TCONS_00072230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072230
Unique NameTCONS_00072230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1068

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072230 ID=TCONS_00072230|Name=TCONS_00072230|organism=Clytia hemisphaerica|type=transcript|length=1068bp
GCAAGTTTGAGTGAAGAGTCAAAAAAGTACTCATTATTGGAGACTTATCT
CAGGCCCATATAACTCAGAAGAAGAAATTACTTAAGAAGTATGTAGAAAC
AAACTTGGATGATAAACTTAAGAAGAAAATGATGTATAATGAAGTGAAAA
TGCCAAAATTACATGCATGTCTCTCAAGCGAACAGCTGCAGTCTTTCGTT
TGAGAAAAGATTATCGCAACCTCTCCACAGATGAGTATGTTGAAAACTTG
AGCTCTTAGACAACTATTGGAGATCTTAGAAATGTTGTACATGGAATTGT
GGGTAAGAGGGATGATAGTAAATCAGTAACACTGGAACTCAACTCTCCTT
TACAAGGTCAAGGAAATGAAGCAATACAGTCAAAAAACTTGTGATATTGG
GGAGCAGTGCCAGTAAAGTCTAAAGACTTGTGATATTGGGGAGCATGTTA
TTGCCTTTTGGCATGAGGGTATTggtaatgagacaaaatgacatttAGGA
GTGGTAGAAAAGGTTCAACCAGTAACAGTTTCATACATGACACGAACTGA
TAAAAGCAGACACAACTGGACATTccctgaaaaagttgaaataattaagA
CATCTGTCGACCAAGTAATTGCGACTAAAATCAATGCCCAATATCTTGGA
ACTGTGATGATaagattatgtcaaaaatatttcaatttattagGTTTAAA
ATCTAATAGCAAAGGAAGTACCCTTCAAACtctgtaaaatatcttttgga
taGTATAAGGTTTGAGAGGTTGACGGACTTTCTAACTTCGACTGTTCTCG
ATTAGAGCAACGAAATTTCTTATTCGTCAAAGAGCTCCTTTATCCTTGGT
TttatagtttttaaatttttaaaatgatccTGTAGATTCAAAATGTATGA
TATCAGTAGAAAATAAGCACTTATTTCATGTAGGtcttccaaaaaatata
atgaaagtatgaattaatttcaaaagtatgaattttttaAGACATTACAC
GATTACACTAAAAAAGCCTCTTTCAAGAGCAATGTAATGTACTCTACAAC
CTTATCACTTCATTTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_71:17769..18836

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072230 ID=TCONS_00072230|Name=TCONS_00072230|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at scaffold_71:17769..18836 (Clytia hemisphaerica)
CAAAAATGAAGTGATAAGGTTGTAGAGTACATTACATTGCTCTTGAAAGA GGCTTTTTTAGTGTAATCGTGTAATGTCTtaaaaaattcatacttttgaa attaattcatactttcattatattttttggaagaCCTACATGAAATAAGT GCTTATTTTCTACTGATATCATACATTTTGAATCTACAggatcattttaa aaatttaaaaactataaAACCAAGGATAAAGGAGCTCTTTGACGAATAAG AAATTTCGTTGCTCTAATCGAGAACAGTCGAAGTTAGAAAGTCCGTCAAC CTCTCAAACCTTATACtatccaaaagatattttacagaGTTTGAAGGGTA CTTCCTTTGCTATTAGATTTTAAACctaataaattgaaatatttttgaca taatcttATCATCACAGTTCCAAGATATTGGGCATTGATTTTAGTCGCAA TTACTTGGTCGACAGATGTcttaattatttcaactttttcagggAATGTC CAGTTGTGTCTGCTTTTATCAGTTCGTGTCATGTATGAAACTGTTACTGG TTGAACCTTTTCTACCACTCCTaaatgtcattttgtctcattaccAATAC CCTCATGCCAAAAGGCAATAACATGCTCCCCAATATCACAAGTCTTTAGA CTTTACTGGCACTGCTCCCCAATATCACAAGTTTTTTGACTGTATTGCTT CATTTCCTTGACCTTGTAAAGGAGAGTTGAGTTCCAGTGTTACTGATTTA CTATCATCCCTCTTACCCACAATTCCATGTACAACATTTCTAAGATCTCC AATAGTTGTCTAAGAGCTCAAGTTTTCAACATACTCATCTGTGGAGAGGT TGCGATAATCTTTTCTCAAACGAAAGACTGCAGCTGTTCGCTTGAGAGAC ATGCATGTAATTTTGGCATTTTCACTTCATTATACATCATTTTCTTCTTA AGTTTATCATCCAAGTTTGTTTCTACATACTTCTTAAGTAATTTCTTCTT CTGAGTTATATGGGCCTGAGATAAGTCTCCAATAATGAGTACTTTTTTGA CTCTTCACTCAAACTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044842XLOC_044842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072230-exon-scaffold_71-1491911889:17769..18836TCONS_00072230-exon-scaffold_71-1491911889:17769..18836Clytia hemisphaericaexon
TCONS_00072230-exon-scaffold_71-1510915933:17769..18836TCONS_00072230-exon-scaffold_71-1510915933:17769..18836Clytia hemisphaericaexon
TCONS_00072230-exon-scaffold_71-1575043694:17769..18836TCONS_00072230-exon-scaffold_71-1575043694:17769..18836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:17769..18836 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32598 1.01605 2.02752 1.83914 2.14741 2.32274 2.78262 3.62243 3.70262 2.08939 2.13699 1.93989 1.1593 1.21295 0.695314 0.691985 0.671491 0.585921 1.60855 0.610362 1.24331 1.25108 0.763273 1.23892 1.03828 1.29163 0.903988 1.23149 2.4003 1.61102
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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