TCONS_00072232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072232
Unique NameTCONS_00072232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072232 ID=TCONS_00072232|Name=TCONS_00072232|organism=Clytia hemisphaerica|type=transcript|length=690bp
GAAGTGGGTGAACGATAAGGGAAACCAGTGTATTAAGTTTTGGCATTTGT
TTATTGGCTAACCACTCCTATACAAATAATTTTGGGGATAAAATATTTCC
CAACCTTGAAAATTCGATTTCAAGCGatgttttatcatttttagaaataa
ttaCAAGAGCATAATTGCATTTCCTATTTACAAAACAATATAACTTTGTA
CATAAACTGCGGTGGgaggaaaaaaatattatatttcacCGTCCCTCTCT
TAAAGCATTTTCAAGGAGTgtggatgaaaatttttttgacaacgGAACTT
ATGACACTGACGCACTTCCGGTTGGCACAcgctttcaaaacaaaaaatgt
cctCCCTATTTTTGAATGCCAGTTAATCTCGGTTTCAGCTTTTTTGTTAT
tataaatttttgataattttgaaaaagttaataattttttttttcaattc
atgattCTCCGAttggaatattttttcaaaagttataaaaaagaaTTGGC
TGGTAGagatcaaaataattttcttaacacatttttttccatcataaaat
aaattttcctttctATTGTCATAGCGGTGCAAAAGTGTCAACAATGGTCT
GGGAACTAGTTTGGATTTTGAAGTATCAGTACGAGCTCTCTCGATGCAAG
AGTTTCAAGGATCTCAAGATTGGATaaacattcaatattt
Run BLAST on NCBI

transcript from alignment at scaffold_71:130887..131576

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072232 ID=TCONS_00072232|Name=TCONS_00072232|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at scaffold_71:130887..131576 (Clytia hemisphaerica)
aaatattgaatgtttATCCAATCTTGAGATCCTTGAAACTCTTGCATCGA GAGAGCTCGTACTGATACTTCAAAATCCAAACTAGTTCCCAGACCATTGT TGACACTTTTGCACCGCTATGACAATagaaaggaaaatttattttatgat ggaaaaaaatgtgttaagaaaattattttgatctCTACCAGCCAAttctt ttttataacttttgaaaaaatattccaaTCGGAGaatcatgaattgaaaa aaaaaattattaactttttcaaaattatcaaaaatttataATAACAAAAA AGCTGAAACCGAGATTAACTGGCATTCAAAAATAGGGaggacattttttg ttttgaaagcgTGTGCCAACCGGAAGTGCGTCAGTGTCATAAGTTCcgtt gtcaaaaaaattttcatccacACTCCTTGAAAATGCTTTAAGAGAGGGAC GgtgaaatataatatttttttcctcCCACCGCAGTTTATGTACAAAGTTA TATTGTTTTGTAAATAGGAAATGCAATTATGCTCTTGtaattatttctaa aaatgataaaacatCGCTTGAAATCGAATTTTCAAGGTTGGGAAATATTT TATCCCCAAAATTATTTGTATAGGAGTGGTTAGCCAATAAACAAATGCCA AAACTTAATACACTGGTTTCCCTTATCGTTCACCCACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044844XLOC_044844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072232-exon-scaffold_71-1491911889:130887..131576TCONS_00072232-exon-scaffold_71-1491911889:130887..131576Clytia hemisphaericaexon
TCONS_00072232-exon-scaffold_71-1510915933:130887..131576TCONS_00072232-exon-scaffold_71-1510915933:130887..131576Clytia hemisphaericaexon
TCONS_00072232-exon-scaffold_71-1575043694:130887..131576TCONS_00072232-exon-scaffold_71-1575043694:130887..131576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:130887..131576 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0914609 0.15662 0.0928618 0.105101 0.198934 0 0.0948279 0.284284 0.273052 0.24736 0.0896409 0.152016 1.20786 1.53581 1.38543 4.16088 0.0566992 0.234627 0.610281 0 0 0.112788 0.0845698 0.0883619 0.203139 0 0.230978 0 0.736794 0.758111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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