
ACTTATATTCATTTCCTGATCAGAAACGGGCTCTTGAAAAACATTAACAA
GTGAGAAATTTATACCAATACCCAATATACGCGCTATGTTTTAATGAAAA
TGAGTGAAGTTTTTTTTGtggatttttttgttcattgtaGGATGATACTT
CTTATTTATAAGTAAAATATACGAtatgtaaattttgattttatgaaata
TGCACGCAGAATATCGGTTAAAAGGAAACATTTATCAAAGTGACTTATTT
CGGTTTTTAAGGTCCAATGTAATTATCCATCCTTGTTTCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_71:1046157..1046448

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072249 ID=TCONS_00072249|Name=TCONS_00072249|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at scaffold_71:1046157..1046448 (Clytia hemisphaerica)
TTCGAAACAAGGATGGATAATTACATTGGACCTTAAAAACCGAAATAAGT
CACTTTGATAAATGTTTCCTTTTAACCGATATTCTGCGTGCAtatttcat
aaaatcaaaatttacataTCGTATATTTTACTTATAAATAAGAAGTATCA
TCCtacaatgaacaaaaaaatccaCAAAAAAAACTTCACTCATTTTCATT
AAAACATAGCGCGTATATTGGGTATTGGTATAAATTTCTCACTTGTTAAT
GTTTTTCAAGAGCCCGTTTCTGATCAGGAAATGAATATAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044861XLOC_044861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072249-exon-scaffold_71-1491911889:1046157..1046448TCONS_00072249-exon-scaffold_71-1491911889:1046157..1046448Clytia hemisphaericaexon
TCONS_00072249-exon-scaffold_71-1510915933:1046157..1046448TCONS_00072249-exon-scaffold_71-1510915933:1046157..1046448Clytia hemisphaericaexon
TCONS_00072249-exon-scaffold_71-1575043694:1046157..1046448TCONS_00072249-exon-scaffold_71-1575043694:1046157..1046448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1046157..1046448 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.426039	0	0	0	0	0	0	0.512787	1.43606	2.22349	5.61124	0.283739	0.850035	2.35405	4.11262	2.33654	0	1.63905	0.452888	0.94783	0	2.41103	1.95395	1.33232	0	0.408235	1.75255	0.623456	8.51165	8.67203
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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