TCONS_00072213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072213
Unique NameTCONS_00072213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072213 ID=TCONS_00072213|Name=TCONS_00072213|organism=Clytia hemisphaerica|type=transcript|length=2578bp
atataatatataatggGAGCAGAAAATAGCAGTTTAAAGAAATTCCAACA
TGGAGAAGTGTTTGAATCAGAATCAGATTACCTCACTATTGCTTCAGCCC
AGGATCAAACAGGCGACAACAAGTACACAGTTTTCCAATATTTAAAGAAT
TCACCAGGAATTGAACCTGCTAAGAAAAACATTCAGGTATCAAAAGGAAT
ACGGCATCCTTACATACTTAAGTTTGTCAACACTTTTGAAGATTCAAAAC
ACATGACTTTGGTGACTGAAGATGCAGCNaccgaaagtaaatggtagaca
aagtaatgagccaaggcaaaacgagattagcgtaccactatgaaagaaac
cgcctccggcggtcgattattgattgtcaaaatatattttatgttttttt
tgttcataGATTGGGCTTTGTCACAATAACATCAATGTTTCCACTGTGTA
TGTCACCAAGAGAGGGGATTGGAAACTTGCCTTGTTTGAACATTCTTCCA
AGATTGTGCAAACTGCAAGAGATAGTTATAGTCAAGATGCTATTGGCTAT
GGCGAATTAGCACTGAGTATCCTGGAATACTTGAATGATGATCAAAAACC
TACCATCAAATTCATGGAAAGGTTACAGCAGAGCTACACTGAAGTCAATA
AAAGCaatCTAGGATCACTCAAAACACTAGTAAATGATCCTGTATTCAAA
TTTCCTTATATGGAGTTAGTGCAAAGTCTAGAAACAATCACACTCAAACA
AAATGAAGAGAAACTCAAATTCTTCCGcTCGCTGATAAAGAATATACATG
GTTCCCCAAGCTTATCAGTGTGCCGAAGGTGTATCCCAACTTTATTCACA
AGCACAGTTTTATCAGATCCAACTGCTGAATGTATACTTGATAGTCTCTT
TGCATCAGGCAATGctgAAACACTTTCACAGTCTATCCTACCGTTAATcg
ataaagaatattttcatgAATATTGTATACCATGCATATTAAAACTATTC
GAACTTCGTGATAAAGCAGTACGTTTGATTTTGCTGCAAAGACTTCCCCT
TTATATcgattgcattgaaaaaaatatcctcAAGGAGCAAATACTTCCAG
AGGTGTTAGCAGGCTTACAAGATGACGATGATTTGATGGTGTCTGCTACG
TTGCGCGCTCTTTCATACTTTGTCTTAATGATCGGTGGACAAGCCGTCGT
TGGAAGTCAGGGAAGCAAACTCTTCCACAACAGACTACCTGATttttcaa
gagtcACCATGGATGAagGTTTTTCAAGGAGCCCTCGCAAAGAAGCGAAG
CTGAAAACCGATGAAGAGACTGACGTTTGCGAAGAACGAAGATTGAAACG
CACTGAACGTGAAAAACAAAGAGAAGAGCAGAGGAAGCGGAGAGAAGAAC
GAAGGAAAGAACGAGATTtgaataaagcgaaaaaaatcgaaaaacaaacA
TCCACAGGAGAATCACATTCTGAGGATAATGAAACTATTCAACAACCAAC
ACTCATCGAAAACATAGTAACCAATcaagagaaagaagaaaaatcaccGT
CCAAAGAAGGTTCCGAAACTTCAGAAGCCGATTGGGAAGGATTTATCGCT
CAAGATGACACTGAATCGACCGGGGAAGGTGATAAAGACGAATGGGAATG
GGACGAAAAGACTGAAGAACTTCCCAAAAACACGCTTCGAAAACAATCGC
TCAAAAATACCGACGATGCATTCAATGGATTCAAAAACGACGACGAAGAC
GACTGGCAAACGGATTGGAACGAGCCCTCAGTTAACCATAGTAATACAAA
TAGAGATGTTGATAATAGTTTCCATGACAACGACGATGACGACCAAGACG
ACTGGCAAACGGATTGGAATGAgaaaaatgtcgaaaatagTGACTATATG
ACAAAAGTGACAGAAATTAAGAACAAAAGTAATAAAACAtctgaaaaaaa
ggaaaaagagacTAAAACTATTGaatcaaaaacaaaaggaaTGTCCTTGT
CTtcgaaaacaaaaacgaaagtaacTCCCAAAGACAATAAAGATACCAAC
ACAACTACGAAAAAGACAGACTTGGGAGACGAATTTAGCATCAAGATCAA
ACAGGAGTTCAGTAGCGAGCCGGATTATTTTGCAGACATGATACCAGAct
ttaatgaaaagaaaacagttCTCATCGAATCAAAGACCAATATTACGAAT
TCGAAATTCCAAGCAGCTCCCGACGATTCGGAGGTGATGGGCGGTTGGGG
CGACGACGATGGTGTTGAAGATGGGTGGACCGATGATTTCTAAAGTTAAC
TGTCTTATTTTCTTAGTATCTTCATGAATTTATATTATCTTATTATCTAT
AGTAGTAGACTGACtctaatagcgaggttaagcaagaagctatctattac
gtacggaatctattacgtgagtttttagGCTGGATCCGAGGCGTTTTAGC
CTGATTCCTAAAGCTTCACGGCATAGAAAAAAAAGTGGTTAAGCAAAAAG
GCGATCTATGacgtatgacgtaatgtttatttttccgtATCTCACTTTTG
GCCCCaacttataaaattttatttttct
Run BLAST on NCBI

transcript from alignment at scaffold_71:1141237..1155174-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072213 ID=TCONS_00072213|Name=TCONS_00072213|organism=Clytia hemisphaerica|type=transcript|length=13938bp|location=Sequence derived from alignment at scaffold_71:1141237..1155174- (Clytia hemisphaerica)
