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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072242 ID=TCONS_00072242|Name=TCONS_00072242|organism=Clytia hemisphaerica|type=transcript|length=1151bp
GCattaatagaaattttccttgctctcgtgacgatcatgaaaattaccaa
aaaaggtttgttcaccatgcaaatatcgcgaaaatagcccaaatcatgtC
TCGATCGATTTCCCGATAACGCATCACGCAATTGGctgggtacaactttt
taaaattgtatcataaaatggctaactttctcattcccgggaaaacatac
ctgccccgtctccgggatctttttgcttctaggcgtctccggctaaaatc
ggtgttaaatctacttttgtggcgttttggtccttttcttTTACACTAGA
aatcggaaagtttcgctgggaataaggaagtttagcaattctacggtatg
tagtgtaaaaaacctttcgcttgcgaacacgagattttcgtatcgtgcgt
aaccccttttacaattgatacaAAGATGCATTTTTTAAGTTAGAAATTGG
AATAAAAAGACTTCCCACAGCAGGTGCCTAGCCTTGCTAATAAGTTATAA
CCGCTCTGACCCTTTACACCATGCTTCTTCCTTTTTGTAACTAACCCTTT
TTTCTTTCATCGAGTATAGGTTAAGTTAGTGTTCATTCAAATTGAAACCG
TTACTCGATATCGATAGATCggaaatatatttttgtcaGCATAGTTGGTG
CTcatagaagaagaagaagagcacTAGGCCTTCCCTAAAGGGAATAGGCC
TCCCGAAAAAAAGTCGAGCGAATCACAGCGCTCATATGGGTGCGCTAAAA
CCAAGTTTCTTGCTAACACCAGAAGCACCGAGAGAAAGAGTGAGTTACTA
TGCAGTTACAGCTGCAGCCCAAGAATAAGCCCAAATCCCAGCATTGATTT
GAATTAAGCCCCAGCAGGAGTGTTTGTGACTTAGAAACTTTCTGATATCC
ATTGCTAGCATTTAGAGAATTCTAGGGGGACCTTTGGTAATGCCCAAAGC
ACCCAGACAAACTTATCGACGGTATGTTTTTAAGATAGccgaaatgcact
gtaacgGTCAACAGAAGTAAAGAAACATTGTAAGGTAGAAATATCAGAAA
TCTGTGAGTGCCATGGGTAcaaatcactgacctttatatatccctggacc
aagctatatccgccatctttgatcgaggtttttttcaaagttgatacccg
c Run BLAST on NCBI transcript from alignment at scaffold_71:743325..744475 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072242 ID=TCONS_00072242|Name=TCONS_00072242|organism=Clytia hemisphaerica|type=transcript|length=1151bp|location=Sequence derived from alignment at scaffold_71:743325..744475 (Clytia hemisphaerica)
gcgggtatcaactttgaaaaaaacctcgatcaaagatggcggatatagct
tggtccagggatatataaaggtcagtgatttgTACCCATGGCACTCACAG
ATTTCTGATATTTCTACCTTACAATGTTTCTTTACTTCTGTTGACcgtta
cagtgcatttcggCTATCTTAAAAACATACCGTCGATAAGTTTGTCTGGG
TGCTTTGGGCATTACCAAAGGTCCCCCTAGAATTCTCTAAATGCTAGCAA
TGGATATCAGAAAGTTTCTAAGTCACAAACACTCCTGCTGGGGCTTAATT
CAAATCAATGCTGGGATTTGGGCTTATTCTTGGGCTGCAGCTGTAACTGC
ATAGTAACTCACTCTTTCTCTCGGTGCTTCTGGTGTTAGCAAGAAACTTG
GTTTTAGCGCACCCATATGAGCGCTGTGATTCGCTCGACTTTTTTTCGGG
AGGCCTATTCCCTTTAGGGAAGGCCTAgtgctcttcttcttcttctatgA
GCACCAACTATGCtgacaaaaatatatttccGATCTATCGATATCGAGTA
ACGGTTTCAATTTGAATGAACACTAACTTAACCTATACTCGATGAAAGAA
AAAAGGGTTAGTTACAAAAAGGAAGAAGCATGGTGTAAAGGGTCAGAGCG
GTTATAACTTATTAGCAAGGCTAGGCACCTGCTGTGGGAAGTCTTTTTAT
TCCAATTTCTAACTTAAAAAATGCATCTTtgtatcaattgtaaaaggggt
tacgcacgatacgaaaatctcgtgttcgcaagcgaaaggttttttacact
acataccgtagaattgctaaacttccttattcccagcgaaactttccgat
tTCTAGTGTAAaagaaaaggaccaaaacgccacaaaagtagatttaacac
cgattttagccggagacgcctagaagcaaaaagatcccggagacggggca
ggtatgttttcccgggaatgagaaagttagccattttatgatacaatttt
aaaaagttgtacccagCCAATTGCGTGATGCGTTATCGGGAAATCGATCG
AGacatgatttgggctattttcgcgatatttgcatggtgaacaaaccttt
tttggtaattttcatgatcgtcacgagagcaaggaaaatttctattaatG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072242-exon-scaffold_71-1491911889:743325..744475 | TCONS_00072242-exon-scaffold_71-1491911889:743325..744475 | Clytia hemisphaerica | exon |
| TCONS_00072242-exon-scaffold_71-1510915933:743325..744475 | TCONS_00072242-exon-scaffold_71-1510915933:743325..744475 | Clytia hemisphaerica | exon |
| TCONS_00072242-exon-scaffold_71-1575043694:743325..744475 | TCONS_00072242-exon-scaffold_71-1575043694:743325..744475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:743325..744475 . |
Blast
The following BLAST results are available for this feature:
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