TCONS_00072212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072212
Unique NameTCONS_00072212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072212 ID=TCONS_00072212|Name=TCONS_00072212|organism=Clytia hemisphaerica|type=transcript|length=2539bp
AAATTCCAACATGGAGAAGTGTTTGAATCAGAATCAGATTACCTCACTAT
TGCTTCAGCCCAGGATCAAACAGGCGACAACAAGTACACAGTTTTCCAAT
ATTTAAAGAATTCACCAGGAATTGAACCTGCTAAGAAAAACATTCAGGTA
TCAAAAGGAATACGGCATCCTTACATACTTAAGTTTGTCAACACTTTTGA
AGATTCAAAACACATGACTTTGGTGACTGAAGATGCAGCNaccgaaagta
aatggtagacaaagtaatgagccaaggcaaaacgagattagcgtaccact
atgaaagaaaccgcctccggcggtcgattattgattgtcaaaatatattt
tatgttttttttgttcataGATTGGGCTTTGTCACAATAACATCAATGTT
TCCACTGTGTATGTCACCAAGAGAGGGGATTGGAAACTTGCCTTGTTTGA
ACATTCTTCCAAGATTGTGCAAACTGCAAGAGATAGTTATAGTCAAGATG
CTATTGGCTATGGCGAATTAGCACTGAGTATCCTGGAATACTTGAATGAT
GATCAAAAACCTACCATCAAATTCATGGAAAGGTTACAGCAGAGCTACAC
TGAAGTCAATAAAAGCaatCTAGGATCACTCAAAACACTAGTAAATGATC
CTGTATTCAAATTTCCTTATATGGAGTTAGTGCAAAGTCTAGAAACAATC
ACACTCAAACAAAATGAAGAGAAACTCAAATTCTTCCGcTCGCTGATAAA
GAATATACATGGTTCCCCAAGCTTATCAGTGTGCCGAAGGTGTATCCCAA
CTTTATTCACAAGCACAGTTTTATCAGATCCAACTGCTGAATGTATACTT
GATAGTCTCTTTGCATCAGGCAATGctgAAACACTTTCACAGTCTATCCT
ACCGTTAATcgataaagaatattttcatgAATATTGTATACCATGCATAT
TAAAACTATTCGAACTTCGTGATAAAGCAGTACGTTTGATTTTGCTGCAA
AGACTTCCCCTTTATATcgattgcattgaaaaaaatatcctcAAGGAGCA
AATACTTCCAGAGGTGTTAGCAGGCTTACAAGATGACGATGATTTGATGG
TGTCTGCTACGTTGCGCGCTCTTTCATACTTTGTCTTAATGATCGGTGGA
CAAGCCGTCGTTGGAAGTCAGGGAAGCAAACTCTTCCACAACAGACTACC
TGATttttcaagagtcACCATGGATGAagGTTTTTCAAGGAGCCCTCGCA
AAGAAGCGAAGCTGAAAACCGATGAAGAGACTGACGTTTGCGAAGAACGA
AGATTGAAACGCACTGAACGTGAAAAACAAAGAGAAGAGCAGAGGAAGCG
GAGAGAAGAACGAAGGAAAGAACGAGATTtgaataaagcgaaaaaaatcg
aaaaacaaacATCCACAGGAGAATCACATTCTGAGGATAATGAAACTATT
CAACAACCAACACTCATCGAAAACATAGTAACCAATcaagagaaagaaga
aaaatcaccGTCCAAAGAAGGTTCCGAAACTTCAGAAGCCGATTGGGAAG
GATTTATCGCTCAAGATGACACTGAATCGACCGGGGAAGGTGATAAAGAC
GAATGGGAATGGGACGAAAAGACTGAAGAACTTCCCAAAAACACGCTTCG
AAAACAATCGCTCAAAAATACCGACGATGCATTCAATGGATTCAAAAACG
ACGACGAAGACGACTGGCAAACGGATTGGAACGAGCCCTCAGTTAACCAT
AGTAATACAAATAGAGATGTTGATAATAGTTTCCATGACAACGACGATGA
CGACCAAGACGACTGGCAAACGGATTGGAATGAgaaaaatgtcgaaaata
gTGACTATATGACAAAAGTGACAGAAATTAAGAACAAAAGTAATAAAACA
tctgaaaaaaaggaaaaagagacTAAAACTATTGaatcaaaaacaaaagg
aaTGTCCTTGTCTtcgaaaacaaaaacgaaagtaacTCCCAAAGACAATA
AAGATACCAACACAACTACGAAAAAGACAGACTTGGGAGACGAATTTAGC
ATCAAGATCAAACAGGAGTTCAGTAGCGAGCCGGATTATTTTGCAGACAT
GATACCAGActttaatgaaaagaaaacagttCTCATCGAATCAAAGACCA
ATATTACGAATTCGAAATTCCAAGCAGCTCCCGACGATTCGGAGGTGATG
GGCGGTTGGGGCGACGACGATGGTGTTGAAGATGGGTGGACCGATGATTT
CTAAAGTTAACTGTCTTATTTTCTTAGTATCTTCATGAATTTATATTATC
TTATTATCTATAGTAGTAGACTGACtctaatagcgaggttaagcaagaag
ctatctattacgtacggaatctattacgtgagtttttagGCTGGATCCGA
GGCGTTTTAGCCTGATTCCTAAAGCTTCACGGCATAGAAAAAAAAGTGGT
TAAGCAAAAAGGCGATCTATGacgtatgacgtaatgtttatttttccgtA
TCTCACTTTTGGCCCCaacttataaaattttatttttct
Run BLAST on NCBI