ATATAATATATAATGGGAGCAGAAAATAGCAGTTTAAAGAAATTCCAACA
TGGAGAAGTGTTTGAATCAGAATCAGATTACCTCACTATTGCTTCAGCCC
AGGATCAAACAGGCGACAACAAGTACACAGTTTTCCAATATTTAAAGAAT
TCACCAGGAATTGAACCTGCTAAGAAAAACATTCAGGTAAGATCTGATCA
ATACTTTTGTTGTAAGCTTTTATCTTAATAAGTTGTATTGTTCTAAAATC
GCTTTTATTGAATTTACTGAATGAAACTAAAGGAAAGGGTCCGAGATGTG
ATAATTTTATCATAATACAGTATCGTAATCAGATCAATATCAATTTGTGC
CAAAATAAACATTCATGTCCAAAAGTAAGATAAACGCATAGATTAAAAAG
TGCATACTGCAAAACTTTGTCTCAAAAATTTATATCATTATCAAAAAATT
TTCAAATAGACAAAAGACTTTTATGATACTTAACAATTTATAACACTCCT
TCAATTATTTTACAGGTATCAAAAGGAATACGGCATCCTTACATACTTAA
GTTTGTCAACACTTTTGAAGATTCAAAACACATGACTTTGGTGACTGAAG
ATGCAGCTCCTTTGAGTGTTGCCATTGAAAAGCAAGTTAAAGAAGAAATC
ATGATTGGCCTTTATAATGTCCTGCAGGCTTTGATTTTCTTGCACCAAAA
GGTATTAGCAGTTATCTTTTTTCCTTCTCTGATACGTACCTTACTTTTTT
AAATTGCTGAGTTTCCAATAGTTTTGTTCAACACAGCTCCAATCAATCCA
ATTGGTTAAATCNTCTAACTCAAACTGGGCATTACAGGAGGGCTTCGCCC
TCCTATATAGCCCATGTCGTATATATACGACATCGGCACTTAAAGGGTTA
ATACATAGTGGTGTGTTTTTTATACAAAACTTTCAGATAAATATAATATA
TAATGGGAGCAGAAAATAGCAGCTTAAAGAAATTCCAACATGGAGAAGTG
TTTGAATCAGAATCAGATTACCTCACTATTGCTTCAGCCCAGGATCAAAC
AGGCGACAACAAGTACACAGTTTTCCAATATTTAAAGAATTCACCAGGAA
TTGAACCTGCTAAGAAAAACATTCAGGTAAGATCTGATCAATACTTTTGT
TGTAAGCTTTTATCTTAATAAGTTGTATTGTTCTAAAATCGCTTTTATTG
AATTTACTGAATGAAACTAAAGGAAAGGGTCCGAGATGTGATAATTTTAT
CATAATACAGTATCGTAATCAGATCAATATCAATTTGTGCCAAAATAAAC
ATTCATGTCCAAAAGTAAGATAAACGCATAGATTAAAAAGTGCATACTGC
AAAACTTTGTCTCAAAAATTTATATCATTATCAAAAAATTTTCAAATAGA
CAAAAGACTTTTATGATACTTAACAATTTATAACACTCCTTCAATTATTT
TACAGGTATCAAAAGGAATACGGCATCCTTACATACTTAAGTTTGTCAAC
ACTTTTGAAGATTCAAAACACATGACTTTGGTGACTGAAGATGCAGCNAC
CGAAAGTAAATGGTAGACAAAGTAATGAGCCAAGGCAAAACGAGATTAGC
GTACCACTATGAAAGAAACCGCCTCCGGCGGTCGATTATTGATTGTCAAA
ATATATTTTATGTTTTTTTTGTTCATAGATTGGGCTTTGTCACAATAACA
TCAATGTTTCCACTGTGTATGTCACCAAGAGAGGGGATTGGAAACTTGCC
TTGTTTGAACATTCTTCCAAGGTATGTACATTGTCTCATACCTATGTTAA
TTCCTCATCTTTTTGTGTGCTGAATATAAACCATCAGATATGTTTTTTTT
GTTTACCCACCTAAAGTTATGATCACGAGAAACCAAAATCAAATAGAATC
ACAAAGTGCTCTAGAAAATTATTTCTGCAATTTTGGTAGGCATATTCTAG
CTTACTTTGACCTTTACAACCTTTTTTAAGCTATTTGAGCTTGCTTAGAG
CAAAACTTTTCGCTTTCAGTGCTTAAGTTACAAGAAAAATTTGCCTCCCG
AACCGAATTTTTTTGAGAATATCCAGAGGGTGCAAATTTTTTTTTTGAAT
ATTTGAAAATATCCTCCNCTCCCGAACCGAAATTTTTTGAGAATATCAAG
GGGGTGCAAATTTTTTTTTTAATATTTGAAAATATCCTCCACCACACCCT
AGTAGATACTTTCTGACCACTTCCTTAGATTGTGCAAACTGCAAGAGATA
GTTATAGTCAAGATGCTATTGGCTATGGCGAATTAGCACTGAGTATCCTG
GAATACTTGAATGATGATCGTAAGTCTTAAACATCCTTGTCTTTCAACCC
AATCTACGGGCTATCCAATGAGGAAAATCTCTTAAATACATTAGAGTGTA
TCTGATAAAAAAATATTCGATTCAAAATAGTTTTCTTTCAATAAAAGTTT
CGTTTATTTTCAATTTTACTTGGCTCTGGTATCTTGTTTGTTTATCATCG
TTCACTATTCAGTTTGATTTCATTGCAATAATTTGAGTGTAAATGATAAA
ATAAAACATAGGAAGGTTTTGGTTCGTAAGTCGTAGTACCGTTTCTGATT
TAGTGCAACAACTCCCACATGGTAAAAACTGTTTATTAAATTAAGTAATA
AATAATAATACCATTGATAAATATATTTGAAGACATTGTTTTTATTATTA
TTCTTTTTGTCACCCAGCTCATCGATTCACCAAGCCTTCATCAACTTACA
TCAATCAAAATACTAAATGAATTTATATGCATTTTAGAAAAACCTACCAT
CAAATTCATGGAAAGGTTACAGCAGAGCTACACTGAAGTCAATAAAAGCG
TGAGTGTGTTAATTATCGTCAAATTATTCTAAACTTGTAGATGAAAGTTG
TTGAAAGTCAGATGTCTTGAAATTCATCCTATTTTTTATATTTTAGAATC
