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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072230 ID=TCONS_00072230|Name=TCONS_00072230|organism=Clytia hemisphaerica|type=transcript|length=1068bp
GCAAGTTTGAGTGAAGAGTCAAAAAAGTACTCATTATTGGAGACTTATCT
CAGGCCCATATAACTCAGAAGAAGAAATTACTTAAGAAGTATGTAGAAAC
AAACTTGGATGATAAACTTAAGAAGAAAATGATGTATAATGAAGTGAAAA
TGCCAAAATTACATGCATGTCTCTCAAGCGAACAGCTGCAGTCTTTCGTT
TGAGAAAAGATTATCGCAACCTCTCCACAGATGAGTATGTTGAAAACTTG
AGCTCTTAGACAACTATTGGAGATCTTAGAAATGTTGTACATGGAATTGT
GGGTAAGAGGGATGATAGTAAATCAGTAACACTGGAACTCAACTCTCCTT
TACAAGGTCAAGGAAATGAAGCAATACAGTCAAAAAACTTGTGATATTGG
GGAGCAGTGCCAGTAAAGTCTAAAGACTTGTGATATTGGGGAGCATGTTA
TTGCCTTTTGGCATGAGGGTATTggtaatgagacaaaatgacatttAGGA
GTGGTAGAAAAGGTTCAACCAGTAACAGTTTCATACATGACACGAACTGA
TAAAAGCAGACACAACTGGACATTccctgaaaaagttgaaataattaagA
CATCTGTCGACCAAGTAATTGCGACTAAAATCAATGCCCAATATCTTGGA
ACTGTGATGATaagattatgtcaaaaatatttcaatttattagGTTTAAA
ATCTAATAGCAAAGGAAGTACCCTTCAAACtctgtaaaatatcttttgga
taGTATAAGGTTTGAGAGGTTGACGGACTTTCTAACTTCGACTGTTCTCG
ATTAGAGCAACGAAATTTCTTATTCGTCAAAGAGCTCCTTTATCCTTGGT
TttatagtttttaaatttttaaaatgatccTGTAGATTCAAAATGTATGA
TATCAGTAGAAAATAAGCACTTATTTCATGTAGGtcttccaaaaaatata
atgaaagtatgaattaatttcaaaagtatgaattttttaAGACATTACAC
GATTACACTAAAAAAGCCTCTTTCAAGAGCAATGTAATGTACTCTACAAC
CTTATCACTTCATTTTTG Run BLAST on NCBI transcript from alignment at scaffold_71:17769..18836 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072230 ID=TCONS_00072230|Name=TCONS_00072230|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at scaffold_71:17769..18836 (Clytia hemisphaerica)
CAAAAATGAAGTGATAAGGTTGTAGAGTACATTACATTGCTCTTGAAAGA
GGCTTTTTTAGTGTAATCGTGTAATGTCTtaaaaaattcatacttttgaa
attaattcatactttcattatattttttggaagaCCTACATGAAATAAGT
GCTTATTTTCTACTGATATCATACATTTTGAATCTACAggatcattttaa
aaatttaaaaactataaAACCAAGGATAAAGGAGCTCTTTGACGAATAAG
AAATTTCGTTGCTCTAATCGAGAACAGTCGAAGTTAGAAAGTCCGTCAAC
CTCTCAAACCTTATACtatccaaaagatattttacagaGTTTGAAGGGTA
CTTCCTTTGCTATTAGATTTTAAACctaataaattgaaatatttttgaca
taatcttATCATCACAGTTCCAAGATATTGGGCATTGATTTTAGTCGCAA
TTACTTGGTCGACAGATGTcttaattatttcaactttttcagggAATGTC
CAGTTGTGTCTGCTTTTATCAGTTCGTGTCATGTATGAAACTGTTACTGG
TTGAACCTTTTCTACCACTCCTaaatgtcattttgtctcattaccAATAC
CCTCATGCCAAAAGGCAATAACATGCTCCCCAATATCACAAGTCTTTAGA
CTTTACTGGCACTGCTCCCCAATATCACAAGTTTTTTGACTGTATTGCTT
CATTTCCTTGACCTTGTAAAGGAGAGTTGAGTTCCAGTGTTACTGATTTA
CTATCATCCCTCTTACCCACAATTCCATGTACAACATTTCTAAGATCTCC
AATAGTTGTCTAAGAGCTCAAGTTTTCAACATACTCATCTGTGGAGAGGT
TGCGATAATCTTTTCTCAAACGAAAGACTGCAGCTGTTCGCTTGAGAGAC
ATGCATGTAATTTTGGCATTTTCACTTCATTATACATCATTTTCTTCTTA
AGTTTATCATCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTCTT
CTGAGTTATATGGGCCTGAGATAAGTCTCCAATAATGAGTACTTTTTTGA
CTCTTCACTCAAACTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072230-exon-scaffold_71-1491911889:17769..18836 | TCONS_00072230-exon-scaffold_71-1491911889:17769..18836 | Clytia hemisphaerica | exon |
| TCONS_00072230-exon-scaffold_71-1510915933:17769..18836 | TCONS_00072230-exon-scaffold_71-1510915933:17769..18836 | Clytia hemisphaerica | exon |
| TCONS_00072230-exon-scaffold_71-1575043694:17769..18836 | TCONS_00072230-exon-scaffold_71-1575043694:17769..18836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:17769..18836 . |
Blast
The following BLAST results are available for this feature:
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