transcript from alignment at scaffold_71:1141237..1154195-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072212 ID=TCONS_00072212|Name=TCONS_00072212|organism=Clytia hemisphaerica|type=transcript|length=12959bp|location=Sequence derived from alignment at scaffold_71:1141237..1154195- (Clytia hemisphaerica)
AAATTCCAACATGGAGAAGTGTTTGAATCAGAATCAGATTACCTCACTAT
TGCTTCAGCCCAGGATCAAACAGGCGACAACAAGTACACAGTTTTCCAAT
ATTTAAAGAATTCACCAGGAATTGAACCTGCTAAGAAAAACATTCAGGTA
AGATCTGATCAATACTTTTGTTGTAAGCTTTTATCTTAATAAGTTGTATT
GTTCTAAAATCGCTTTTATTGAATTTACTGAATGAAACTAAAGGAAAGGG
TCCGAGATGTGATAATTTTATCATAATACAGTATCGTAATCAGATCAATA
TCAATTTGTGCCAAAATAAACATTCATGTCCAAAAGTAAGATAAACGCAT
AGATTAAAAAGTGCATACTGCAAAACTTTGTCTCAAAAATTTATATCATT
ATCAAAAAATTTTCAAATAGACAAAAGACTTTTATGATACTTAACAATTT
ATAACACTCCTTCAATTATTTTACAGGTATCAAAAGGAATACGGCATCCT
TACATACTTAAGTTTGTCAACACTTTTGAAGATTCAAAACACATGACTTT
GGTGACTGAAGATGCAGCNACCGAAAGTAAATGGTAGACAAAGTAATGAG
CCAAGGCAAAACGAGATTAGCGTACCACTATGAAAGAAACCGCCTCCGGC
GGTCGATTATTGATTGTCAAAATATATTTTATGTTTTTTTTGTTCATAGA
TTGGGCTTTGTCACAATAACATCAATGTTTCCACTGTGTATGTCACCAAG
AGAGGGGATTGGAAACTTGCCTTGTTTGAACATTCTTCCAAGGTATGTAC
ATTGTCTCATACCTATGTTAATTCCTCATCTTTTTGTGTGCTGAATATAA
ACCATCAGATATGTTTTTTTTGTTTACCCACCTAAAGTTATGATCACGAG
AAACCAAAATCAAATAGAATCACAAAGTGCTCTAGAAAATTATTTCTGCA
ATTTTGGTAGGCATATTCTAGCTTACTTTGACCTTTACAACCTTTTTTAA
GCTATTTGAGCTTGCTTAGAGCAAAACTTTTCGCTTTCAGTGCTTAAGTT
ACAAGAAAAATTTGCCTCCCGAACCGAATTTTTTTGAGAATATCCAGAGG
GTGCAAATTTTTTTTTTGAATATTTGAAAATATCCTCCNCTCCCGAACCG
AAATTTTTTGAGAATATCAAGGGGGTGCAAATTTTTTTTTTAATATTTGA
AAATATCCTCCACCACACCCTAGTAGATACTTTCTGACCACTTCCTTAGA
TTGTGCAAACTGCAAGAGATAGTTATAGTCAAGATGCTATTGGCTATGGC
GAATTAGCACTGAGTATCCTGGAATACTTGAATGATGATCGTAAGTCTTA
AACATCCTTGTCTTTCAACCCAATCTACGGGCTATCCAATGAGGAAAATC
TCTTAAATACATTAGAGTGTATCTGATAAAAAAATATTCGATTCAAAATA
GTTTTCTTTCAATAAAAGTTTCGTTTATTTTCAATTTTACTTGGCTCTGG
TATCTTGTTTGTTTATCATCGTTCACTATTCAGTTTGATTTCATTGCAAT
AATTTGAGTGTAAATGATAAAATAAAACATAGGAAGGTTTTGGTTCGTAA
GTCGTAGTACCGTTTCTGATTTAGTGCAACAACTCCCACATGGTAAAAAC
TGTTTATTAAATTAAGTAATAAATAATAATACCATTGATAAATATATTTG
AAGACATTGTTTTTATTATTATTCTTTTTGTCACCCAGCTCATCGATTCA
CCAAGCCTTCATCAACTTACATCAATCAAAATACTAAATGAATTTATATG
CATTTTAGAAAAACCTACCATCAAATTCATGGAAAGGTTACAGCAGAGCT
ACACTGAAGTCAATAAAAGCGTGAGTGTGTTAATTATCGTCAAATTATTC
TAAACTTGTAGATGAAAGTTGTTGAAAGTCAGATGTCTTGAAATTCATCC
TATTTTTTATATTTTAGAATCTAGGATCACTCAAAACACTAGTAAATGAT
CCTGTATTCAAGTAAGAAGCCACTTTCTCTATGAAATCATGCATGCTTTT
CCAAAATATTTAAAACAAAGATTTATTATACACTGGATAAACGACTCATA
AAACGAAGGAGAGCGATCATTGTATTTTCATTGTTTCAGAAAACAATTGA
TGTTCTAGCTTTGTCCGCAAAGGACAACTGTCATGGCGGCTCGAAGATGT
CTGATTTTTAAAAAGTTCTCTAGCTCTTTCTTTTTATACATTTGCAGAAA
AAAAACTTTGAAAGTAAGGCTAGCATTCCAAGCTGGATACATTTGTGAAA
TCTAATGTGAGAAAAACATCATTAGACAAGAATTTCAGACAAAATGCTTT
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTATGAAAATCC
TTTGGAGGCACGTGGTGGCAAGGTGGTTTTTTTGAGGTTGAAGTTTGAAA
ATTTCCGGTGTCAACATTCAATTTCTTATACACAACACGTCTCTTGCATC
TTTCTCACAGCTTGAAACGTCATAACGACTTATAATTAGCAATTAAGTGG
AAGAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAGTCTCTTTTGGGAATTGGATGAGT
GATTTTCGATAAGAAATGCAATAAAAATGCTTCGAAAAATCATTTAATGA