TAGGATCACTCAAAACACTAGTAAATGATCCTGTATTCAAGTAAGAAGCC
ACTTTCTCTATGAAATCATGCATGCTTTTCCAAAATATTTAAAACAAAGA
TTTATTATACACTGGATAAACGACTCATAAAACGAAGGAGAGCGATCATT
GTATTTTCATTGTTTCAGAAAACAATTGATGTTCTAGCTTTGTCCGCAAA
GGACAACTGTCATGGCGGCTCGAAGATGTCTGATTTTTAAAAAGTTCTCT
AGCTCTTTCTTTTTATACATTTGCAGAAAAAAAACTTTGAAAGTAAGGCT
AGCATTCCAAGCTGGATACATTTGTGAAATCTAATGTGAGAAAAACATCA
TTAGACAAGAATTTCAGACAAAATGCTTTTANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGTGGTATGAAAATCCTTTGGAGGCACGTGGTGGCAA
GGTGGTTTTTTTGAGGTTGAAGTTTGAAAATTTCCGGTGTCAACATTCAA
TTTCTTATACACAACACGTCTCTTGCATCTTTCTCACAGCTTGAAACGTC
ATAACGACTTATAATTAGCAATTAAGTGGAAGAATCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAGTCTCTTTTGGGAATTGGATGAGTGATTTTCGATAAGAAATGCAA
TAAAAATGCTTCGAAAAATCATTTAATGAGGGAAGGAGAGTGAATAATAA
TATCATTACTACGGACATAGCTAGTACACGAGAAATCGGCAAAAATATGT
TACTTGTATATCCAGTGTATAATAAATCCTTGTTTAATAAAAGTAGACTG
CTACAGTATGTGTCATAGTGTTAGTGTTTTCAAAGAATTTGATCAAGTTT
TTTGGAATTTTCAAAATTATCTTCTTTTTTTCCTACTTTAATATATTCAC
CTGGTTCTTATAATTCTTTTATTAGATTTCCTTATATGGAGTTAGTGCAA
AGTCTAGAAACAATCACACTCAAACAAAATGAAGAGAAACTCAAATTCTT
CCGGTAAGAAACTCAATTAAAGGATGGAAAATATGAGTTAACGGCTACAA
CCCTGTCAAAAGTTACTGGTTCTTTTTAAAAAGAGCATCTTTTTTTTGTA
ATATAGGGCATGTTTTCTGTTTCTTTGGACCTCTGAAATTCCTGTATTTG
GTAACCCAAGAAAATTATGAAAGGGTGCCAAATAATTTGACATTTTTTGC
AAAATTCTTTTTCATTTATAAAAAAGGTGTTTTTTTTGTGTAAGTTCAAA
AATTTTGTATCTGTAACTCGAAAGTTATAAGCTTTTGATGTTAAAATTCA
CTTTTGAAAAAATACGTCAAAACAAAAGCTGTCACTGCTCATAATGTTTC
ACTTTTCTTTTTTTTTTATTACAGCTCGCTGATAAAGAATATACATGGTT
CCCCAAGCTTATCAGTGTGCCGAAGGTGTATCCCAACTTTATTCACAAGC
ACAGTTTTATCAGATCCAACTGCTGAATGTATACTTGATAGTCTCTTTGC
ATCAGGCAATGGTAATACACACTTTATTAAATCTCACCTCGACTCTTTCC
CCCTTTCTTCTCATTGCGTGTTCATGTTTTCAGCCGTAGCCGCCAATTGC
CGCATGGGTACTTTTTTGTCCGTTTATCACCCTAAACTCGTATCAGTTTT
TTTTCCAACCTAATACTAAAAAAAAGGTGTCAAAAAAGATTGGATCTACT
TTAGGGGGATGATTAATTAATCAAATGGCACCCGTCTGTCCGCGCGACTA
CGGTCGAAAAGGTCGATTTATAGTATATTTGATCACACATAGGATAAGTA
GCAATATAAAAAAATGTATTACAATAATAAATATGTATTACAATAATCTT
GATAGCATAAACATACTTGAGTCAGAAAAGGGACGAATGTTTTTAAATGA
AGCATGTTTCCCTACATCAAGCAGGATGCATCCGCTTTAAAGGAAGTTTT
AGGGAATTTAAATAATCTTACCATCAAAAATTTTTTTCAGCTGAAACACT
TTCACAGTCTATCCTACCGTTAATCGATAAAGAATATTTTCAGTAAGTAC
CCAAATACCATACCATTGTTTCCAGTGTTTGTATCTCAAAATCTTTCACT
CTCACAGTCTGTCACTGTGGGTGATGAGAGACTTTTCCAATGTATTGCGT
CTATGACAGAGGGTCAGCACATTAGGCTTTCAATTTTGAAAATCGATTAA
TGAAAATCTTGTTATCACCTTAATGGTATTAAATTTTGCGTGCGAATTCG
AGACTTTTTTTCGAGGAAACGTGTTTCGCGTGTATTAAATTTCGCGATTA
CCAGTTTTTGGAAATTTTCGCGTGTATTAAATTTGGCGATTCACTAAATT
GGGCATTTTCAAAAAGTGGGACTGATTTCGCTTGAAACACAACATATTGG
GTATAAACATACCAAATATACTAACAAAACTAGTGACAAAAATAGTAGCA
AAGTGTAACAAATAAGTATATTCAATTTTCGGCCTATTTTGAAAAATTTT
CGCGTGTATTTAATTTCGCGATTTTGTATTTTTGAAAAATTTAAACGGTA
CTAAATTTCGCGAAATTGGTCCTAAAAAATCGCGAAATTTTGTAAGCCGC
GAAATTTGATACCAATAAAAGAGTAGGACCTGCTTTGTTCCTTCAGTTTG
GTTTAGGGGAAGATTAGCTAATGTCACAAAGGTTATTGTAAAGACTGTAT
TGGAATTCTTCTGCAGTACTATTTAAATGTTAATCCTTGTCAAAATCAAC
AAGCAGTAGAGAAAACACTTTACCATTATCATAAAAATGCATATTTCTTT
TTTCAGTGAATATTGTATACCATGCATATTAAAACTATTCGAACTTCGTG
ATAAAGCAGTACGTTTGATTTTGCTGCAAAGACTTCCCCTTTATATCGAT
TGCATTGAAAAAAATATCCTCAAGGAGCAAATACTTCCAGAGGTAAGTGT
