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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072231 ID=TCONS_00072231|Name=TCONS_00072231|organism=Clytia hemisphaerica|type=transcript|length=1038bp
TGCATAACAAGTTTTCATAGCGAATGTAACAATAACAATGAGTTCTatga
caaaaagttttcagtcAATCAGACAGGAAGAGGAGCTTGTCAAGAGAAGG
TCGAACAGTTTTTTCGATACTGAATTTAACAAGCAACAAAAAATGACGGA
TAAACAAGCGCGTAAAGGAATCAGTGAAGTTGTACACTACGATTTACCAA
CAAAAGCCAAAGATAGACCACCATTCAACTTTGGTGGTGTTAAAAATGAC
CATCATCCAGCCATCATAACTGAAGAGAaagatcatcatcatcatattAT
GAAACaaagaagtttttcaaatttatcttcTAACCATGGTAAATCAATTT
TATCGGGAACTGGAGATTTAGGCAACGATTATTCACCAATGAGCTACCAC
CAGAATACGTACAACATGGACAGTAAAAACCCGTTCGACGTTAAAAAAGT
ACGACAACTCGTTAACGACGAATTAGCCATCCTCGTCAAATCCAAAACTC
AAGAACACGCAAAAATGCCTACAAGTGCAGAATGTTTAAAAACAATTGAG
AGTATTAAACTGAAGGTGAAAAGCATGGGTTTTGATCGATATCGTCATAT
AGTGAATATTACGGTATCGGAAAATTACCATCANTGGGTTTTGATCGATA
TCGTCATATAGTGAATATTACGGTATCGGAGAATTACCATCAGACGATGA
GAATAGCAAGTCGTTTCTTTTGGGATGTTGACAGGGATAAGTATATATCA
CAGACCATTACTAATAAACATTTTCATTTGGTTTGTGTTGTTTATGCTGT
CTATTTCGAATGACTTTACTAAACGAACTTTTGTAAATAATGTGTAAATT
AAAGTTTATCTTTACATGAGTGtacccgtttcatatcagacccATATTTC
AAattaggacagtgtctgcctattgttatattatgctgatataagcaaac
aaatgttttacttttcctctttctaactaatcttgctccacatccgtgtc
aattctatgtgaaaaagcttgtgaattaaaattgatga Run BLAST on NCBI protein sequence of TCONS_00072231-protein >TCONS_00072231-protein ID=TCONS_00072231-protein|Name=TCONS_00072231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MSSMTKSFQSIRQEEELVKRRSNSFFDTEFNKQQKMTDKQARKGISEVVH
YDLPTKAKDRPPFNFGGVKNDHHPAIITEEKDHHHHIMKQRSFSNLSSNH
GKSILSGTGDLGNDYSPMSYHQNTYNMDSKNPFDVKKVRQLVNDELAILV
KSKTQEHAKMPTSAECLKTIESIKLKVKSMGFDRYRHIVNITVSENYHXW
VLIDIVI Run BLAST on NCBI transcript from alignment at scaffold_71:103445..104482 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072231 ID=TCONS_00072231|Name=TCONS_00072231|organism=Clytia hemisphaerica|type=transcript|length=1038bp|location=Sequence derived from alignment at scaffold_71:103445..104482 (Clytia hemisphaerica)
tcatcaattttaattcacaagctttttcacatagaattgacacggatgtg
gagcaagattagttagaaagaggaaaagtaaaacatttgtttgcttatat
cagcataatataacaataggcagacactgtcctaatTTGAAATATgggtc
tgatatgaaacgggtaCACTCATGTAAAGATAAACTTTAATTTACACATT
ATTTACAAAAGTTCGTTTAGTAAAGTCATTCGAAATAGACAGCATAAACA
ACACAAACCAAATGAAAATGTTTATTAGTAATGGTCTGTGATATATACTT
ATCCCTGTCAACATCCCAAAAGAAACGACTTGCTATTCTCATCGTCTGAT
GGTAATTCTCCGATACCGTAATATTCACTATATGACGATATCGATCAAAA
CCCANTGATGGTAATTTTCCGATACCGTAATATTCACTATATGACGATAT
CGATCAAAACCCATGCTTTTCACCTTCAGTTTAATACTCTCAATTGTTTT
TAAACATTCTGCACTTGTAGGCATTTTTGCGTGTTCTTGAGTTTTGGATT
TGACGAGGATGGCTAATTCGTCGTTAACGAGTTGTCGTACTTTTTTAACG
TCGAACGGGTTTTTACTGTCCATGTTGTACGTATTCTGGTGGTAGCTCAT
TGGTGAATAATCGTTGCCTAAATCTCCAGTTCCCGATAAAATTGATTTAC
CATGGTTAgaagataaatttgaaaaacttctttGTTTCATaatatgatga
tgatgatcttTCTCTTCAGTTATGATGGCTGGATGATGGTCATTTTTAAC
ACCACCAAAGTTGAATGGTGGTCTATCTTTGGCTTTTGTTGGTAAATCGT
AGTGTACAACTTCACTGATTCCTTTACGCGCTTGTTTATCCGTCATTTTT
TGTTGCTTGTTAAATTCAGTATCGAAAAAACTGTTCGACCTTCTCTTGAC
AAGCTCCTCTTCCTGTCTGATTgactgaaaactttttgtcatAGAACTCA
TTGTTATTGTTACATTCGCTATGAAAACTTGTTATGCA Coding sequence (CDS) from alignment at scaffold_71:103445..104482 >TCONS_00072231 ID=TCONS_00072231|Name=TCONS_00072231|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_71:103445..104482 (Clytia hemisphaerica)
CTATATGACGATATCGATCAAAACCCANTGATGGTAATTTTCCGATACCG
TAATATTCACTATATGACGATATCGATCAAAACCCATGCTTTTCACCTTC
AGTTTAATACTCTCAATTGTTTTTAAACATTCTGCACTTGTAGGCATTTT
TGCGTGTTCTTGAGTTTTGGATTTGACGAGGATGGCTAATTCGTCGTTAA
CGAGTTGTCGTACTTTTTTAACGTCGAACGGGTTTTTACTGTCCATGTTG
TACGTATTCTGGTGGTAGCTCATTGGTGAATAATCGTTGCCTAAATCTCC
AGTTCCCGATAAAATTGATTTACCATGGTTAgaagataaatttgaaaaac
ttctttGTTTCATaatatgatgatgatgatcttTCTCTTCAGTTATGATG
GCTGGATGATGGTCATTTTTAACACCACCAAAGTTGAATGGTGGTCTATC
TTTGGCTTTTGTTGGTAAATCGTAGTGTACAACTTCACTGATTCCTTTAC
GCGCTTGTTTATCCGTCATTTTTTGTTGCTTGTTAAATTCAGTATCGAAA
AAACTGTTCGACCTTCTCTTGACAAGCTCCTCTTCCTGTCTGATTgactg
aaaactttttgtcatAGAACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072231-exon-scaffold_71-1491911889:103445..104482 | TCONS_00072231-exon-scaffold_71-1491911889:103445..104482 | Clytia hemisphaerica | exon |
| TCONS_00072231-exon-scaffold_71-1510915933:103445..104482 | TCONS_00072231-exon-scaffold_71-1510915933:103445..104482 | Clytia hemisphaerica | exon |
| TCONS_00072231-exon-scaffold_71-1575043694:103445..104482 | TCONS_00072231-exon-scaffold_71-1575043694:103445..104482 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:103445..104482 . |
Blast
The following BLAST results are available for this feature:
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