GGGAAGGAGAGTGAATAATAATATCATTACTACGGACATAGCTAGTACAC
GAGAAATCGGCAAAAATATGTTACTTGTATATCCAGTGTATAATAAATCC
TTGTTTAATAAAAGTAGACTGCTACAGTATGTGTCATAGTGTTAGTGTTT
TCAAAGAATTTGATCAAGTTTTTTGGAATTTTCAAAATTATCTTCTTTTT
TTCCTACTTTAATATATTCACCTGGTTCTTATAATTCTTTTATTAGATTT
CCTTATATGGAGTTAGTGCAAAGTCTAGAAACAATCACACTCAAACAAAA
TGAAGAGAAACTCAAATTCTTCCGGTAAGAAACTCAATTAAAGGATGGAA
AATATGAGTTAACGGCTACAACCCTGTCAAAAGTTACTGGTTCTTTTTAA
AAAGAGCATCTTTTTTTTGTAATATAGGGCATGTTTTCTGTTTCTTTGGA
CCTCTGAAATTCCTGTATTTGGTAACCCAAGAAAATTATGAAAGGGTGCC
AAATAATTTGACATTTTTTGCAAAATTCTTTTTCATTTATAAAAAAGGTG
TTTTTTTTGTGTAAGTTCAAAAATTTTGTATCTGTAACTCGAAAGTTATA
AGCTTTTGATGTTAAAATTCACTTTTGAAAAAATACGTCAAAACAAAAGC
TGTCACTGCTCATAATGTTTCACTTTTCTTTTTTTTTTATTACAGCTCGC
TGATAAAGAATATACATGGTTCCCCAAGCTTATCAGTGTGCCGAAGGTGT
ATCCCAACTTTATTCACAAGCACAGTTTTATCAGATCCAACTGCTGAATG
TATACTTGATAGTCTCTTTGCATCAGGCAATGGTAATACACACTTTATTA
AATCTCACCTCGACTCTTTCCCCCTTTCTTCTCATTGCGTGTTCATGTTT
TCAGCCGTAGCCGCCAATTGCCGCATGGGTACTTTTTTGTCCGTTTATCA
CCCTAAACTCGTATCAGTTTTTTTTCCAACCTAATACTAAAAAAAAGGTG
TCAAAAAAGATTGGATCTACTTTAGGGGGATGATTAATTAATCAAATGGC
ACCCGTCTGTCCGCGCGACTACGGTCGAAAAGGTCGATTTATAGTATATT
TGATCACACATAGGATAAGTAGCAATATAAAAAAATGTATTACAATAATA
AATATGTATTACAATAATCTTGATAGCATAAACATACTTGAGTCAGAAAA
GGGACGAATGTTTTTAAATGAAGCATGTTTCCCTACATCAAGCAGGATGC
ATCCGCTTTAAAGGAAGTTTTAGGGAATTTAAATAATCTTACCATCAAAA
ATTTTTTTCAGCTGAAACACTTTCACAGTCTATCCTACCGTTAATCGATA
AAGAATATTTTCAGTAAGTACCCAAATACCATACCATTGTTTCCAGTGTT
TGTATCTCAAAATCTTTCACTCTCACAGTCTGTCACTGTGGGTGATGAGA
GACTTTTCCAATGTATTGCGTCTATGACAGAGGGTCAGCACATTAGGCTT
TCAATTTTGAAAATCGATTAATGAAAATCTTGTTATCACCTTAATGGTAT
TAAATTTTGCGTGCGAATTCGAGACTTTTTTTCGAGGAAACGTGTTTCGC
GTGTATTAAATTTCGCGATTACCAGTTTTTGGAAATTTTCGCGTGTATTA
AATTTGGCGATTCACTAAATTGGGCATTTTCAAAAAGTGGGACTGATTTC
GCTTGAAACACAACATATTGGGTATAAACATACCAAATATACTAACAAAA
CTAGTGACAAAAATAGTAGCAAAGTGTAACAAATAAGTATATTCAATTTT
CGGCCTATTTTGAAAAATTTTCGCGTGTATTTAATTTCGCGATTTTGTAT
TTTTGAAAAATTTAAACGGTACTAAATTTCGCGAAATTGGTCCTAAAAAA
TCGCGAAATTTTGTAAGCCGCGAAATTTGATACCAATAAAAGAGTAGGAC
CTGCTTTGTTCCTTCAGTTTGGTTTAGGGGAAGATTAGCTAATGTCACAA
AGGTTATTGTAAAGACTGTATTGGAATTCTTCTGCAGTACTATTTAAATG
TTAATCCTTGTCAAAATCAACAAGCAGTAGAGAAAACACTTTACCATTAT
CATAAAAATGCATATTTCTTTTTTCAGTGAATATTGTATACCATGCATAT
TAAAACTATTCGAACTTCGTGATAAAGCAGTACGTTTGATTTTGCTGCAA
AGACTTCCCCTTTATATCGATTGCATTGAAAAAAATATCCTCAAGGAGCA
AATACTTCCAGAGGTAAGTGTTTTTCTATCTCATTTATTTAAAACGTAGG
ACACTAGTAAATAAGAGACTATATATAAACTACTATTCCCTACTATTTTT
TATTCAAAATACATGGTGCGGACTTGTAAATAGTCGTTTGACGCTAGATT
TAAGCCCCTTCGGATTCTCCAAATAATAATTTGATCCTGGATATTACGTC
TCTTTATTTCACACTCCAAACTTAAAACTTTTAAACCAAGTTTTGTGTTT
TGACTCTTGTTCTACTATTTGGGGGGGGGGGGGCAAAAGGATTTAATGAA
TCAGAAAGTTCATATGTACGATAGTGTAAAGAAGCCCCTCGATTTTTTCA
ATTTTTTTTTTTTTTCTTTTTTGGGGGGGGGGGAGGCAAAAGGATTTAAT
GAATCAGAAAGTTCATATGTACGATAGTCTACAGTAGCCTCTCGCTTATT
CGAACTTCTCTTATTCGAATCTTCAAAATATTCAATAAATATCCTCCACA
ACCATGTACAAAAATCTTCTGAAAGAGTCCATTATGATTTTCTCTTTTCA
GGTGTTAGCAGGCTTACAAGATGACGATGATTTGATGGTGTCTGCTACGT
TGCGCGCTCTTTCATACTTTGTCTTAATGATCGGTGGACAAGCCGTCGTT
GGAAGTCAGGGAAGCAAACTCTTCCACAACAGACTACCTGATGTAAGTCT