TTTTCTATCTCATTTATTTAAAACGTAGGACACTAGTAAATAAGAGACTA
TATATAAACTACTATTCCCTACTATTTTTTATTCAAAATACATGGTGCGG
ACTTGTAAATAGTCGTTTGACGCTAGATTTAAGCCCCTTCGGATTCTCCA
AATAATAATTTGATCCTGGATATTACGTCTCTTTATTTCACACTCCAAAC
TTAAAACTTTTAAACCAAGTTTTGTGTTTTGACTCTTGTTCTACTATTTG
GGGGGGGGGGGGCAAAAGGATTTAATGAATCAGAAAGTTCATATGTACGA
TAGTGTAAAGAAGCCCCTCGATTTTTTCAATTTTTTTTTTTTTTCTTTTT
TGGGGGGGGGGGAGGCAAAAGGATTTAATGAATCAGAAAGTTCATATGTA
CGATAGTCTACAGTAGCCTCTCGCTTATTCGAACTTCTCTTATTCGAATC
TTCAAAATATTCAATAAATATCCTCCACAACCATGTACAAAAATCTTCTG
AAAGAGTCCATTATGATTTTCTCTTTTCAGGTGTTAGCAGGCTTACAAGA
TGACGATGATTTGATGGTGTCTGCTACGTTGCGCGCTCTTTCATACTTTG
TCTTAATGATCGGTGGACAAGCCGTCGTTGGAAGTCAGGGAAGCAAACTC
TTCCACAACAGACTACCTGATGTAAGTCTTTTTTTACAAAAGTCTGAATT
GAATTTTTAATAGTTGTTAAAACTACATGTTTTTTTTATAAGCAGGTGTA
TGCCCCTTGGTCAGACTCGTGTATGCTTAAGTTCTTAAAGCATCCAGGCA
TATCTTATGCTTATTTTATGCTTATGAATCATGCTTATGATTCACCCCAA
GCTAATTTTTTAGTGAATTTTCAGAAATTTTGTAAACATTTGTTTAGATT
TTGGAAGCGATGGAGTGTAGCTAGCCGTGGAATGTCTTTTTTTACTTGAC
CTCTACCAAACCTTTTTAAACAGATAAAAAAATGACAACTTGAAAATTAT
TTCAGGCTGACATTATATGCTTATGTTATGCTTAGGAATTCTGCAAATCT
GAGCCTTCGTATGCTTTTGTTGCCCTTCCTCTCAAGATTTGAATTTTTTT
TGCTATCTTTAACCCGTTACTCCACAAATTCTCCCAAAATGTGGTCTGGG
AAAAAGGGTAATTCAAAAGTAATTTGTTTTCTTGTAAAAAAATATCTTTG
TTTCAATTTTTAGTTTTCAAGAGTCACCATGGATGAAGGTACTTTTTTAT
TTTATGCGTTGAGATTAGCTAATTTTTTTGAGGATAAAACTTTACGTTTT
AGTCAATAAATGAAAGGGTACGAATTAGTTCTTAAGAAATATTTTTTATT
CAGAGTATGAATAATTTTTGTTTTTTTTACCAAATAACCTAAAGATGTAA
GAATTTATAGCTTGGTAGTAATTCCAGTATAAAATCACTCATATCAGGTA
AATACTGTAGTCTCAATTCTGCTCAGAAAATCTAAAATTTTGGTAGTTTT
CCTTTTGATGGAAATTTTGAAAATCCATACCCTCTAGCAAAAGTGAGTAG
GAAATTATGTAATTGTCCTTTCGACACTAACCAGTCTTAAAAAACTTTTC
TGGCTTCTAGAGTGCTATTCGTGATATTTTGACGTAATGTTCCACGGATA
CACCCAGTAATGGTTAATTTAAACCATAGAAAAGTTGCCCGTAGAGAACA
TTAAGTCATGAGTAGTATCATGAATTAGAAAAACAAACAAAAAGAATTCA
TCCCGTATTTAGGTTTTTCAAGGAGCCCTCGCAAAGAAGCGAAGCTGAAA
ACCGATGAAGAGACTGACGTTTGCGAAGAACGAAGATTGAAACGCACTGA
ACGTGAAAAACAAAGAGAAGAGCAGAGGAAGCGGAGAGAAGAACGAAGGA
AAGAACGAGATTTGAATAAAGCGAAAAAAATCGAAAAACAAACATCCACA
GGTGAGTTGAATGAACACAAATAAAATAATCGTCTGCAACTCTAGGAAAT
TCGCTCCCCGGAAGCTCTTTAGGGAATTTTGTAACGTCACCATTATTATA
TAGTAGGTGGAAGTAAACTTTCTACTCGATTTTCTTCTAGATTTTCAATC
AACCGAAAAAGCTATCTACCTTAAACTGCTCTATTTTGGGGAACACAAGA
ATTTGTCAATTTTAATCAAGCTAGTGTTTCCATAGTTGATTTTGATAAGC
CTCGAAGCTAAGTACACATTGTACTATCATACATCAACTTTAACGAAAAG
AAACATAACTTAACGTTAACATTTCCCTTCAGGAGAATCACATTCTGAGG
ATAATGAAACTATTCAACAACCAACACTCATCGAAAACATAGGTGACTCA
TCATTTTTCCTCCATCGCATCAAGTTTAAGAACATCATTTAACTTATCCC
CTATCGTTTTCTTATACATAATTTTTAAACAAAAGAAAGAAATACTGTAT
TTTCTCCACTTACGGCCCCGTAGATGGGCGGAAATATCTTTAATGGTCGG
AAATATCATAGCGTAATGGTCGGAAGTATCATTTGATGGTCGGAAATATC
TTTTGATGGTCAGAAATATCCCGCGCTTTTAAAAATGCTTCATCAGCAAA
AAAATGTAAACAAAGATGGTAGTAAAGGTGGTGTGGTGTGGCCAACTTGT
TGTGTGTGCCAGACAAGCTTTTTAGGGAGAGAAAGTGGCATTGACCATTT
TATTCAAACACGACTCTCGTTCTTTCTTGTCTTTTTTATATCTTTTCCTC
CTCTAGCCCCCACTGTAAGGGTCATTTTTTGGCCAAATTTTCTCTGCATG
CACTGCCAGCTGGATGCACTGCCAGCTGGATGCAATGCCAGCTGGATGCA
ATGTAAGGGTTCGATTTTGGAAACCAAATTTTCCGCCGAACGTATGGTCG
TTTTCAGATCGAGTGCCCCCCCACCGGGGTAAGGTCTAGAATGGGAGGGT
GTCCAGGTAGGGTTGGGACTAGCTTTAGGGTAATTTGAGAGCAGGGGGGA
AGAGGAGGAAAGGATATAAAAAAAGACAAGAAAGAAAGAAAGAAGAGCCG
