TCONS_00072202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072202
Unique NameTCONS_00072202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072202 ID=TCONS_00072202|Name=TCONS_00072202|organism=Clytia hemisphaerica|type=transcript|length=2388bp
aaacaacaacaacaacgtaGGGAGACGAAAAACCAAACAACATTCACCAA
ATATGAATTGTACCAATGGAACGACTCACTGGACAATTAAAGATTGTGTT
GATGTTAACACAGACATAGCGATCACTTTTTCCGTTAATCTGGATCGGGA
ATTCTTCTCTTGGGTTTTATTGCTTGCTGCTACTTTTACTGTAAGGAAAA
AATTACGTGCTTGAATAGTCCACAATGGTCCAGCTTTTTGTTCATCTTCG
TGGGCATTCTATCCTTTCTAAGCATGTGTCTAATCAAAGATGATCATGTT
TATCATATACTGGCTATATTTTTTTTATGGACATCAACAATTTATATAAT
TTTGGGCTGTTTAGCATTTTTTACCCAGCCGgaatatttcattaaaaagg
agAGTCACGATTCGCATCTGCTCCCATTTATTCTTGGAATAACCGGAGTT
GTTGTTTCACAGGAGCATTTGTATTTCATTGGTGCATTCTCTGATGGTGG
CAATATAAGGAAACGTACCTACTTTGCATCATCCGCTTgccaaaaattct
ttcaaatcatCGTCTACTATTTCATATTAACTGATTCTGTCCCAGACAAA
AAATCATTTCGCGGTGCATCATGGTACTACAAAGCTATTGCTTTaatcaa
tttcatattttggatAGAGTCAATCAAAGTGACCAAAGACCGCTAACAGG
AAAAGTACATGGAAAACATGTTTCATGAAGGTTTTTATACGATTTTTGCC
AGAACCTATACAGCTTTGATTGTTGACTATCGCTTGATTTGTTGTATCCT
GTTTGTGGAGCATGCTTTGGAGATTGACAAAATGATAGAACGCGGTGAGA
ATTATGAAAGAATAAGCGGTCTTGATCATATACGGGAAGAAGCATCAATC
AAGATAGTTCATCCATGGTTTCGAGACTATCAACGATTTACAACATCTAT
TAAGAGGTTGAAAGGTTCAGGAATCATAATCGGTTTAGTACTCGTATTGT
TACAGATTTTGAATGCTTTTGTTTACTTCAAGGAGGCAAGCGTTGTGGGT
CCTTGGGCAAACATTTTTGGATGTTTGGCTGCATGGTCCTTTTTAATTGC
TGGTGTTTGGTTGTTATTGGAGACTCGGTCAATCAAGGATGAAGATGGAG
AAAAGAGGGAAGAAAACGTGGGTATCCAATACCTTATGACATTAATGGGG
CTTGTCAGTGTCATGTTTTGGATTTGTAGCGCTGTGTCAACGTGGAAGTG
GTCAATTATGGCTAAATCAGGAGATGCAAAACGGTATCCATATTTGACAT
GGACAACGATCAAGATATTATGTTGAGGAGTTGATTGAAGAGGCAGATTA
CCAAACATTGACTCAGATATTGTTTGCAACTGGCGCACCAATGGGTATTG
GCTTCTCTTGCCATATTACACTGCATTTCTACACAATGTATTACAAGATG
GCAAAATGCCAACATGATTACACACGTGTAAATCAAAGTAGTAGATGTAG
AATTAACGATGAAGGGAATCCATTGTTGGACAATGATCGGTTTTCTCAAT
CCTACTCACAAATTTAGAGGATATGCGAATCTATCTGTAATTGAGACCCA
TAAAAAGATTTACCTTGAGGACTTAAACATACAcacctgtgtcacagacc
cgctgggaccccagccccactggaaaattggaaaacatTTCGTCCGCAGT
GGGNccctgtgtcacagacccgctgggactccagtcccactggaaaattt
ggaaaaaatttcgtcCACAGTGGGGAAATatcctggaatttcagcccact
gggaaattgactttgatttcatccccattcaaatttcaatgtcttaaaat
tgcacttcaaaaccattcccactggatGTTTTGACCTTGGAACAATATTT
GGAATAATAATTTCCaaccccattgggatttcaaaagaaacttttatccc
tgctgtgggaaaaagttccactggggctgtgatACAGGAATGTAGAAAAG
GATTTACCTTGAGGTCTTGTAGTTCAGTTGAAATTAAtgcattaaaaata
aaatattacataacattttgttcattttttgacaattttgcgGCAATTTT
GCCACCATTAAAGAGACTAGTTCCctgaaattccagccaaaattttcaaa
tttcagtctgttgattttttgttttggtaattttggaACCTTTGCTTTTT
ACTTGTTTTTGTACTCCTTCGAGGGACcttcgagggtgtgaaaaagagAC
CTTTATTGCTCACACATACTCACCGGGATACAGTCAcggttttaaaaata
attatcttcTTTGAGCCCCTCTTTGACTGGAAAATGAAGTTTCAGGGCTT
