TCONS_00072237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072237
Unique NameTCONS_00072237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072237 ID=TCONS_00072237|Name=TCONS_00072237|organism=Clytia hemisphaerica|type=transcript|length=702bp
AACGATTTATCTTTACATAGATCGTGGACGGTAGAAGAGAGATGGTTTCT
CCGCAGCATGTCACAGTTAAAATCTCCTAGTATAAAAACTTCCGAGTTCT
TTGGGATTTTACTGAAGCAAGTTATTAAAAATGTCTTATATTTTTCTACC
AACTCTACATTATTACCTTTGATTGGCGGACGGTACAATGAACAAACATA
TATAGATTTAGCCTTTTTCCGTTTTATCTCAACCCAAAGAATTTCAAGAG
CCTTGTTGGAAATATTTGCTTGCTTCTTTGGAGTCAGATGATCAGAGGCA
TAAATGAGGACACCCCCTCCATGACAGCTTCTATCCTGTCTAAAGGTTTT
ATATCCGGGAATAGAGATTTCAGAGGTTGCGACGGATGAATCAATTTTGG
TTTCGTTTAGGCAGAGAATATCAAATTTATGTTGTCGAAGAAAGATTTTG
AGAAAGGTTATCTTAGAACGAAGACCGTTAATATTCAAGTGTGCAATATT
CAGACTACCTTCTTGAGTTAACTTTAGGTTTTCATTTAGATTCAACTCAA
TAGGTACTTCTTCATCTTCGATGGTTTCAACAAAGTCGTCGTCGGGAAAA
GGTAGAGCGTTAAGATAACAGTTCTGACAAGCATAGGATTTTTCATTTCG
CAAaatctttttatgaaaagttacaGTGATACCAGAGCAGCTCCTATGAA
AG
Run BLAST on NCBI

protein sequence of TCONS_00072237-protein

>TCONS_00072237-protein ID=TCONS_00072237-protein|Name=TCONS_00072237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
FHRSCSGITVTFHKKILRNEKSYACQNCYLNALPFPDDDFVETIEDEEVP
IELNLNENLKLTQEGSLNIAHLNINGLRSKITFLKIFLRQHKFDILCLNE
TKIDSSVATSEISIPGYKTFRQDRSCHGGGVLIYASDHLTPKKQANISNK
ALEILWVEIKRKKAKSIYVCSLYRPPIKGNNVELVEKYKTFLITCFSKIP
KNSEVFILGDFNCDMLRRNHLSSTVHDLCKDKS
Run BLAST on NCBI

transcript from alignment at scaffold_71:340580..341281

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072237 ID=TCONS_00072237|Name=TCONS_00072237|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at scaffold_71:340580..341281 (Clytia hemisphaerica)
CTTTCATAGGAGCTGCTCTGGTATCACtgtaacttttcataaaaagattT
TGCGAAATGAAAAATCCTATGCTTGTCAGAACTGTTATCTTAACGCTCTA
CCTTTTCCCGACGACGACTTTGTTGAAACCATCGAAGATGAAGAAGTACC
TATTGAGTTGAATCTAAATGAAAACCTAAAGTTAACTCAAGAAGGTAGTC
TGAATATTGCACACTTGAATATTAACGGTCTTCGTTCTAAGATAACCTTT
CTCAAAATCTTTCTTCGACAACATAAATTTGATATTCTCTGCCTAAACGA
AACCAAAATTGATTCATCCGTCGCAACCTCTGAAATCTCTATTCCCGGAT
ATAAAACCTTTAGACAGGATAGAAGCTGTCATGGAGGGGGTGTCCTCATT
TATGCCTCTGATCATCTGACTCCAAAGAAGCAAGCAAATATTTCCAACAA
GGCTCTTGAAATTCTTTGGGTTGAGATAAAACGGAAAAAGGCTAAATCTA
TATATGTTTGTTCATTGTACCGTCCGCCAATCAAAGGTAATAATGTAGAG
TTGGTAGAAAAATATAAGACATTTTTAATAACTTGCTTCAGTAAAATCCC
AAAGAACTCGGAAGTTTTTATACTAGGAGATTTTAACTGTGACATGCTGC
GGAGAAACCATCTCTCTTCTACCGTCCACGATCTATGTAAAGATAAATCG
TT

Coding sequence (CDS) from alignment at scaffold_71:340580..341281

>TCONS_00072237 ID=TCONS_00072237|Name=TCONS_00072237|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_71:340580..341281 (Clytia hemisphaerica)
TTTCATAGGAGCTGCTCTGGTATCACtgtaacttttcataaaaagattTT
GCGAAATGAAAAATCCTATGCTTGTCAGAACTGTTATCTTAACGCTCTAC
CTTTTCCCGACGACGACTTTGTTGAAACCATCGAAGATGAAGAAGTACCT
ATTGAGTTGAATCTAAATGAAAACCTAAAGTTAACTCAAGAAGGTAGTCT
GAATATTGCACACTTGAATATTAACGGTCTTCGTTCTAAGATAACCTTTC
TCAAAATCTTTCTTCGACAACATAAATTTGATATTCTCTGCCTAAACGAA
ACCAAAATTGATTCATCCGTCGCAACCTCTGAAATCTCTATTCCCGGATA
TAAAACCTTTAGACAGGATAGAAGCTGTCATGGAGGGGGTGTCCTCATTT
ATGCCTCTGATCATCTGACTCCAAAGAAGCAAGCAAATATTTCCAACAAG
GCTCTTGAAATTCTTTGGGTTGAGATAAAACGGAAAAAGGCTAAATCTAT
ATATGTTTGTTCATTGTACCGTCCGCCAATCAAAGGTAATAATGTAGAGT
TGGTAGAAAAATATAAGACATTTTTAATAACTTGCTTCAGTAAAATCCCA
AAGAACTCGGAAGTTTTTATACTAGGAGATTTTAACTGTGACATGCTGCG
GAGAAACCATCTCTCTTCTACCGTCCACGATCTATGTAAAGATAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044849XLOC_044849Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072237-proteinTCONS_00072237-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072237-exon-scaffold_71-1491911889:340580..341281TCONS_00072237-exon-scaffold_71-1491911889:340580..341281Clytia hemisphaericaexon
TCONS_00072237-exon-scaffold_71-1510915933:340580..341281TCONS_00072237-exon-scaffold_71-1510915933:340580..341281Clytia hemisphaericaexon
TCONS_00072237-exon-scaffold_71-1575043694:340580..341281TCONS_00072237-exon-scaffold_71-1575043694:340580..341281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:340580..341281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205187	0.0860866	0.460321	0	0.679323	0.187938	0.502026	0.718517	0.317996	0.175276	0.192722	0	0.163343	0	0.375182	0.282372	0	0	0	0.305983	0.281899	0	0	0	0.153505	0.491048	0.637126	0.416465	0.436778	0.301113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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