TGTTTGAATAAAACGGTCAATACCACTTTCTCTCCTTAACAAGCTGTCTA
CGTCTTGTGTAAAATACTGTATAAAGAACTAAGAAACAAAACAGCTCTCA
GATAGTGTCCCAAAAGCTTAAAATAAAAAACTACTCTTGTCTGGCACACA
CAACAAGTTGGCCACACCACACCACCTTTGCTACCATCTTTGTTTACATT
TTTTTGCTGATGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATCAAATGA
TATTTCCGACCATCAAATGATATTTCCGACCATTACGCTATGATATTTCC
GACCATTACGCTATGATATTTCCGACCATTAAAGATAATTCCGCCCGTCT
ACGGAAAAAAAATTTGCGGCGACGCGCGAGCACAAAATTTGCGAGTTTTT
TTGCTCATTCTGCTTTGCCAGCAAAGAGGCGTGCCTCCTTTGTATAGCAT
AAAGAAGATCATTAACTGGAACATACACGTTGGAACATGCACGAATTTCT
CATTTGCTTTTCGATTCTGTCGATATGTCCCTTACATGCTTCCCAAGTAA
ATGTTTTTGAAAATTCTTTTTAGGGCCATTCGCAAAAGTTTATGCTCGTG
AAAAATTCTTAATGAAGTATAAAATCTCCTAATCTAAATGAAATGTACTT
ATGGCACTTTTTAGCCTGTTAATTCTTCTAAGTATTGATAGCTGAAGGGA
CGACCAGAAAACTCGTTTGAGAAGACATTCGAGTTATAGAGGTTCGAGTT
ATGAAGACTTAACTGTATTTACATTTCAGTAACCAATCAAGAGAAAGAAG
AAAAATCACCGTCCAAAGAAGGTTCCGAAACTTCAGAAGCCGATTGGGAA
GGATTTATCGCTCAAGATGACGTAAGATTTGTTTCTGTGTTTCTCCTACA
ATCATATACAGAAATGTTTGAAGAAAACACTTGAAGTTACCTCAGAAATA
TCGAAAAAAAAAATCACTAGCCCCAACTGCAATGTTCAGTGTAAACAGTC
GTCCCACCGTTTGAGCATTGCAAATTGGGGGAAGGGGGAGCTGGGAACTC
GCTTTCATATTTTTTGTCCATGATCGTAGTATTGTTTTGTACGTTACATT
GATGCTAATGCCAAAATTGGGCCATTCTGTTCCAAACCGGGGGGGGGGGG
CGTTGAACTAACATTTCCAGGGAGTAATCAGAGAAGAATTTCAAAGGGTA
TAAAATAGTATTTTTTCTTTTTTCCAGCAGGTAAAAGGCTATTTCAAAAT
TTCCAGGGGCAAAAGACTGATTTTAGTTCGTCTACCCTCACTTTTAAGAT
ATTAAAAGAATTTTTCCAAGAGTTCTTTTGCAAATTTTGACGTTTTCCAC
ATATTTCTAAAAGTCTTTCTTTGACTTGAAAAGTTTCGTCCACCCCCTGT
ATGAAAATTTTATGGAACAGCCCATACCTACGTATATTTTAAGTCATATC
AGTCTACTTTAGGTTGTTCGAAGATTTGTAGAAAGAAATTGAGCAAAATA
AACTGATATCAATCGAGGTAGTGGACTACTAAACGCNAAATTGAGCAAAA
TAAACTGATATCAATCGAGGTAGTGGAATACTAAACGCTGTTTTTTTACA
AAGACCCTATGCATTTTATGTAATACATCTCGGTGAAAGTTCATTGATCT
GGTCTATAAAAATTAGCACATTGTAGCAGTCTGTCACTACTAGACGATGC
TATCATCCGCTTAGAGGGTCAGTAAACGCGGGCAATTATATATGCGCCCG
CAGAGTCAGGGCGTCAGGGTGGTTTACGGGAAAAAAAGTGGCGGTAGAGT
TTGTAACAAACACTGTAAACACACCTCCTCCACCACTGCTTACTCCACTC
TGCCCCGGCTTAACCAACGTTTTCTCCTTTTTTGATCATGTGTCGACGAT
AAGATCGTCTATGTCACTACTGAATCGTTTTTCCTATTTAATTTCAAGTT
CTTTTCTGTATACAGACTGAATCGACCGGGGAAGGTGATAAAGACGAATG
GGAATGGGACGAAAAGACTGAAGAACTTCCCAAAAACACGCTTCGAAAAC
AATCGCTCAAAAATACCGACGATGCATTCAATGGATTCAAAAACGACGAC
GAAGACGACTGGCAAACGGATTGGAACGAGCCCTCAGTTAACCATAGTAA
TACAAATAGAGATGTTGATAATAGTTTCCATGACAACGACGATGACGACC
AAGACGACTGGCAAACGGATTGGAATGAGAAAAATGTCGAAAATAGTGAC
TATATGACAAAAGTGACAGAAATTAAGAACAAAAGTAATAAAACATCTGA
AAAAAAGGAAAAAGAGACTAAAACTATTGAATCAAAAACAAAAGGAATGT
CCTTGTCTTCGAAAACAAAAACGAAAGTAACTCCCAAAGACAATAAAGAT
ACCAACACAACTACGAAAAAGACAGACTTGGGAGACGAATTTAGCATCAA
GATCAAACAGGAGTTCAGTAGCGAGCCGGATTATTTTGCAGACATGATAC
CAGACTTTAATGAAAAGAAAACAGTTCTCATCGAATCAAAGACCAATATT
ACGAATTCGAAATTCCAAGCAGCTCCCGACGATTCGGAGGTAGAGTATCT
GTCAACCTCGTCCCCGTGTATCCCAGGCTTTATTTACGTTACTTATGGAC
GCCAGATAATATTATCTAGTGCTATCAGTAAGCATAAAAAAGCTGATAAT
GCACAGGGAACGAGGTTGAGTATCTGTTAATCTTTATATTCGTGTAACAA
TGACGCGGTAAGAAATATTCAGCCAATATTTCTTTTTTTTATAAGAAGAA
ACTTTATAAAAACACGAGGCTTCGATGGTCAAAATCTTATCAAATCCAAA
GTTAAGAACAAGGAACTAAGGTTCCGTTTCGCTCCGGTATGATTTTTGTT
ACGGATCAAGTGGGTTCATATTGGCATGGATTTATCATAGAACTCTGGTT
ACACAACGAGCTGGTTTTTCATCGATTTCTCATGTTTTAGCCTTGTCCGC
AGTAATGACATTATTGTTCACCCTCCACCATTCACTAATCATTGTTTCGT