CTTTTCTCATCGTGGGAATACTCTCGACTATAACTTTA
Run BLAST on NCBI

protein sequence of TCONS_00072202-protein

>TCONS_00072202-protein ID=TCONS_00072202-protein|Name=TCONS_00072202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MENMFHEGFYTIFARTYTALIVDYRLICCILFVEHALEIDKMIERGENYE
RISGLDHIREEASIKIVHPWFRDYQRFTTSIKRLKGSGIIIGLVLVLLQI
LNAFVYFKEASVVGPWANIFGCLAAWSFLIAGVWLLLETRSIKDEDGEKR
EENVGIQYLMTLMGLVSVMFWICSAVSTWKWSIMAKSGDAKRYPYLTWTT
IKILC
Run BLAST on NCBI

transcript from alignment at scaffold_71:968056..971291-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072202 ID=TCONS_00072202|Name=TCONS_00072202|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at scaffold_71:968056..971291- (Clytia hemisphaerica)
AAACAACAACAACAACGTAGGGAGACGAAAAACCAAACAACATTCACCAA
ATATGAATTGTACCAATGGAACGACTCACTGGACAATTAAAGATTGTGTT
GATGTTAACACAGACATAGCGATCACTTTTTCCGTTAATCTGGATCGGGA
ATTCTTCTCTTGGGTTTTATTGCTTGCTGCTACTTTTACTGTAAGGAAAA
AATTACGTGCTTGAATAGTCCACAATGGTCCAGCTTTTTGTTCATCTTCG
TGGGCATTCTATCCTTTCTAAGCATGTGTCTAATCAAAGATGATCATGTT
TATCATATACTGGCTATATTTTTTTTATGGACATCAACAATTTATATAAT
TTTGGGCTGTTTAGCATTTTTTACCCAGCCGGAATATTTCATTAAAAAGG
AGAGTCACGATTCGCATCTGCTCCCATTTATTCTTGGAATAACCGGAGTT
GTTGTTTCACAGGAGCATTTGTATTTCATTGGTGCATTCTCTGATGGTGG
CAATATAAGGAAACGTACCTACTTTGCATCATCCGCTTGCCAAAAATTCT
TTCAAATCATCGTCTACTATTTCATATTAACTGATTCTGTCCCAGACAAA
AAATCATTTCGCGGTGCATCATGGTACTACAAAGCTATTGCTTTAATCAA
TTTCATATTTTGGATAGAGTCAATCAAAGTGACCAAAGACCGCTAACAGG
AAAAGTACATGGAAAACATGTTTCATGAAGGTTTTTATACGATTTTTGCC
AGAACCTATACAGCTTTGATTGTTGACTATCGCTTGATTTGTTGTATCCT
GTTTGTGGAGCATGCTTTGGAGATTGACAAAATGATAGAACGCGGTGAGA
ATTATGAAAGAATAAGCGGTCTTGATCATATACGGGAAGAAGCATCAATC
AAGATAGTTCATCCATGGTTTCGAGACTATCAACGATTTACAACATCTAT
TAAGAGGTTGAAAGGTTCAGGAATCATAATCGGTTTAGTACTCGTATTGT
TACAGATTTTGAATGCTTTTGTTTACTTCAAGGAGGCAAGCGTTGTGGGT
CCTTGGGCAAACATTTTTGGATGTTTGGCTGCATGGTCCTTTTTAATTGC
TGGTGTTTGGTTGTTATTGGAGGTATGCCGTTATGACAATGTGCTTTAAA
AAATTCTAGGTTAAGAAATTTTTGGAAATTTTAGATTTGCCTTCTATCTT
CATTTTCTTGAATTTCGGACAAACATAAATAAGGCTCTATTTTATAGTTG
AAAACGAACCCTTAGAATCCGTCGAATGGCTGCATAGTTTGAAACTAAAT
TTTGAGAATTTTACGGGGGAGCCTGCAAGTTAGGTCTTGGTTAATAGGTC
ATATAACATGTTTACCAAGTTGCCAAAATACTTCTGACATCCAACCCCCC
CAAAAATCAGTTAAATAATCGAATTTTAAAGTTGTATACAACATGATAAA
TTTTTCAAAAACCTTTTGGTAGAAAATATTCATTGACAATATTCAGCGTC
GGTCAACTATAATAGTCGGCAAAAGAAATGTCTGCTCTATAAAAGCTCAT
ATGACAACACACCTTTTCAACCGTAGCCACCAATCGCCGCGCAGGCATTT
TTTGTCCGTTTTACCATTCTAAGCTCGTAGCAATCCTTTTTTTACAATTT
TTTCTTTTGTCTTTAGGTGCGAAAAAAAGACTAGGACGGTTTTAGGGTGG
TAAAACGGACAAAAAATATACGCGCGGCAATTGTCAGCTACGGTCGAAGA
GGTGTATAGTATAATTATTGATTACTTTTTATTGTATCTTTATGCAGACT
CGGTCAATCAAGGATGAAGATGGAGAAAAGAGGGAAGAAAACGTGGGTAT
CCAATACCTTATGACATTAATGGGGCTTGTCAGTGTCATGTTTTGGATTT
GTAGCGCTGTGTCAACGTGGAAGTGGTCAATTATGGCTAAATCAGGAGAT
