|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072199 ID=TCONS_00072199|Name=TCONS_00072199|organism=Clytia hemisphaerica|type=transcript|length=991bp AACTAATCTAGAAGAATCAACAACCAAAGTTTGCTCAAAacataatataa taaaaatgaagTCACTCATTGTCTTAGCAGGAATCATTGCAGTATGTAGC GCATTGACAGCACCAGACGTCACTGGAACCACACCACCAGCTGTCCCATG TCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTCA ACCCAACTAACTACAAACTCGTCAAGAACTACTTCGTCCAATGTCTTGGA GGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCCC ACGATGCAACCAATGTTTGTATGGTTCAAATGATGAATGTGTCACCACTC TTCCATTCCAACCAGCCACCACTTTCCAATGTCCAGACAAATGTCCCCAC CGTGGACCGAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGACA ATACGTTGCATGCTGGGAAGGAGTAACTGTTGGATGTGTTGCTTGTCCAG GAAAATTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTCGAAGGAAAA TACATCACTGAACCAACAAAGAACTAAGAAGACACTCTTATTGGATGAAA AGCAATTTTATTATCTAGGATTATTTGCAAAACTGAAAACTTAACATTCT TTTTATTCGCCAGTTGCTCTAATTTAAGCATTTATACTAAAGACATACCT TAAAATTAGTTGCTCCAATTCAAAATATACCCCCTTCTCTGCACTTGTCT GCTTGCAAAAATATTATCACTTTTTATACAAATATTATACTTTAATGATA TTATTTATTAGGTCTTATCTTTTGTCATCTGTTTCAACTATACCATTCGA TTGGAAAGAAATACACTTTTAGATTCATTCAACTTGCGATTTGTACTTTT ATTTCAaggaatttcttcttttttaatttaattttgtgaCTCTGTTACAG ACTTTAATTGCTTATTCAATTTAGAGTGTCTAGGCCATTCC Run BLAST on NCBI protein sequence of TCONS_00072199-protein >TCONS_00072199-protein ID=TCONS_00072199-protein|Name=TCONS_00072199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
TNLEESTTKVCSKHNIIKMKSLIVLAGIIAVCSALTAPDVTGTTPPAVPC PNTLCKGKADGNFAYVNPTNYKLVKNYFVQCLGGNAYCQACWPLSLEFSP RCNQCLYGSNDECVTTLPFQPATTFQCPDKCPHRGPKFTGNIADPAEKRQ YVACWEGVTVGCVACPGKLEFNESENACLFEGKYITEPTKN Run BLAST on NCBI transcript from alignment at scaffold_71:898754..899958- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072199 ID=TCONS_00072199|Name=TCONS_00072199|organism=Clytia hemisphaerica|type=transcript|length=1205bp|location=Sequence derived from alignment at scaffold_71:898754..899958- (Clytia hemisphaerica) AACTAATCTAGAAGAATCAACAACCAAAGTTTGCTCAAAACATAATATAA
TAAAAATGAAGTCACTCATTGTCTTAGCAGGAATCATTGCAGGTAGGTTC
CATTAAGCAAAATATGAGAATTTTCTGAATTTTGTGCGCTAGTGTTACTG
TCAAATTTTATATAAAAGACTCTTCGTTGAAATGTTAACTGTTTTGCTAA
ACAGGTATATGTAGGGTATATTGCGCTACTCAAATGTAGAATTTAGCCCA
TTTAAAATATGCATTACGTATTCCAATAATTTTAATTTAATCTCTTTTTA
TTCCAGTATGTAGCGCATTGACAGCACCAGACGTCACTGGAACCACACCA
CCAGCTGTCCCATGTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAA
CTTTGCTTATGTCAACCCAACTAACTACAAACTCGTCAAGAACTACTTCG
TCCAATGTCTTGGAGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGT
TTGGAATTCAGCCCACGATGCAACCAATGTTTGTATGGTTCAAATGATGA
ATGTGTCACCACTCTTCCATTCCAACCAGCCACCACTTTCCAATGTCCAG
ACAAATGTCCCCACCGTGGACCGAAATTCACCGGAAACATTGCTGACCCA
GCTGAAAAACGACAATACGTTGCATGCTGGGAAGGAGTAACTGTTGGATG
TGTTGCTTGTCCAGGAAAATTGGAATTCAACGAAAGCGAAAATGCTTGCT
TGTTCGAAGGAAAATACATCACTGAACCAACAAAGAACTAAGAAGACACT
CTTATTGGATGAAAAGCAATTTTATTATCTAGGATTATTTGCAAAACTGA
AAACTTAACATTCTTTTTATTCGCCAGTTGCTCTAATTTAAGCATTTATA
CTAAAGACATACCTTAAAATTAGTTGCTCCAATTCAAAATATACCCCCTT
CTCTGCACTTGTCTGCTTGCAAAAATATTATCACTTTTTATACAAATATT