AAATTTTTGTATTGCTTTTTTCATCAAAACACAGCTATACAATTCCCATA
TGAGACTTAAAGATCTCTCAAGAGAGTCAAATGCATCAAATTAATTGCTA
ATAATATGTCGTTATGACGTTTCAAGCTATGAGAAAGATGCGACAAACAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTGACAGTTGTCCTTTGCGGACAAAGCTAGAT
CCTCGATTGTTTTCTAAAACAATGGAAAGACAATGGTTCGCTCTCCACCG
TTTTATTTGATGTTTATCAAGAGTTCTATGATAAATCCATGATATTGGTT
TCGGAATGTTTCGAAGCAAGAAAACGAAGCAGTTCCGTTCCGATAAAAAA
GTGGAATACCGTTTCGATTAGACTGGCACGCCAGTCGGAAAAAATTTTGT
CGGCGGCAAGGGCTGTTAATCAGCAGCCTCTCACCAACTTTTGCTCGCTC
TCCTACGCAGCTCCTATTCTAGCAAACGCCCGCCGCCTTTATGTTTGCTA
GTCTACGTTTCGATCTGTTCTGTTTGTAACGTCTTCTTTTTTGACATTTC
GAATTTTGACACACTTGTTTCGGAACCGGTTATGAACGGAACCGTAACGT
CTGAACATGGACTAAGGCTTCCAAACTCTTACTCAATTTTCTTAGGAAAT
CGCGAAAGTACTCACAAAATGGTGAAAATGAGCAAAATTTATTTAAAATC
AATATCAGGCAAAAAACTAAATAAGCTAAGAACATTTTATAAAAACACAT
TCCCTAGGACAATATGCAAAGTTTAAGTAATTTTTGGTACTACTTGAATA
ATATGTCCTCAAAATTCACGATGTAGTTTTTCCTTATAATAAAGATAATG
CTTTTATAATGTTTATTATGTCTATTCCTTCTGCATCTTTCAGGTGATGG
GCGGTTGGGGCGACGACGATGGTGTTGAAGATGGGTGGACCGATGATTTC
TAAAGTTAACTGTCTTATTTTCTTAGTATCTTCATGAATTTATATTATCT
TATTATCTATAGTAGTAGACTGACTCTAATAGCGAGGTTAAGCAAGAAGC
TATCTATTACGTACGGAATCTATTACGTGAGTTTTTAGGCTGGATCCGAG
GCGTTTTAGCCTGATTCCTAAAGCTTCACGGCATAGAAAAAAAAGTGGTT
AAGCAAAAAGGCGATCTATGACGTATGACGTAATGTTTATTTTTCCGTAT
CTCACTTTTGGCCCCAACTTATAAAATTTTATTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044836XLOC_044836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072213-exon-scaffold_71-1575043694:1154989..1155174TCONS_00072213-exon-scaffold_71-1575043694:1154989..1155174Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1153404..1153719TCONS_00072213-exon-scaffold_71-1575043694:1153404..1153719Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1152856..1152946TCONS_00072213-exon-scaffold_71-1575043694:1152856..1152946Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1152326..1152387TCONS_00072213-exon-scaffold_71-1575043694:1152326..1152387Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1152185..1152228TCONS_00072213-exon-scaffold_71-1575043694:1152185..1152228Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1150972..1151049TCONS_00072213-exon-scaffold_71-1575043694:1150972..1151049Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1150464..1150600TCONS_00072213-exon-scaffold_71-1575043694:1150464..1150600Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1149933..1149984TCONS_00072213-exon-scaffold_71-1575043694:1149933..1149984Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1149033..1149168TCONS_00072213-exon-scaffold_71-1575043694:1149033..1149168Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1148354..1148494TCONS_00072213-exon-scaffold_71-1575043694:1148354..1148494Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1147787..1147811TCONS_00072213-exon-scaffold_71-1575043694:1147787..1147811Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1147074..1147262TCONS_00072213-exon-scaffold_71-1575043694:1147074..1147262Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1146683..1146742TCONS_00072213-exon-scaffold_71-1575043694:1146683..1146742Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