GCAAAACGGTATCCATATTTGACATGGACAACGATCAAGGTTTGTCATTT
TCCAATCATCCAAATCTTCCAAATCTATATCTTCCAGAAAGTTCATGTGA
CGTATGCCAACAAGGAAACTTTTCTGAAGAGAAAAATACTATACTTTTTG
ATTCCATTTCTAATGCTCAGTTCGCTGGCTTTACTTATTAATTTGATTAT
CTGTGAATACAGATATTATGTTGAGGAGTTGATTGAAGAGGCAGATTACC
AAACATTGACTCAGATATTGTTTGCAACTGGCGCACCAATGGGTATTGGC
TTCTCTTGCCATATTACACTGCATTTCTACACAATGTATTACAAGATGGC
AAAATGCCAACATGATTACACACGTGTAAATCAAAGTAGTAGATGTAGAA
TTAACGATGAAGGGAATCCATTGTTGGACAATGATCGGTTTTCTCAATCC
TACTCACAAATTTAGAGGATATGCGAATCTATCTGTAATTGAGACCCATA
AAAAGATTTACCTTGAGGACTTAAACATACACACCTGTGTCACAGACCCG
CTGGGACCCCAGCCCCACTGGAAAATTGGAAAACATTTCGTCCGCAGTGG
GNCCCTGTGTCACAGACCCGCTGGGACTCCAGTCCCACTGGAAAATTTGG
AAAAAATTTCGTCCACAGTGGGGAAATATCCTGGAATTTCAGCCCACTGG
GAAATTGACTTTGATTTCATCCCCATTCAAATTTCAATGTCTTAAAATTG
CACTTCAAAACCATTCCCACTGGATGTTTTGACCTTGGAACAATATTTGG
AATAATAATTTCCAACCCCATTGGGATTTCAAAAGAAACTTTTATCCCTG
CTGTGGGAAAAAGTTCCACTGGGGCTGTGATACAGGAATGTAGAAAAGGA
TTTACCTTGAGGTCTTGTAGTTCAGTTGAAATTAATGCATTAAAAATAAA
ATATTACATAACATTTTGTTCATTTTTTGACAATTTTGCGGCAATTTTGC
CACCATTAAAGAGACTAGTTCCCTGAAATTCCAGCCAAAATTTTCAAATT
TCAGTCTGTTGATTTTTTGTTTTGGTAATTTTGGAACCTTTGCTTTTTAC
TTGTTTTTGTACTCCTTCGAGGGACCTTCGAGGGTGTGAAAAAGAGACCT
TTATTGCTCACACATACTCACCGGGATACAGTCACGGTTTTAAAAATAAT
TATCTTCTTTGAGCCCCTCTTTGACTGGAAAATGAAGTTTCAGGGCTTCT
TTTCTCATCGTGGGAATACTCTCGACTATAACTTTA

Coding sequence (CDS) from alignment at scaffold_71:968056..971291-

>TCONS_00072202 ID=TCONS_00072202|Name=TCONS_00072202|organism=Clytia hemisphaerica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_71:968056..971291- (Clytia hemisphaerica)
ATATTATGTTGAACTCGGTCAATCAAGGATGAAGATGGAGAAAAGAGGGA
AGAAAACGTGGGTATCCAATACCTTATGACATTAATGGGGCTTGTCAGTG
TCATGTTTTGGATTTGTAGCGCTGTGTCAACGTGGAAGTGGTCAATTATG
GCTAAATCAGGAGATGCAAAACGGTATCCATATTTGACATGGACAACGAT
CAAGATGGAAAACATGTTTCATGAAGGTTTTTATACGATTTTTGCCAGAA
CCTATACAGCTTTGATTGTTGACTATCGCTTGATTTGTTGTATCCTGTTT
GTGGAGCATGCTTTGGAGATTGACAAAATGATAGAACGCGGTGAGAATTA
TGAAAGAATAAGCGGTCTTGATCATATACGGGAAGAAGCATCAATCAAGA
TAGTTCATCCATGGTTTCGAGACTATCAACGATTTACAACATCTATTAAG
AGGTTGAAAGGTTCAGGAATCATAATCGGTTTAGTACTCGTATTGTTACA
GATTTTGAATGCTTTTGTTTACTTCAAGGAGGCAAGCGTTGTGGGTCCTT
GGGCAAACATTTTTGGATGTTTGGCTGCATGGTCCTTTTTAATTGCTGGT
GTTTGGTTGTTATTGGAGATATTATGTTGAACTCGGTCAATCAAGGATGA
AGATGGAGAAAAGAGGGAAGAAAACGTGGGTATCCAATACCTTATGACAT
TAATGGGGCTTGTCAGTGTCATGTTTTGGATTTGTAGCGCTGTGTCAACG
TGGAAGTGGTCAATTATGGCTAAATCAGGAGATGCAAAACGGTATCCATA
TTTGACATGGACAACGATCAAGATGGAAAACATGTTTCATGAAGGTTTTT
ATACGATTTTTGCCAGAACCTATACAGCTTTGATTGTTGACTATCGCTTG
ATTTGTTGTATCCTGTTTGTGGAGCATGCTTTGGAGATTGACAAAATGAT
AGAACGCGGTGAGAATTATGAAAGAATAAGCGGTCTTGATCATATACGGG
AAGAAGCATCAATCAAGATAGTTCATCCATGGTTTCGAGACTATCAACGA
