TCONS_00072245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072245
Unique NameTCONS_00072245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072245 ID=TCONS_00072245|Name=TCONS_00072245|organism=Clytia hemisphaerica|type=transcript|length=589bp
ggaaaattaaaatataatatctaatcagaaaattgaatatcttcttAGTT
CTTTGTTGGTTCAGTGATGTATTTTCCTTCGAATAAGCAAGCGTTTTCTT
GTTCGTTAAACATTAAGTTTCCTGGGCATGCAATACATCCAACAGTCAct
ccttcccaacatccaatgTACTGTCGTGATTGGTGTGGATCAGCAATGTT
TCCAGTGAATTCTGGTCCACGTTCTGGGCATTTGTCTGGACATTCGAAGG
TGGTTGCTGGTTCCCATGGTTTTGTGGTGACACATTCATCAGCTGAAGAG
TATAAACATTGGTTGCATCTTGGACTGAATTCCAAACTGAGTGGCCAACA
AGCTTGACAATAAGCACTTCCTCCAAGACATTGtaaaaagtagtttttgt
tgAGCTTATAGGTTGATGGATCAGAATATGCAAAATTTCCATCAGCTTTT
CCTTTACATAAAGTGTTTGGACAATCAACAGCTGGTGGTGTTGTTCCAGT
GATTGGAGGTGCCGTCAGAGCATTGCATGCTACCAAGGTTGTTGCCAAGA
GAATGAAAGTCTTCATTGTTGTTTGTTGAGCTCTTCTTT
Run BLAST on NCBI

protein sequence of Secreted chitin binding type domain containing protein

>TCONS_00072245-protein ID=TCONS_00072245-protein|Name=Secreted chitin binding type domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
RRAQQTTMKTFILLATTLVACNALTAPPITGTTPPAVDCPNTLCKGKADG
NFAYSDPSTYKLNKNYFLQCLGGSAYCQACWPLSLEFSPRCNQCLYSSAD
ECVTTKPWEPATTFECPDKCPERGPEFTGNIADPHQSRQYIGCWEGVTVG
CIACPGNLMFNEQENACLFEGKYITEPTKN
Run BLAST on NCBI

transcript from alignment at scaffold_71:942314..942902

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072245 ID=TCONS_00072245|Name=TCONS_00072245|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at scaffold_71:942314..942902 (Clytia hemisphaerica)
AAAGAAGAGCTCAACAAACAACAATGAAGACTTTCATTCTCTTGGCAACA
ACCTTGGTAGCATGCAATGCTCTGACGGCACCTCCAATCACTGGAACAAC
ACCACCAGCTGTTGATTGTCCAAACACTTTATGTAAAGGAAAAGCTGATG
GAAATTTTGCATATTCTGATCCATCAACCTATAAGCTcaacaaaaactac
tttttaCAATGTCTTGGAGGAAGTGCTTATTGTCAAGCTTGTTGGCCACT
CAGTTTGGAATTCAGTCCAAGATGCAACCAATGTTTATACTCTTCAGCTG
ATGAATGTGTCACCACAAAACCATGGGAACCAGCAACCACCTTCGAATGT
CCAGACAAATGCCCAGAACGTGGACCAGAATTCACTGGAAACATTGCTGA
TCCACACCAATCACGACAGTAcattggatgttgggaaggagTGACTGTTG
GATGTATTGCATGCCCAGGAAACTTAATGTTTAACGAACAAGAAAACGCT
TGCTTATTCGAAGGAAAATACATCACTGAACCAACAAAGAACTaagaaga
tattcaattttctgattagatattatattttaattttcc

Coding sequence (CDS) from alignment at scaffold_71:942314..942902

>TCONS_00072245 ID=TCONS_00072245|Name=TCONS_00072245|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_71:942314..942902 (Clytia hemisphaerica)
AGAAGAGCTCAACAAACAACAATGAAGACTTTCATTCTCTTGGCAACAAC
CTTGGTAGCATGCAATGCTCTGACGGCACCTCCAATCACTGGAACAACAC
CACCAGCTGTTGATTGTCCAAACACTTTATGTAAAGGAAAAGCTGATGGA
AATTTTGCATATTCTGATCCATCAACCTATAAGCTcaacaaaaactactt
tttaCAATGTCTTGGAGGAAGTGCTTATTGTCAAGCTTGTTGGCCACTCA
GTTTGGAATTCAGTCCAAGATGCAACCAATGTTTATACTCTTCAGCTGAT
GAATGTGTCACCACAAAACCATGGGAACCAGCAACCACCTTCGAATGTCC
AGACAAATGCCCAGAACGTGGACCAGAATTCACTGGAAACATTGCTGATC
CACACCAATCACGACAGTAcattggatgttgggaaggagTGACTGTTGGA
TGTATTGCATGCCCAGGAAACTTAATGTTTAACGAACAAGAAAACGCTTG
CTTATTCGAAGGAAAATACATCACTGAACCAACAAAGAACTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044857XLOC_044857Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Secreted chitin binding type domain containing proteinTCONS_00072245-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072245-exon-scaffold_71-1491911889:942314..942902TCONS_00072245-exon-scaffold_71-1491911889:942314..942902Clytia hemisphaericaexon
TCONS_00072245-exon-scaffold_71-1510915933:942314..942902TCONS_00072245-exon-scaffold_71-1510915933:942314..942902Clytia hemisphaericaexon
TCONS_00072245-exon-scaffold_71-1575043694:942314..942902TCONS_00072245-exon-scaffold_71-1575043694:942314..942902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:942314..942902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0910431	0	0	0.144031	0	0	0	0.0786748	0	0	0.683968	6.35639	1.11538	231.707	48.261	0.0711427	0.404914	0	0.103854	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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