1144954..1145045TCONS_00072213-exon-scaffold_71-1575043694:1144954..1145045Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1143236..1143859TCONS_00072213-exon-scaffold_71-1575043694:1143236..1143859Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1575043694:1141237..1141581TCONS_00072213-exon-scaffold_71-1575043694:1141237..1141581Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1154989..1155174TCONS_00072213-exon-scaffold_71-1510915933:1154989..1155174Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1153404..1153719TCONS_00072213-exon-scaffold_71-1510915933:1153404..1153719Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1152856..1152946TCONS_00072213-exon-scaffold_71-1510915933:1152856..1152946Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1152326..1152387TCONS_00072213-exon-scaffold_71-1510915933:1152326..1152387Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1152185..1152228TCONS_00072213-exon-scaffold_71-1510915933:1152185..1152228Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1150972..1151049TCONS_00072213-exon-scaffold_71-1510915933:1150972..1151049Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1150464..1150600TCONS_00072213-exon-scaffold_71-1510915933:1150464..1150600Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1149933..1149984TCONS_00072213-exon-scaffold_71-1510915933:1149933..1149984Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1149033..1149168TCONS_00072213-exon-scaffold_71-1510915933:1149033..1149168Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1148354..1148494TCONS_00072213-exon-scaffold_71-1510915933:1148354..1148494Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1147787..1147811TCONS_00072213-exon-scaffold_71-1510915933:1147787..1147811Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1147074..1147262TCONS_00072213-exon-scaffold_71-1510915933:1147074..1147262Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1146683..1146742TCONS_00072213-exon-scaffold_71-1510915933:1146683..1146742Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1144954..1145045TCONS_00072213-exon-scaffold_71-1510915933:1144954..1145045Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1143236..1143859TCONS_00072213-exon-scaffold_71-1510915933:1143236..1143859Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1510915933:1141237..1141581TCONS_00072213-exon-scaffold_71-1510915933:1141237..1141581Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1154989..1155174TCONS_00072213-exon-scaffold_71-1491911889:1154989..1155174Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1153404..1153719TCONS_00072213-exon-scaffold_71-1491911889:1153404..1153719Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1152856..1152946TCONS_00072213-exon-scaffold_71-1491911889:1152856..1152946Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1152326..1152387TCONS_00072213-exon-scaffold_71-1491911889:1152326..1152387Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1152185..1152228TCONS_00072213-exon-scaffold_71-1491911889:1152185..1152228Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