TTTTTTACAAAAGTCTGAATTGAATTTTTAATAGTTGTTAAAACTACATG
TTTTTTTTATAAGCAGGTGTATGCCCCTTGGTCAGACTCGTGTATGCTTA
AGTTCTTAAAGCATCCAGGCATATCTTATGCTTATTTTATGCTTATGAAT
CATGCTTATGATTCACCCCAAGCTAATTTTTTAGTGAATTTTCAGAAATT
TTGTAAACATTTGTTTAGATTTTGGAAGCGATGGAGTGTAGCTAGCCGTG
GAATGTCTTTTTTTACTTGACCTCTACCAAACCTTTTTAAACAGATAAAA
AAATGACAACTTGAAAATTATTTCAGGCTGACATTATATGCTTATGTTAT
GCTTAGGAATTCTGCAAATCTGAGCCTTCGTATGCTTTTGTTGCCCTTCC
TCTCAAGATTTGAATTTTTTTTGCTATCTTTAACCCGTTACTCCACAAAT
TCTCCCAAAATGTGGTCTGGGAAAAAGGGTAATTCAAAAGTAATTTGTTT
TCTTGTAAAAAAATATCTTTGTTTCAATTTTTAGTTTTCAAGAGTCACCA
TGGATGAAGGTACTTTTTTATTTTATGCGTTGAGATTAGCTAATTTTTTT
GAGGATAAAACTTTACGTTTTAGTCAATAAATGAAAGGGTACGAATTAGT
TCTTAAGAAATATTTTTTATTCAGAGTATGAATAATTTTTGTTTTTTTTA
CCAAATAACCTAAAGATGTAAGAATTTATAGCTTGGTAGTAATTCCAGTA
TAAAATCACTCATATCAGGTAAATACTGTAGTCTCAATTCTGCTCAGAAA
ATCTAAAATTTTGGTAGTTTTCCTTTTGATGGAAATTTTGAAAATCCATA
CCCTCTAGCAAAAGTGAGTAGGAAATTATGTAATTGTCCTTTCGACACTA
ACCAGTCTTAAAAAACTTTTCTGGCTTCTAGAGTGCTATTCGTGATATTT
TGACGTAATGTTCCACGGATACACCCAGTAATGGTTAATTTAAACCATAG
AAAAGTTGCCCGTAGAGAACATTAAGTCATGAGTAGTATCATGAATTAGA
AAAACAAACAAAAAGAATTCATCCCGTATTTAGGTTTTTCAAGGAGCCCT
CGCAAAGAAGCGAAGCTGAAAACCGATGAAGAGACTGACGTTTGCGAAGA
ACGAAGATTGAAACGCACTGAACGTGAAAAACAAAGAGAAGAGCAGAGGA
AGCGGAGAGAAGAACGAAGGAAAGAACGAGATTTGAATAAAGCGAAAAAA
ATCGAAAAACAAACATCCACAGGTGAGTTGAATGAACACAAATAAAATAA
TCGTCTGCAACTCTAGGAAATTCGCTCCCCGGAAGCTCTTTAGGGAATTT
TGTAACGTCACCATTATTATATAGTAGGTGGAAGTAAACTTTCTACTCGA
TTTTCTTCTAGATTTTCAATCAACCGAAAAAGCTATCTACCTTAAACTGC
TCTATTTTGGGGAACACAAGAATTTGTCAATTTTAATCAAGCTAGTGTTT
CCATAGTTGATTTTGATAAGCCTCGAAGCTAAGTACACATTGTACTATCA
TACATCAACTTTAACGAAAAGAAACATAACTTAACGTTAACATTTCCCTT
CAGGAGAATCACATTCTGAGGATAATGAAACTATTCAACAACCAACACTC
ATCGAAAACATAGGTGACTCATCATTTTTCCTCCATCGCATCAAGTTTAA
GAACATCATTTAACTTATCCCCTATCGTTTTCTTATACATAATTTTTAAA
CAAAAGAAAGAAATACTGTATTTTCTCCACTTACGGCCCCGTAGATGGGC
GGAAATATCTTTAATGGTCGGAAATATCATAGCGTAATGGTCGGAAGTAT
CATTTGATGGTCGGAAATATCTTTTGATGGTCAGAAATATCCCGCGCTTT
TAAAAATGCTTCATCAGCAAAAAAATGTAAACAAAGATGGTAGTAAAGGT
GGTGTGGTGTGGCCAACTTGTTGTGTGTGCCAGACAAGCTTTTTAGGGAG
AGAAAGTGGCATTGACCATTTTATTCAAACACGACTCTCGTTCTTTCTTG
TCTTTTTTATATCTTTTCCTCCTCTAGCCCCCACTGTAAGGGTCATTTTT
TGGCCAAATTTTCTCTGCATGCACTGCCAGCTGGATGCACTGCCAGCTGG
ATGCAATGCCAGCTGGATGCAATGTAAGGGTTCGATTTTGGAAACCAAAT
TTTCCGCCGAACGTATGGTCGTTTTCAGATCGAGTGCCCCCCCACCGGGG
TAAGGTCTAGAATGGGAGGGTGTCCAGGTAGGGTTGGGACTAGCTTTAGG
GTAATTTGAGAGCAGGGGGGAAGAGGAGGAAAGGATATAAAAAAAGACAA
GAAAGAAAGAAAGAAGAGCCGTGTTTGAATAAAACGGTCAATACCACTTT
CTCTCCTTAACAAGCTGTCTACGTCTTGTGTAAAATACTGTATAAAGAAC
TAAGAAACAAAACAGCTCTCAGATAGTGTCCCAAAAGCTTAAAATAAAAA
ACTACTCTTGTCTGGCACACACAACAAGTTGGCCACACCACACCACCTTT
GCTACCATCTTTGTTTACATTTTTTTGCTGATGAAGCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACCATCAAATGATATTTCCGACCATCAAATGATATTTCCGA
CCATTACGCTATGATATTTCCGACCATTACGCTATGATATTTCCGACCAT
TAAAGATAATTCCGCCCGTCTACGGAAAAAAAATTTGCGGCGACGCGCGA
GCACAAAATTTGCGAGTTTTTTTGCTCATTCTGCTTTGCCAGCAAAGAGG
CGTGCCTCCTTTGTATAGCATAAAGAAGATCATTAACTGGAACATACACG
