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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072234 ID=TCONS_00072234|Name=TCONS_00072234|organism=Clytia hemisphaerica|type=transcript|length=1612bp
ACTGTTACGTCATTGTCAGCAaaattcaaagaatatattgaaCTAGAACC
ATCGAAAGTCATCTTTGAAGCTGCAAAGAGGGATTATGATACCATTATCC
AACTATGGGAAACCTACAAAGCCCTTATTATCAAAGAGTTCAAAGATCGT
GAGATGGATAAAATTGATTCATTCAACAAATCGCAACTCAACATCAATCT
TGGCAAGTTCAGTGGGTATGAATCTTCAACCAACATCTACGACTTCAAAA
CCAATTTCAATAAATTCTTTGCTCAATCTGTACCTACACATCTCCAAGCT
GATTTGCTCAAAAACAACTACTTGGAGAAGGATGCACTAACACTCGTTAA
AAATGTGTTAGAGATCAGAGATATTTGGGAACGCCTCAAAGAAGCCTACG
GAGACACAAAGATACTTCTGACAAACAAAATATCAGAACTGACCGATTGT
GAAACAGTCAAATCCAAAGATCCAACCAAAATCATCAATAGCATCAGCAA
GATTTCCAACTTGATGAGAGACCTGATGCAATTATCCACTGATCACCACA
TCGAGAACGAGCTGTATCATTCTGACGCATTCGATCAAGCTTATAATCTA
CTTGGTGAGGAGAGATCAATCAGATGGCTAACCCTCAGCTGTGAGATACC
AAAGGAAGGTAGATGGAAGTGGAGACAAATGCTGGACTTTCTAGATAAGG
AAGTCAAGATGCAACAACAACGAGCGATTCTTCAATCAAAGTCAAAGAAG
CAGGAACAATCAAAACAACCAACCAGACGTGGATCTGGCCATCAGACAGA
CTCAAATCCACCAGCAGCAAAACCACAGGCGAATCCTCCACCATGGAATC
CACCTCCATCCAGTCAACCAACGAACAATCAAACCATCTGTTTCATTTGT
GGAAAGAATGACCATGTCCAAACAAGAGGTCCACGTGGTATGAAACTGAT
TCAATATTTCTCATGCAAAACCTTCGTTGATTTGACACCGGCTGAACGTC
TTAGCACACTGAAATCCAAGAATCTGTGCTTTCAATGCTTGTTCCCTGGA
GCAATTGCCAACCAAGAGAAGCATCGCGATGGTCACTGTCAACATACATT
CGTTTGTCAACACACCTACCATCAATCATTTCCAATGAAGAAGCACATTC
TTGTTTGTGAGAAACACAAGAATAACACACAGAACCAGGAAACGCTCGAG
CGGTACAAATCGAGATGTATCATCAATCAACCAGTCCTGAATTTCTCCAA
AGAGATTAAACTATCTTTCCATGCCAATATTGAAGATAGCAACACAGATG
CCATCTATATGTTCCAAAACATCCTTGTTGACAAAAAGGTGTATAATATC
TTTTATGATACTGGATGTAGTGATTTCATCAGCCGCTTCAAAGCCGTTAA
ACAACTCAAGACACGTGCCAAACAAGTTTATGCTGGATCAATACAAACCA
ATGGTGTTGGCGATCAAGTCAGCCTATCAAGCAATGGCATCTACTCTGTC
AACATACCTCTCGCAAATGGAGAAGATGCAACCATGATTGGAGTTTGTAT
GGACAAGCTCACACACGACTTTCCAATGTACAAGCTCAATGGTGATGTTA
TCAATGACATTC Run BLAST on NCBI protein sequence of TCONS_00072234-protein >TCONS_00072234-protein ID=TCONS_00072234-protein|Name=TCONS_00072234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp
TVTSLSAKFKEYIELEPSKVIFEAAKRDYDTIIQLWETYKALIIKEFKDR
EMDKIDSFNKSQLNINLGKFSGYESSTNIYDFKTNFNKFFAQSVPTHLQA
DLLKNNYLEKDALTLVKNVLEIRDIWERLKEAYGDTKILLTNKISELTDC
ETVKSKDPTKIINSISKISNLMRDLMQLSTDHHIENELYHSDAFDQAYNL
LGEERSIRWLTLSCEIPKEGRWKWRQMLDFLDKEVKMQQQRAILQSKSKK
QEQSKQPTRRGSGHQTDSNPPAAKPQANPPPWNPPPSSQPTNNQTICFIC