ATACTTTAATGATATTATTTATTAGGTCTTATCTTTTGTCATCTGTTTCA
ACTATACCATTCGATTGGAAAGAAATACACTTTTAGATTCATTCAACTTG
CGATTTGTACTTTTATTTCAAGGAATTTCTTCTTTTTTAATTTAATTTTG
TGACTCTGTTACAGACTTTAATTGCTTATTCAATTTAGAGTGTCTAGGCC
ATTCC Coding sequence (CDS) from alignment at scaffold_71:898754..899958- >TCONS_00072199 ID=TCONS_00072199|Name=TCONS_00072199|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_71:898754..899958- (Clytia hemisphaerica) TATGTAGCGCATTGACAGCACCAGACGTCACTGGAACCACACCACCAGCT GTCCCATGTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGC TTATGTCAACCCAACTAACTACAAACTCGTCAAGAACTACTTCGTCCAAT GTCTTGGAGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAA TTCAGCCCACGATGCAACCAATGTTTGTATGGTTCAAATGATGAATGTGT CACCACTCTTCCATTCCAACCAGCCACCACTTTCCAATGTCCAGACAAAT GTCCCCACCGTGGACCGAAATTCACCGGAAACATTGCTGACCCAGCTGAA AAACGACAATACGTTGCATGCTGGGAAGGAGTAACTGTTGGATGTGTTGC TTGTCCAGGAAAATTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTCG AAGGAAAATACATCACTGAACCAACAAAGAACTAAACTAATCTAGAAGAA TCAACAACCAAAGTTTGCTCAAAACATAATATAATAAAAATGAAGTCACT CATTGTCTTAGCAGGAATCATTGCAGTATGTAGCGCATTGACAGCACCAG ACGTCACTGGAACCACACCACCAGCTGTCCCATGTCCAAACACTTTATGT AAAGGAAAAGCTGATGGAAACTTTGCTTATGTCAACCCAACTAACTACAA ACTCGTCAAGAACTACTTCGTCCAATGTCTTGGAGGAAATGCTTATTGTC AAGCATGCTGGCCACTCAGTTTGGAATTCAGCCCACGATGCAACCAATGT TTGTATGGTTCAAATGATGAATGTGTCACCACTCTTCCATTCCAACCAGC CACCACTTTCCAATGTCCAGACAAATGTCCCCACCGTGGACCGAAATTCA CCGGAAACATTGCTGACCCAGCTGAAAAACGACAATACGTTGCATGCTGG GAAGGAGTAACTGTTGGATGTGTTGCTTGTCCAGGAAAATTGGAATTCAA CGAAAGCGAAAATGCTTGCTTGTTCGAAGGAAAATACATCACTGAACCAA CAAAGAACTAAACTAATCTAGAAGAATCAACAACCAAAGTTTGCTCAAAA CATAATATAATAAAAATGAAGTCACTCATTGTCTTAGCAGGAATCATTGC AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072199-exon-scaffold_71-1575043694:899867..899958 | TCONS_00072199-exon-scaffold_71-1575043694:899867..899958 | Clytia hemisphaerica | exon |
TCONS_00072199-exon-scaffold_71-1575043694:898754..899652 | TCONS_00072199-exon-scaffold_71-1575043694:898754..899652 | Clytia hemisphaerica | exon |
TCONS_00072199-exon-scaffold_71-1510915933:899867..899958 | TCONS_00072199-exon-scaffold_71-1510915933:899867..899958 | Clytia hemisphaerica | exon |
TCONS_00072199-exon-scaffold_71-1510915933:898754..899652 | TCONS_00072199-exon-scaffold_71-1510915933:898754..899652 | Clytia hemisphaerica | exon |
TCONS_00072199-exon-scaffold_71-1491911889:899867..899958 | TCONS_00072199-exon-scaffold_71-1491911889:899867..899958 | Clytia hemisphaerica | exon |
TCONS_00072199-exon-scaffold_71-1491911889:898754..899652 | TCONS_00072199-exon-scaffold_71-1491911889:898754..899652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_71 | supercontig | scaffold_71:898754..899958 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
Term | Definition |
GO:0005576 | extracellular region |
Vocabulary: Biological Process
Term | Definition |
GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006030 |
chitin metabolic process |
cellular_component |
GO:0005576 |
extracellular region |
molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
|