TTGGAACATGCACGAATTTCTCATTTGCTTTTCGATTCTGTCGATATGTC
CCTTACATGCTTCCCAAGTAAATGTTTTTGAAAATTCTTTTTAGGGCCAT
TCGCAAAAGTTTATGCTCGTGAAAAATTCTTAATGAAGTATAAAATCTCC
TAATCTAAATGAAATGTACTTATGGCACTTTTTAGCCTGTTAATTCTTCT
AAGTATTGATAGCTGAAGGGACGACCAGAAAACTCGTTTGAGAAGACATT
CGAGTTATAGAGGTTCGAGTTATGAAGACTTAACTGTATTTACATTTCAG
TAACCAATCAAGAGAAAGAAGAAAAATCACCGTCCAAAGAAGGTTCCGAA
ACTTCAGAAGCCGATTGGGAAGGATTTATCGCTCAAGATGACGTAAGATT
TGTTTCTGTGTTTCTCCTACAATCATATACAGAAATGTTTGAAGAAAACA
CTTGAAGTTACCTCAGAAATATCGAAAAAAAAAATCACTAGCCCCAACTG
CAATGTTCAGTGTAAACAGTCGTCCCACCGTTTGAGCATTGCAAATTGGG
GGAAGGGGGAGCTGGGAACTCGCTTTCATATTTTTTGTCCATGATCGTAG
TATTGTTTTGTACGTTACATTGATGCTAATGCCAAAATTGGGCCATTCTG
TTCCAAACCGGGGGGGGGGGGCGTTGAACTAACATTTCCAGGGAGTAATC
AGAGAAGAATTTCAAAGGGTATAAAATAGTATTTTTTCTTTTTTCCAGCA
GGTAAAAGGCTATTTCAAAATTTCCAGGGGCAAAAGACTGATTTTAGTTC
GTCTACCCTCACTTTTAAGATATTAAAAGAATTTTTCCAAGAGTTCTTTT
GCAAATTTTGACGTTTTCCACATATTTCTAAAAGTCTTTCTTTGACTTGA
AAAGTTTCGTCCACCCCCTGTATGAAAATTTTATGGAACAGCCCATACCT
ACGTATATTTTAAGTCATATCAGTCTACTTTAGGTTGTTCGAAGATTTGT
AGAAAGAAATTGAGCAAAATAAACTGATATCAATCGAGGTAGTGGACTAC
TAAACGCNAAATTGAGCAAAATAAACTGATATCAATCGAGGTAGTGGAAT
ACTAAACGCTGTTTTTTTACAAAGACCCTATGCATTTTATGTAATACATC
TCGGTGAAAGTTCATTGATCTGGTCTATAAAAATTAGCACATTGTAGCAG
TCTGTCACTACTAGACGATGCTATCATCCGCTTAGAGGGTCAGTAAACGC
GGGCAATTATATATGCGCCCGCAGAGTCAGGGCGTCAGGGTGGTTTACGG
GAAAAAAAGTGGCGGTAGAGTTTGTAACAAACACTGTAAACACACCTCCT
CCACCACTGCTTACTCCACTCTGCCCCGGCTTAACCAACGTTTTCTCCTT
TTTTGATCATGTGTCGACGATAAGATCGTCTATGTCACTACTGAATCGTT
TTTCCTATTTAATTTCAAGTTCTTTTCTGTATACAGACTGAATCGACCGG
GGAAGGTGATAAAGACGAATGGGAATGGGACGAAAAGACTGAAGAACTTC
CCAAAAACACGCTTCGAAAACAATCGCTCAAAAATACCGACGATGCATTC
AATGGATTCAAAAACGACGACGAAGACGACTGGCAAACGGATTGGAACGA
GCCCTCAGTTAACCATAGTAATACAAATAGAGATGTTGATAATAGTTTCC
ATGACAACGACGATGACGACCAAGACGACTGGCAAACGGATTGGAATGAG
AAAAATGTCGAAAATAGTGACTATATGACAAAAGTGACAGAAATTAAGAA
CAAAAGTAATAAAACATCTGAAAAAAAGGAAAAAGAGACTAAAACTATTG
AATCAAAAACAAAAGGAATGTCCTTGTCTTCGAAAACAAAAACGAAAGTA
ACTCCCAAAGACAATAAAGATACCAACACAACTACGAAAAAGACAGACTT
GGGAGACGAATTTAGCATCAAGATCAAACAGGAGTTCAGTAGCGAGCCGG
ATTATTTTGCAGACATGATACCAGACTTTAATGAAAAGAAAACAGTTCTC
ATCGAATCAAAGACCAATATTACGAATTCGAAATTCCAAGCAGCTCCCGA
CGATTCGGAGGTAGAGTATCTGTCAACCTCGTCCCCGTGTATCCCAGGCT
TTATTTACGTTACTTATGGACGCCAGATAATATTATCTAGTGCTATCAGT
AAGCATAAAAAAGCTGATAATGCACAGGGAACGAGGTTGAGTATCTGTTA
ATCTTTATATTCGTGTAACAATGACGCGGTAAGAAATATTCAGCCAATAT
TTCTTTTTTTTATAAGAAGAAACTTTATAAAAACACGAGGCTTCGATGGT
CAAAATCTTATCAAATCCAAAGTTAAGAACAAGGAACTAAGGTTCCGTTT
CGCTCCGGTATGATTTTTGTTACGGATCAAGTGGGTTCATATTGGCATGG
ATTTATCATAGAACTCTGGTTACACAACGAGCTGGTTTTTCATCGATTTC
TCATGTTTTAGCCTTGTCCGCAGTAATGACATTATTGTTCACCCTCCACC
ATTCACTAATCATTGTTTCGTAAATTTTTGTATTGCTTTTTTCATCAAAA
CACAGCTATACAATTCCCATATGAGACTTAAAGATCTCTCAAGAGAGTCA
AATGCATCAAATTAATTGCTAATAATATGTCGTTATGACGTTTCAAGCTA
TGAGAAAGATGCGACAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACAGTTGT
CCTTTGCGGACAAAGCTAGATCCTCGATTGTTTTCTAAAACAATGGAAAG
ACAATGGTTCGCTCTCCACCGTTTTATTTGATGTTTATCAAGAGTTCTAT
GATAAATCCATGATATTGGTTTCGGAATGTTTCGAAGCAAGAAAACGAAG
