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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072221 ID=TCONS_00072221|Name=TCONS_00072221|organism=Clytia hemisphaerica|type=transcript|length=4942bpRun BLAST on NCBI protein sequence of TCONS_00072221-protein >TCONS_00072221-protein ID=TCONS_00072221-protein|Name=TCONS_00072221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=910bp MNASTSTLKVTVNGKKYLITGIQKETSCKGLLCAIAKVTSLEDSSIQSYSRun BLAST on NCBI transcript from alignment at scaffold_71:1204528..1330664- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072221 ID=TCONS_00072221|Name=TCONS_00072221|organism=Clytia hemisphaerica|type=transcript|length=126137bp|location=Sequence derived from alignment at scaffold_71:1204528..1330664- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:1204528..1330664- >TCONS_00072221 ID=TCONS_00072221|Name=TCONS_00072221|organism=Clytia hemisphaerica|type=CDS|length=2733bp|location=Sequence derived from alignment at scaffold_71:1204528..1330664- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072221 vs. Swiss-Prot (Human)
Match: SUCB2 (Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2 PE=1 SV=2) HSP 1 Score: 264.618 bits (675), Expect = 7.970e-77 Identity = 142/255 (55.69%), Postives = 178/255 (69.80%), Query Frame = 2
Query: 134 MASKIAC-CKNLIQNLNKFTKFCSHASIGLH-QQQRNLNLQEYASKKLMSEYGVNVQKFGVADTPSEASDIGKNLMAGTATELVVKAQILAGGRGKGVFDNGFKGGVHLTKDANAVEDLATNMLGNKLTTKQTPPGGVLVQKLMVCEALDIERETYLAILMDREAKGPVIVASPEGGMDIEEVAEKSPEKILTEKVDIFTGVTTEQAEKISAFIGLDGDERVQGTEQIKKLYDLFLGVDATQVEINPFGVTDKGE 892
MAS +A L++ L +F + S + +R LNLQEY SKKLMS+ GV VQ+F VADT +EA + K L A E+V+KAQILAGGRGKGVF++G KGGVHLTKD N V LA M+G L TKQTP GV V K+MV EALDI RETYLAILMDR GPV+V SP+GG+DIEEVA +PE I E++DIF G+ QA++++ +G G + Q +QI KLY+LFL +DATQVE+NPFG T +G+
Sbjct: 1 MASPVAAQAGKLLRALALRPRFLAAGSQAVQLTSRRWLNLQEYQSKKLMSDNGVRVQRFFVADTANEALEAAKRL---NAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQ 252 HSP 2 Score: 191.815 bits (486), Expect = 1.070e-51 Identity = 94/140 (67.14%), Postives = 111/140 (79.29%), Query Frame = 3
Query: 1506 ETDPRETEAAKHDLQYIALDGNIACMVNGAGLAMATMDIVKLHGGWPANFLDLGGGVTEDMVYHGFNLLAADKNVKAILVNIFGGIVNCATIAKGITNAYRGMNLNLPIVVRLEGTNVDEAKRILSESNMPIETADNLDE 1925
E +P E EAAK+DL+YI LDGNIAC VNGAGLAMAT DI+ L+GG PANFLDLGGGV E VY F LL AD V+AILVNIFGGIVNCA IA GIT A R + L +P+VVRLEGTNV EA++IL+ S +PI +A +L++
Sbjct: 281 ENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVQEAQKILNNSGLPITSAIDLED 420 The following BLAST results are available for this feature:
BLAST of TCONS_00072221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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