TCONS_00072231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072231
Unique NameTCONS_00072231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072231 ID=TCONS_00072231|Name=TCONS_00072231|organism=Clytia hemisphaerica|type=transcript|length=1038bp
TGCATAACAAGTTTTCATAGCGAATGTAACAATAACAATGAGTTCTatga
caaaaagttttcagtcAATCAGACAGGAAGAGGAGCTTGTCAAGAGAAGG
TCGAACAGTTTTTTCGATACTGAATTTAACAAGCAACAAAAAATGACGGA
TAAACAAGCGCGTAAAGGAATCAGTGAAGTTGTACACTACGATTTACCAA
CAAAAGCCAAAGATAGACCACCATTCAACTTTGGTGGTGTTAAAAATGAC
CATCATCCAGCCATCATAACTGAAGAGAaagatcatcatcatcatattAT
GAAACaaagaagtttttcaaatttatcttcTAACCATGGTAAATCAATTT
TATCGGGAACTGGAGATTTAGGCAACGATTATTCACCAATGAGCTACCAC
CAGAATACGTACAACATGGACAGTAAAAACCCGTTCGACGTTAAAAAAGT
ACGACAACTCGTTAACGACGAATTAGCCATCCTCGTCAAATCCAAAACTC
AAGAACACGCAAAAATGCCTACAAGTGCAGAATGTTTAAAAACAATTGAG
AGTATTAAACTGAAGGTGAAAAGCATGGGTTTTGATCGATATCGTCATAT
AGTGAATATTACGGTATCGGAAAATTACCATCANTGGGTTTTGATCGATA
TCGTCATATAGTGAATATTACGGTATCGGAGAATTACCATCAGACGATGA
GAATAGCAAGTCGTTTCTTTTGGGATGTTGACAGGGATAAGTATATATCA
CAGACCATTACTAATAAACATTTTCATTTGGTTTGTGTTGTTTATGCTGT
CTATTTCGAATGACTTTACTAAACGAACTTTTGTAAATAATGTGTAAATT
AAAGTTTATCTTTACATGAGTGtacccgtttcatatcagacccATATTTC
AAattaggacagtgtctgcctattgttatattatgctgatataagcaaac
aaatgttttacttttcctctttctaactaatcttgctccacatccgtgtc
aattctatgtgaaaaagcttgtgaattaaaattgatga
Run BLAST on NCBI

protein sequence of TCONS_00072231-protein

>TCONS_00072231-protein ID=TCONS_00072231-protein|Name=TCONS_00072231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MSSMTKSFQSIRQEEELVKRRSNSFFDTEFNKQQKMTDKQARKGISEVVH
YDLPTKAKDRPPFNFGGVKNDHHPAIITEEKDHHHHIMKQRSFSNLSSNH
GKSILSGTGDLGNDYSPMSYHQNTYNMDSKNPFDVKKVRQLVNDELAILV
KSKTQEHAKMPTSAECLKTIESIKLKVKSMGFDRYRHIVNITVSENYHXW
VLIDIVI
Run BLAST on NCBI