CAGTTCCGTTCCGATAAAAAAGTGGAATACCGTTTCGATTAGACTGGCAC
GCCAGTCGGAAAAAATTTTGTCGGCGGCAAGGGCTGTTAATCAGCAGCCT
CTCACCAACTTTTGCTCGCTCTCCTACGCAGCTCCTATTCTAGCAAACGC
CCGCCGCCTTTATGTTTGCTAGTCTACGTTTCGATCTGTTCTGTTTGTAA
CGTCTTCTTTTTTGACATTTCGAATTTTGACACACTTGTTTCGGAACCGG
TTATGAACGGAACCGTAACGTCTGAACATGGACTAAGGCTTCCAAACTCT
TACTCAATTTTCTTAGGAAATCGCGAAAGTACTCACAAAATGGTGAAAAT
GAGCAAAATTTATTTAAAATCAATATCAGGCAAAAAACTAAATAAGCTAA
GAACATTTTATAAAAACACATTCCCTAGGACAATATGCAAAGTTTAAGTA
ATTTTTGGTACTACTTGAATAATATGTCCTCAAAATTCACGATGTAGTTT
TTCCTTATAATAAAGATAATGCTTTTATAATGTTTATTATGTCTATTCCT
TCTGCATCTTTCAGGTGATGGGCGGTTGGGGCGACGACGATGGTGTTGAA
GATGGGTGGACCGATGATTTCTAAAGTTAACTGTCTTATTTTCTTAGTAT
CTTCATGAATTTATATTATCTTATTATCTATAGTAGTAGACTGACTCTAA
TAGCGAGGTTAAGCAAGAAGCTATCTATTACGTACGGAATCTATTACGTG
AGTTTTTAGGCTGGATCCGAGGCGTTTTAGCCTGATTCCTAAAGCTTCAC
GGCATAGAAAAAAAAGTGGTTAAGCAAAAAGGCGATCTATGACGTATGAC
GTAATGTTTATTTTTCCGTATCTCACTTTTGGCCCCAACTTATAAAATTT
TATTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044836XLOC_044836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072212-exon-scaffold_71-1575043694:1154049..1154195TCONS_00072212-exon-scaffold_71-1575043694:1154049..1154195Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1153404..1153719TCONS_00072212-exon-scaffold_71-1575043694:1153404..1153719Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1152856..1152946TCONS_00072212-exon-scaffold_71-1575043694:1152856..1152946Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1152326..1152387TCONS_00072212-exon-scaffold_71-1575043694:1152326..1152387Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1152185..1152228TCONS_00072212-exon-scaffold_71-1575043694:1152185..1152228Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1150972..1151049TCONS_00072212-exon-scaffold_71-1575043694:1150972..1151049Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1150464..1150600TCONS_00072212-exon-scaffold_71-1575043694:1150464..1150600Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1149933..1149984TCONS_00072212-exon-scaffold_71-1575043694:1149933..1149984Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1149033..1149168TCONS_00072212-exon-scaffold_71-1575043694:1149033..1149168Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1148354..1148494TCONS_00072212-exon-scaffold_71-1575043694:1148354..1148494Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1147787..1147811TCONS_00072212-exon-scaffold_71-1575043694:1147787..1147811Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1147074..1147262TCONS_00072212-exon-scaffold_71-1575043694:1147074..1147262Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1146683..1146742TCONS_00072212-exon-scaffold_71-1575043694:1146683..1146742Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1144954..1145045TCONS_00072212-exon-scaffold_71-1575043694:1144954..1145045Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1143236..1143859TCONS_00072212-exon-scaffold_71-1575043694:1143236..1143859Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