1150972..1151049TCONS_00072213-exon-scaffold_71-1491911889:1150972..1151049Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1150464..1150600TCONS_00072213-exon-scaffold_71-1491911889:1150464..1150600Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1149933..1149984TCONS_00072213-exon-scaffold_71-1491911889:1149933..1149984Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1149033..1149168TCONS_00072213-exon-scaffold_71-1491911889:1149033..1149168Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1148354..1148494TCONS_00072213-exon-scaffold_71-1491911889:1148354..1148494Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1147787..1147811TCONS_00072213-exon-scaffold_71-1491911889:1147787..1147811Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1147074..1147262TCONS_00072213-exon-scaffold_71-1491911889:1147074..1147262Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1146683..1146742TCONS_00072213-exon-scaffold_71-1491911889:1146683..1146742Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1144954..1145045TCONS_00072213-exon-scaffold_71-1491911889:1144954..1145045Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1143236..1143859TCONS_00072213-exon-scaffold_71-1491911889:1143236..1143859Clytia hemisphaericaexon
TCONS_00072213-exon-scaffold_71-1491911889:1141237..1141581TCONS_00072213-exon-scaffold_71-1491911889:1141237..1141581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1141237..1155174 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237676	0	0.221749	0.737686	1.21429e-05	1.88229e-06	5.54345e-05	2.85775e-08	0.204406	0.476796	0	0.928527	1.70319	0.100893	0.467812	0.116179	1.32469	0.533706	1.52616	0.0262099	0.913383	0.422695	0.222683	0	4.4002e-09	0.00121928	5.98447e-09	0	0	0
Blast
[Close]
BLAST of TCONS_00072213 vs. Swiss-Prot (Human)
Match: PACE1 (Protein-associating with the carboxyl-terminal domain of ezrin OS=Homo sapiens GN=SCYL3 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.922e-32
Identity = 91/315 (28.89%), Postives = 157/315 (49.84%), Query Frame = 2 
Query:  416 LCHNNINVSTVYVTKRGDWKLALFEHSSKI----------VQTARD--------------------SYSQDAIGYGELALSILEYLNDDQKPTI--KFMERLQQSYTEVNKSNLGSLKTLVNDPVFKFPYMELVQSLETITLKQNEEKLKFFRSLIKNIHGSPSLSVCRRCIPTLFTSTVLSDPTA-ECILDSLFASGNAETLSQSILP-LIDKEYFHEYCIPCILKLFELRDKAVRLILLQRLPLYIDCIEKNILKEQILPEVLAGLQDDDDLMVSATLRALSYFVLMIGGQAVVGSQGSKLFHNRLPDFSRVT 1258
            L HNN+ +S+V+V++ G WKL   E   K+          +Q+ RD                     +++DA  +G L  S+L  LN+     +   F + L  +          +L TL++   F+  ++E+V  L+++TLK  EEK +FF+ L+  +       +  R +P L    V ++P A +  L  L   G  +  +Q   P L+    F    IP +L+LFE+ ++ VR++LL  +  Y++   +  LK+ ILP+VL GL+D  D +V+ TL +L+  V ++G + VVG + +K+F    P F++ T
Sbjct:  120 LTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLL--GPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNT 432
The following BLAST results are available for this feature:
BLAST of TCONS_00072213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PACE11.922e-3228.89Protein-associating with the carboxyl-terminal dom... [more]
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