GKNDHVQTRGPRGMKLIQYFSCKTFVDLTPAERLSTLKSKNLCFQCLFPG
AIANQEKHRDGHCQHTFVCQHTYHQSFPMKKHILVCEKHKNNTQNQETLE
RYKSRCIINQPVLNFSKEIKLSFHANIEDSNTDAIYMFQNILVDKKVYNI
FYDTGCSDFISRFKAVKQLKTRAKQVYAGSIQTNGVGDQVSLSSNGIYSV
NIPLANGEDATMIGVCMDKLTHDFPMYKLNGDVINDI Run BLAST on NCBI transcript from alignment at scaffold_71:213017..214628 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072234 ID=TCONS_00072234|Name=TCONS_00072234|organism=Clytia hemisphaerica|type=transcript|length=1612bp|location=Sequence derived from alignment at scaffold_71:213017..214628 (Clytia hemisphaerica)
GAATGTCATTGATAACATCACCATTGAGCTTGTACATTGGAAAGTCGTGT
GTGAGCTTGTCCATACAAACTCCAATCATGGTTGCATCTTCTCCATTTGC
GAGAGGTATGTTGACAGAGTAGATGCCATTGCTTGATAGGCTGACTTGAT
CGCCAACACCATTGGTTTGTATTGATCCAGCATAAACTTGTTTGGCACGT
GTCTTGAGTTGTTTAACGGCTTTGAAGCGGCTGATGAAATCACTACATCC
AGTATCATAAAAGATATTATACACCTTTTTGTCAACAAGGATGTTTTGGA
ACATATAGATGGCATCTGTGTTGCTATCTTCAATATTGGCATGGAAAGAT
AGTTTAATCTCTTTGGAGAAATTCAGGACTGGTTGATTGATGATACATCT
CGATTTGTACCGCTCGAGCGTTTCCTGGTTCTGTGTGTTATTCTTGTGTT
TCTCACAAACAAGAATGTGCTTCTTCATTGGAAATGATTGATGGTAGGTG
TGTTGACAAACGAATGTATGTTGACAGTGACCATCGCGATGCTTCTCTTG
GTTGGCAATTGCTCCAGGGAACAAGCATTGAAAGCACAGATTCTTGGATT
TCAGTGTGCTAAGACGTTCAGCCGGTGTCAAATCAACGAAGGTTTTGCAT
GAGAAATATTGAATCAGTTTCATACCACGTGGACCTCTTGTTTGGACATG
GTCATTCTTTCCACAAATGAAACAGATGGTTTGATTGTTCGTTGGTTGAC
TGGATGGAGGTGGATTCCATGGTGGAGGATTCGCCTGTGGTTTTGCTGCT
GGTGGATTTGAGTCTGTCTGATGGCCAGATCCACGTCTGGTTGGTTGTTT
TGATTGTTCCTGCTTCTTTGACTTTGATTGAAGAATCGCTCGTTGTTGTT
GCATCTTGACTTCCTTATCTAGAAAGTCCAGCATTTGTCTCCACTTCCAT
CTACCTTCCTTTGGTATCTCACAGCTGAGGGTTAGCCATCTGATTGATCT
CTCCTCACCAAGTAGATTATAAGCTTGATCGAATGCGTCAGAATGATACA
GCTCGTTCTCGATGTGGTGATCAGTGGATAATTGCATCAGGTCTCTCATC
AAGTTGGAAATCTTGCTGATGCTATTGATGATTTTGGTTGGATCTTTGGA
TTTGACTGTTTCACAATCGGTCAGTTCTGATATTTTGTTTGTCAGAAGTA
TCTTTGTGTCTCCGTAGGCTTCTTTGAGGCGTTCCCAAATATCTCTGATC
TCTAACACATTTTTAACGAGTGTTAGTGCATCCTTCTCCAAGTAGTTGTT
TTTGAGCAAATCAGCTTGGAGATGTGTAGGTACAGATTGAGCAAAGAATT
TATTGAAATTGGTTTTGAAGTCGTAGATGTTGGTTGAAGATTCATACCCA
CTGAACTTGCCAAGATTGATGTTGAGTTGCGATTTGTTGAATGAATCAAT
TTTATCCATCTCACGATCTTTGAACTCTTTGATAATAAGGGCTTTGTAGG
TTTCCCATAGTTGGATAATGGTATCATAATCCCTCTTTGCAGCTTCAAAG
ATGACTTTCGATGGTTCTAGttcaatatattctttgaatttTGCTGACAA
TGACGTAACAGT Coding sequence (CDS) from alignment at scaffold_71:213017..214628 >TCONS_00072234 ID=TCONS_00072234|Name=TCONS_00072234|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_71:213017..214628 (Clytia hemisphaerica)