1575043694:1141237..1141581TCONS_00072212-exon-scaffold_71-1575043694:1141237..1141581Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1154049..1154195TCONS_00072212-exon-scaffold_71-1510915933:1154049..1154195Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1153404..1153719TCONS_00072212-exon-scaffold_71-1510915933:1153404..1153719Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1152856..1152946TCONS_00072212-exon-scaffold_71-1510915933:1152856..1152946Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1152326..1152387TCONS_00072212-exon-scaffold_71-1510915933:1152326..1152387Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1152185..1152228TCONS_00072212-exon-scaffold_71-1510915933:1152185..1152228Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1150972..1151049TCONS_00072212-exon-scaffold_71-1510915933:1150972..1151049Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1150464..1150600TCONS_00072212-exon-scaffold_71-1510915933:1150464..1150600Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1149933..1149984TCONS_00072212-exon-scaffold_71-1510915933:1149933..1149984Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1149033..1149168TCONS_00072212-exon-scaffold_71-1510915933:1149033..1149168Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1148354..1148494TCONS_00072212-exon-scaffold_71-1510915933:1148354..1148494Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1147787..1147811TCONS_00072212-exon-scaffold_71-1510915933:1147787..1147811Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1147074..1147262TCONS_00072212-exon-scaffold_71-1510915933:1147074..1147262Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1146683..1146742TCONS_00072212-exon-scaffold_71-1510915933:1146683..1146742Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1144954..1145045TCONS_00072212-exon-scaffold_71-1510915933:1144954..1145045Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1143236..1143859TCONS_00072212-exon-scaffold_71-1510915933:1143236..1143859Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1510915933:1141237..1141581TCONS_00072212-exon-scaffold_71-1510915933:1141237..1141581Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1154049..1154195TCONS_00072212-exon-scaffold_71-1491911889:1154049..1154195Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1153404..1153719TCONS_00072212-exon-scaffold_71-1491911889:1153404..1153719Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1152856..1152946TCONS_00072212-exon-scaffold_71-1491911889:1152856..1152946Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1152326..1152387TCONS_00072212-exon-scaffold_71-1491911889:1152326..1152387Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1152185..1152228TCONS_00072212-exon-scaffold_71-1491911889:1152185..1152228Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1150972..1151049TCONS_00072212-exon-scaffold_71-1491911889:1150972..1151049Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