transcript from alignment at scaffold_71:103445..104482

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072231 ID=TCONS_00072231|Name=TCONS_00072231|organism=Clytia hemisphaerica|type=transcript|length=1038bp|location=Sequence derived from alignment at scaffold_71:103445..104482 (Clytia hemisphaerica)
tcatcaattttaattcacaagctttttcacatagaattgacacggatgtg gagcaagattagttagaaagaggaaaagtaaaacatttgtttgcttatat cagcataatataacaataggcagacactgtcctaatTTGAAATATgggtc tgatatgaaacgggtaCACTCATGTAAAGATAAACTTTAATTTACACATT ATTTACAAAAGTTCGTTTAGTAAAGTCATTCGAAATAGACAGCATAAACA ACACAAACCAAATGAAAATGTTTATTAGTAATGGTCTGTGATATATACTT ATCCCTGTCAACATCCCAAAAGAAACGACTTGCTATTCTCATCGTCTGAT GGTAATTCTCCGATACCGTAATATTCACTATATGACGATATCGATCAAAA CCCANTGATGGTAATTTTCCGATACCGTAATATTCACTATATGACGATAT CGATCAAAACCCATGCTTTTCACCTTCAGTTTAATACTCTCAATTGTTTT TAAACATTCTGCACTTGTAGGCATTTTTGCGTGTTCTTGAGTTTTGGATT TGACGAGGATGGCTAATTCGTCGTTAACGAGTTGTCGTACTTTTTTAACG TCGAACGGGTTTTTACTGTCCATGTTGTACGTATTCTGGTGGTAGCTCAT TGGTGAATAATCGTTGCCTAAATCTCCAGTTCCCGATAAAATTGATTTAC CATGGTTAgaagataaatttgaaaaacttctttGTTTCATaatatgatga tgatgatcttTCTCTTCAGTTATGATGGCTGGATGATGGTCATTTTTAAC ACCACCAAAGTTGAATGGTGGTCTATCTTTGGCTTTTGTTGGTAAATCGT AGTGTACAACTTCACTGATTCCTTTACGCGCTTGTTTATCCGTCATTTTT TGTTGCTTGTTAAATTCAGTATCGAAAAAACTGTTCGACCTTCTCTTGAC AAGCTCCTCTTCCTGTCTGATTgactgaaaactttttgtcatAGAACTCA TTGTTATTGTTACATTCGCTATGAAAACTTGTTATGCA

Coding sequence (CDS) from alignment at scaffold_71:103445..104482

>TCONS_00072231 ID=TCONS_00072231|Name=TCONS_00072231|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_71:103445..104482 (Clytia hemisphaerica)
CTATATGACGATATCGATCAAAACCCANTGATGGTAATTTTCCGATACCG
TAATATTCACTATATGACGATATCGATCAAAACCCATGCTTTTCACCTTC
AGTTTAATACTCTCAATTGTTTTTAAACATTCTGCACTTGTAGGCATTTT
TGCGTGTTCTTGAGTTTTGGATTTGACGAGGATGGCTAATTCGTCGTTAA
CGAGTTGTCGTACTTTTTTAACGTCGAACGGGTTTTTACTGTCCATGTTG
TACGTATTCTGGTGGTAGCTCATTGGTGAATAATCGTTGCCTAAATCTCC
AGTTCCCGATAAAATTGATTTACCATGGTTAgaagataaatttgaaaaac
ttctttGTTTCATaatatgatgatgatgatcttTCTCTTCAGTTATGATG
GCTGGATGATGGTCATTTTTAACACCACCAAAGTTGAATGGTGGTCTATC
TTTGGCTTTTGTTGGTAAATCGTAGTGTACAACTTCACTGATTCCTTTAC
GCGCTTGTTTATCCGTCATTTTTTGTTGCTTGTTAAATTCAGTATCGAAA
AAACTGTTCGACCTTCTCTTGACAAGCTCCTCTTCCTGTCTGATTgactg
aaaactttttgtcatAGAACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044843XLOC_044843Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072231-proteinTCONS_00072231-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072231-exon-scaffold_71-1491911889:103445..104482TCONS_00072231-exon-scaffold_71-1491911889:103445..104482Clytia hemisphaericaexon
TCONS_00072231-exon-scaffold_71-1510915933:103445..104482TCONS_00072231-exon-scaffold_71-1510915933:103445..104482Clytia hemisphaericaexon
TCONS_00072231-exon-scaffold_71-1575043694:103445..104482TCONS_00072231-exon-scaffold_71-1575043694:103445..104482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:103445..104482 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0428791 0.167039 0.0970806 0.14357 0 0 0 0.0519181 0.47045 0.223523 0.17388 0.631516 1.90997 1.36966 1.87365 3.65537 4.75664 4.06867 1.2738 0.714486 6.47641 5.1912 4.07271 3.84496 2.59265 3.61545 0.238666 0.255112 0.287093 0.245358
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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