|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072214 ID=TCONS_00072214|Name=TCONS_00072214|organism=Clytia hemisphaerica|type=transcript|length=2547bpRun BLAST on NCBI protein sequence of TCONS_00072214-protein >TCONS_00072214-protein ID=TCONS_00072214-protein|Name=TCONS_00072214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=747bp MGAENSSLKKFQHGEVFESESDYLTIASAQDQTGDNKYTVFQYLKNSPGIRun BLAST on NCBI transcript from alignment at scaffold_71:1141237..1155180- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072214 ID=TCONS_00072214|Name=TCONS_00072214|organism=Clytia hemisphaerica|type=transcript|length=13944bp|location=Sequence derived from alignment at scaffold_71:1141237..1155180- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:1141237..1155180- >TCONS_00072214 ID=TCONS_00072214|Name=TCONS_00072214|organism=Clytia hemisphaerica|type=CDS|length=38148bp|location=Sequence derived from alignment at scaffold_71:1141237..1155180- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072214 vs. Swiss-Prot (Human)
Match: PACE1 (Protein-associating with the carboxyl-terminal domain of ezrin OS=Homo sapiens GN=SCYL3 PE=1 SV=3) HSP 1 Score: 193.741 bits (491), Expect = 8.062e-52 Identity = 135/439 (30.75%), Postives = 226/439 (51.48%), Query Frame = 1
Query: 19 MGAENSSLKKFQHGEVFESESDYLTIASAQDQTGDNKY-TVFQYLK-NSPGIEPAKKNIQVSKGIRHPYILKFVNTFEDSKHMTLVTEDAAPLSVAIEKQVKEEIMIGLYNVLQALIFLHQKIGLCHNNINVSTVYVTKRGDWKLALFEHSSKI----------VQTARD--------------------SYSQDAIGYGELALSILEYLNDDQKPTI--KFMERLQQSYTEVNKSNLGSLKTLVNDPVFKFPYMELVQSLETITLKQNEEKLKFFRSLIKNIHGSPSLSVCRRCIPTLFTSTVLSDPTA-ECILDSLFASGNAETLSQSILP-LIDKEYFHEYCIPCILKLFELRDKAVRLILLQRLPLYIDCIEKNILKEQILPEVLAGLQDDDDLMVSATLRALSYFVLMIGGQAVVGSQGSKLFHNRLPDFSRVT 1227
MG+ENS+LK + E + L + A Q D K+ +VF Y + N + A K++ K +RHP +L+F++ ++ + LVTE PL VA+E E+ G+Y++L ALIFLH + L HNN+ +S+V+V++ G WKL E K+ +Q+ RD +++DA +G L S+L LN+ + F + L + +L TL++ F+ ++E+V L+++TLK EEK +FF+ L+ + + R +P L V ++P A + L L G + +Q P L+ F IP +L+LFE+ ++ VR++LL + Y++ + LK+ ILP+VL GL+D D +V+ TL +L+ V ++G + VVG + +K+F P F++ T
Sbjct: 1 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQ--DGKFASVFVYKRENEDKVNKAAKHL---KTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLL--GPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNT 432 The following BLAST results are available for this feature:
BLAST of TCONS_00072214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.