1150464..1150600TCONS_00072212-exon-scaffold_71-1491911889:1150464..1150600Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1149933..1149984TCONS_00072212-exon-scaffold_71-1491911889:1149933..1149984Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1149033..1149168TCONS_00072212-exon-scaffold_71-1491911889:1149033..1149168Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1148354..1148494TCONS_00072212-exon-scaffold_71-1491911889:1148354..1148494Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1147787..1147811TCONS_00072212-exon-scaffold_71-1491911889:1147787..1147811Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1147074..1147262TCONS_00072212-exon-scaffold_71-1491911889:1147074..1147262Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1146683..1146742TCONS_00072212-exon-scaffold_71-1491911889:1146683..1146742Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1144954..1145045TCONS_00072212-exon-scaffold_71-1491911889:1144954..1145045Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1143236..1143859TCONS_00072212-exon-scaffold_71-1491911889:1143236..1143859Clytia hemisphaericaexon
TCONS_00072212-exon-scaffold_71-1491911889:1141237..1141581TCONS_00072212-exon-scaffold_71-1491911889:1141237..1141581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1141237..1154195 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000636509	0	0.156682	0.753483	2.42193	1.31498	1.29343	0.876642	0.373737	0.0125657	0	0.000186674	0.000269529	1.81188	1.98756e-07	0	0.000160758	0.00277691	1.45958	1.50474	0.000432336	0.0362133	0.00179022	0	2.38759	1.72008	0	0	0	0
Blast
[Close]
BLAST of TCONS_00072212 vs. Swiss-Prot (Human)
Match: PACE1 (Protein-associating with the carboxyl-terminal domain of ezrin OS=Homo sapiens GN=SCYL3 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.854e-32
Identity = 91/315 (28.89%), Postives = 157/315 (49.84%), Query Frame = 2 
Query:  377 LCHNNINVSTVYVTKRGDWKLALFEHSSKI----------VQTARD--------------------SYSQDAIGYGELALSILEYLNDDQKPTI--KFMERLQQSYTEVNKSNLGSLKTLVNDPVFKFPYMELVQSLETITLKQNEEKLKFFRSLIKNIHGSPSLSVCRRCIPTLFTSTVLSDPTA-ECILDSLFASGNAETLSQSILP-LIDKEYFHEYCIPCILKLFELRDKAVRLILLQRLPLYIDCIEKNILKEQILPEVLAGLQDDDDLMVSATLRALSYFVLMIGGQAVVGSQGSKLFHNRLPDFSRVT 1219
            L HNN+ +S+V+V++ G WKL   E   K+          +Q+ RD                     +++DA  +G L  S+L  LN+     +   F + L  +          +L TL++   F+  ++E+V  L+++TLK  EEK +FF+ L+  +       +  R +P L    V ++P A +  L  L   G  +  +Q   P L+    F    IP +L+LFE+ ++ VR++LL  +  Y++   +  LK+ ILP+VL GL+D  D +V+ TL +L+  V ++G + VVG + +K+F    P F++ T
Sbjct:  120 LTHNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLL--GPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNT 432
The following BLAST results are available for this feature:
BLAST of TCONS_00072212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PACE11.854e-3228.89Protein-associating with the carboxyl-terminal dom... [more]
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