TTTACAACATCTATTAAGAGGTTGAAAGGTTCAGGAATCATAATCGGTTT
AGTACTCGTATTGTTACAGATTTTGAATGCTTTTGTTTACTTCAAGGAGG
CAAGCGTTGTGGGTCCTTGGGCAAACATTTTTGGATGTTTGGCTGCATGG
TCCTTTTTAATTGCTGGTGTTTGGTTGTTATTGGAGATATTATGTTGAAC
TCGGTCAATCAAGGATGAAGATGGAGAAAAGAGGGAAGAAAACGTGGGTA
TCCAATACCTTATGACATTAATGGGGCTTGTCAGTGTCATGTTTTGGATT
TGTAGCGCTGTGTCAACGTGGAAGTGGTCAATTATGGCTAAATCAGGAGA
TGCAAAACGGTATCCATATTTGACATGGACAACGATCAAGATGGAAAACA
TGTTTCATGAAGGTTTTTATACGATTTTTGCCAGAACCTATACAGCTTTG
ATTGTTGACTATCGCTTGATTTGTTGTATCCTGTTTGTGGAGCATGCTTT
GGAGATTGACAAAATGATAGAACGCGGTGAGAATTATGAAAGAATAAGCG
GTCTTGATCATATACGGGAAGAAGCATCAATCAAGATAGTTCATCCATGG
TTTCGAGACTATCAACGATTTACAACATCTATTAAGAGGTTGAAAGGTTC
AGGAATCATAATCGGTTTAGTACTCGTATTGTTACAGATTTTGAATGCTT
TTGTTTACTTCAAGGAGGCAAGCGTTGTGGGTCCTTGGGCAAACATTTTT
GGATGTTTGGCTGCATGGTCCTTTTTAATTGCTGGTGTTTGGTTGTTATT
GGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044828XLOC_044828Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072202-proteinTCONS_00072202-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072202-exon-scaffold_71-1575043694:970170..971291TCONS_00072202-exon-scaffold_71-1575043694:970170..971291Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1575043694:969303..969494TCONS_00072202-exon-scaffold_71-1575043694:969303..969494Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1575043694:968056..969129TCONS_00072202-exon-scaffold_71-1575043694:968056..969129Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1510915933:970170..971291TCONS_00072202-exon-scaffold_71-1510915933:970170..971291Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1510915933:969303..969494TCONS_00072202-exon-scaffold_71-1510915933:969303..969494Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1510915933:968056..969129TCONS_00072202-exon-scaffold_71-1510915933:968056..969129Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1491911889:970170..971291TCONS_00072202-exon-scaffold_71-1491911889:970170..971291Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1491911889:969303..969494TCONS_00072202-exon-scaffold_71-1491911889:969303..969494Clytia hemisphaericaexon
TCONS_00072202-exon-scaffold_71-1491911889:968056..969129TCONS_00072202-exon-scaffold_71-1491911889:968056..969129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:968056..971291 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.669146	0.652686	0.315903	0.301392	0.0440532	0.0525431	0.106798	0.157156	0.36018	1.94709	0.529347	0.504786	4.37932	3.3722	13.3328	8.14124	1.38781	1.28253	4.4421	3.4154	0.177885	0.141643	1.05689	1.70216	2.38145	1.41637	1.97648	2.24083	0.867426	0.405338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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