AATGTCATTGATAACATCACCATTGAGCTTGTACATTGGAAAGTCGTGTG
TGAGCTTGTCCATACAAACTCCAATCATGGTTGCATCTTCTCCATTTGCG
AGAGGTATGTTGACAGAGTAGATGCCATTGCTTGATAGGCTGACTTGATC
GCCAACACCATTGGTTTGTATTGATCCAGCATAAACTTGTTTGGCACGTG
TCTTGAGTTGTTTAACGGCTTTGAAGCGGCTGATGAAATCACTACATCCA
GTATCATAAAAGATATTATACACCTTTTTGTCAACAAGGATGTTTTGGAA
CATATAGATGGCATCTGTGTTGCTATCTTCAATATTGGCATGGAAAGATA
GTTTAATCTCTTTGGAGAAATTCAGGACTGGTTGATTGATGATACATCTC
GATTTGTACCGCTCGAGCGTTTCCTGGTTCTGTGTGTTATTCTTGTGTTT
CTCACAAACAAGAATGTGCTTCTTCATTGGAAATGATTGATGGTAGGTGT
GTTGACAAACGAATGTATGTTGACAGTGACCATCGCGATGCTTCTCTTGG
TTGGCAATTGCTCCAGGGAACAAGCATTGAAAGCACAGATTCTTGGATTT
CAGTGTGCTAAGACGTTCAGCCGGTGTCAAATCAACGAAGGTTTTGCATG
AGAAATATTGAATCAGTTTCATACCACGTGGACCTCTTGTTTGGACATGG
TCATTCTTTCCACAAATGAAACAGATGGTTTGATTGTTCGTTGGTTGACT
GGATGGAGGTGGATTCCATGGTGGAGGATTCGCCTGTGGTTTTGCTGCTG
GTGGATTTGAGTCTGTCTGATGGCCAGATCCACGTCTGGTTGGTTGTTTT
GATTGTTCCTGCTTCTTTGACTTTGATTGAAGAATCGCTCGTTGTTGTTG
CATCTTGACTTCCTTATCTAGAAAGTCCAGCATTTGTCTCCACTTCCATC
TACCTTCCTTTGGTATCTCACAGCTGAGGGTTAGCCATCTGATTGATCTC
TCCTCACCAAGTAGATTATAAGCTTGATCGAATGCGTCAGAATGATACAG
CTCGTTCTCGATGTGGTGATCAGTGGATAATTGCATCAGGTCTCTCATCA
AGTTGGAAATCTTGCTGATGCTATTGATGATTTTGGTTGGATCTTTGGAT
TTGACTGTTTCACAATCGGTCAGTTCTGATATTTTGTTTGTCAGAAGTAT
CTTTGTGTCTCCGTAGGCTTCTTTGAGGCGTTCCCAAATATCTCTGATCT
CTAACACATTTTTAACGAGTGTTAGTGCATCCTTCTCCAAGTAGTTGTTT
TTGAGCAAATCAGCTTGGAGATGTGTAGGTACAGATTGAGCAAAGAATTT
ATTGAAATTGGTTTTGAAGTCGTAGATGTTGGTTGAAGATTCATACCCAC
TGAACTTGCCAAGATTGATGTTGAGTTGCGATTTGTTGAATGAATCAATT
TTATCCATCTCACGATCTTTGAACTCTTTGATAATAAGGGCTTTGTAGGT
TTCCCATAGTTGGATAATGGTATCATAATCCCTCTTTGCAGCTTCAAAGA
TGACTTTCGATGGTTCTAGttcaatatattctttgaatttTGCTGACAAT
GACGTAACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072234-exon-scaffold_71-1491911889:213017..214628 | TCONS_00072234-exon-scaffold_71-1491911889:213017..214628 | Clytia hemisphaerica | exon |
| TCONS_00072234-exon-scaffold_71-1510915933:213017..214628 | TCONS_00072234-exon-scaffold_71-1510915933:213017..214628 | Clytia hemisphaerica | exon |
| TCONS_00072234-exon-scaffold_71-1575043694:213017..214628 | TCONS_00072234-exon-scaffold_71-1575043694:213017..214628 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:213017..214628 . |
Blast
The following BLAST results are available for this feature:
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