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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072198 ID=TCONS_00072198|Name=TCONS_00072198|organism=Clytia hemisphaerica|type=transcript|length=3225bpRun BLAST on NCBI protein sequence of TCONS_00072198-protein >TCONS_00072198-protein ID=TCONS_00072198-protein|Name=TCONS_00072198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=661bp MAATIMNFDVFNKLQNAPSLYTMQSNEPAIRIYEICDSTESNPKPEKNHDRun BLAST on NCBI transcript from alignment at scaffold_71:884764..898012- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072198 ID=TCONS_00072198|Name=TCONS_00072198|organism=Clytia hemisphaerica|type=transcript|length=13249bp|location=Sequence derived from alignment at scaffold_71:884764..898012- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:884764..898012- >TCONS_00072198 ID=TCONS_00072198|Name=TCONS_00072198|organism=Clytia hemisphaerica|type=CDS|length=23832bp|location=Sequence derived from alignment at scaffold_71:884764..898012- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072198 vs. Swiss-Prot (Human)
Match: LRC56 (Leucine-rich repeat-containing protein 56 OS=Homo sapiens GN=LRRC56 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 3.716e-45 Identity = 124/416 (29.81%), Postives = 197/416 (47.36%), Query Frame = 3
Query: 243 AIRIYEICDSTESNPKPEKNH---------DLMLGEFVTQQNLREITGTPDLSQVEELKLKVDTNETSIGNIGTSLGSMVPGLKRLNLSNSYVTSIRDLGTSFSNLTMIWLCRCSLVELDGISSLSSMKELFLAFNDISDLSPLSMLDTLEVLDLEANNIDDITQVEFLSLCSDLINLTMKGNPIEVKPTPESQKADLKYYNYSDAIITCLPMLKILDDEPLLVERVDGQEVKRVNPRKVNRDEGAFENDLKLIXXXXXXXXXXXXXXXXXDIDQSVXXXXXXXXXXXXXKSPEKKITRAIVSPEDRILSSAIKKDTEKESEPMKSTSEVTNFSSDLTSGNVMCGNPFAALRRRKRQTTPEDKPPQKEEPVTLVTKSKSDTSANIFKAEHSYLSAEETNVGKKED--VFEELRQWR 1457
++R+ E+ NP P+ + ++ E+++ L+ + DL V L++ VDT E S+GN G L P L +L L+ S++ S+RDLGTS +L ++WL RC L +LDGI+SL ++KEL+ ++N+ISDLSPL +L+ LEVLDLE N+++D+ QV +L LC L LT++GN + ++P P + YNY + +P L++LD+ V P ++++D A + +K D + S+ T+ + P + R PE +LS + P +TS +T+ +G V+CGNP LR R+ Q +E P L D +A+ S E + D LR WR
Sbjct: 17 SVRVRELSWQGLHNPCPQSKGPGSQRDRLGEQLVEEYLSPARLQALARVDDLRLVRTLEMCVDTREGSLGNFGVHL----PNLDQLKLNGSHLGSLRDLGTSLGHLQVLWLARCGLADLDGIASLPALKELYASYNNISDLSPLCLLEQLEVLDLEGNSVEDLGQVRYLQLCPRLAMLTLEGNLVCLQPAPGPTNKVPRGYNYRAEVRKLIPQLQVLDE-------VPAAHTGPPAPPRLSQDWLAVKEAIKKGNGLPPLDCPRGAPIRRLDPELSL----PETQSRASRPWPFSLLVRGGPLPEG-LLSEDLA--------PEDNTSSLTH-----GAGQVLCGNPTKGLRERRHQCQ------AREPPEQLPQHRPGDPAAST--------STPEPDPADSSDFLALAGLRAWR 389 The following BLAST results are available for this feature:
BLAST of TCONS_00072198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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