TCONS_00072196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072196
Unique NameTCONS_00072196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072196 ID=TCONS_00072196|Name=TCONS_00072196|organism=Clytia hemisphaerica|type=transcript|length=3104bp
ATCGGCGCCTCATTCGACTAAACAAAATGGAGGACGAAAACTGGATGCGA
TTACCCAAAATCTTTAGAATTATTAATTGATctttaacttttgatttttg
atcTCGTTGAATATTGGGTAATTCAATAATGTCCTGAATGGCTGCAACTA
TAATGAATTTTGATGTATTTAACAAATTACAAAATGCACCATCGTTGTAC
ACAATGCAATCAAATGAACCTGCTATACGTATTTACGAAATTTGTGATAG
CACAGAATCCAACCCAAAACCAGAGAAAAATCATGATTTGATGCTTGGAG
AATTTGTAACCCAACAAAATCTGGTTCAATGGTTCCAGGTTTGAAAAGGT
TGAACCTGAGCAACAGCTATGTAACTTCTATAAGGGATCTTGGTACAAGT
TTTAGCAATTTGACGATGATCTGGTTATGCAGGTGTTCTTTGGTTGAACT
TGACGGGATAAGCTCACTGAGCTCGATGAAGGAATTGTTTTTGGCATTCA
ACGATATTTCTGATTTAAGCCCATTGAGCATGCTTGATACTTTGGAAGTA
CTCGACTTAGAAGCCAATAACATCGACGATATTACCCAAGTGGAGTTTCT
TTCCCTGTGCAGTGATCTGATCAACCTGACGATGAAAGGCAATCCAATTG
AAGTCAAACCAACTCCTGAATCACAGAAAGCTGACTTGAAATATTATAAT
TACTCAGATGCAATCATCACTTGTTTACCGATGTTAAAAATCTTGGATGA
CGAACCACTATTGGTTGAACGAGTTGATGGCCAAGAAGTGAAACGTGTCA
ATCCAAGGAAAGTGAATAGGGACGAAGGTGCATTTGAGAATGACTTGAAG
CTGATTGAGGTCAGTTTAAAGTCATTAGAGACTGAAGAGCTTGTTGAGGA
GAATGAAGATATCGATCAAAGTGTAGCACGGCCGCGGACAGCAACACGCC
GCTCACGAACGGCGAAATCACCAGAAAAGAAAATCACACGCGCAATTGTT
TCACCTGAAGATCGTATTTTATCGTCAGCAATCAAAAAGGATACTGAAAA
GGAGTCTGAACCCATGAAATCTACATCTGAAGTGACGAATTTTAGTAGTG
ATTTAACTTCAGGTAATGTTATGTGTGGGAATCCATTTGCGGCACTCCGT
CGCCGAAAACGTCAAACGACTCCTGAGGATAAACCACCTCAAAAAGAGGA
GCCAGTAACCTTGGTTACGAAGAGTAAAAGTGACACCAGCGCTAATATAT
TTAAAGCAGAACATTCTTATTTGTCGGCTGAGGAAACGAATGTGGGGAAA
AAGGAAGATGTGTTTGAAGAATTGAGACAATGGAGGCTGAAGAATCAATC
ATTGTTTGATAGTATGGCAACGACTAAGATCAAATCTAACACATCAAGAT
CCACACGTGAGCAAACCACATCACCATCGAAAGCTGTGGACACTACAGCT
TCTGGAGGGGATGGAGATGTTTCACCAAGACGAAAACAACCAACACCGTT
GAAGCCTCTATCTCCTCTACGATCGTCTATTGATAGCTCAATGTTTAAGC
GCCGTACATCACCGCAGAAACCAGCTTTTTCCCCGGCACCACCCTCCCTT
CCTCGGAAAAATACCACCCCAGGGCGTACAAGGCGTTCCCTACAGACTAG
TCCTCCGAAAGCTGTTTTACCAAATATTGGTGATCGGCCTCACACTGTAG
GCGGAACAAGGACAGAAATATTCCTTACAGATGTTTCGTATCCAAATCAG
TTGTCAGCGAGAGACGGCAGTGACATACAGCAAACTCACGTGACATTAAA
TCAAAGGACAGACATCAACGCCAACATACGTAGCAAGAGTCATCCTGTGC
AGAACCAAAGGAAAACTCCTTCGCCGCCTCTATCGCCTTTAAACAGACCA
ATGACCGCCCGGGCGGCTTTACAATCGCTTCANCCGCCTCTATCGCCTTC
AAACAGACCAATGACCGCCCGGGCGGCTTTACAATCGCTTCAAAGACCCT
TCTCTAGGACTAATGATAGGTGAAATTGGGTTTCAAATAAACTCTTATAC
ACATATATGTGAATATCTCGTCTCAAGTGTTGGTGTCTTAAGACTGTTTA
AGCATATGATAATCTAGAGAACTCAAGGACTTCTGTTTATCGAGAGATAC
TCTGTCGTACAAGTGACAAGAACACAGTCAACAAAGATATATCTCAAAGA
ACAGACCATCAAAAAGAGTCTTGTCATTGGTTTGTTATGATTTATAAGAC
GCTACTTTTAGTATGTAGAATGTTATGTCGTGACCAAATTTCGGTTCTTG
TGGGCTTCACGTTATATGGGAGCTCTATAACCGTTCGTTActgtttgtta
ttatttttttggatcTATTTGTTCGTAACATTTGATATTTGATATCGCAA
CTTGGTTCTTCGAGTATTTGTGAGCGGTTGAGtgtttttttatatctttt
tcgATTCTTTCCGAATGATTTTGAACTaggaccttttcataaattgcgtc
acgaacatcacttgccttgtattcaaacaatttccatggtgatcataTCC
CTTCAGACTGATTTTATGAATAGAAACTAGTTGTAATAAATTCCGCTTGG
AGTTAATCACCAcgacaataatttcaaaacgaggcaagtgatgttcgtga
cgtaatttatgaaaaggtctattctcaaTCACCGCTAATGAGAACATCTT
GCTGTTCCGATAAGTTAGCGTTCACGTTAAATTCAAATTAACAATAGTTT
TCAACCATAGTTATAAGTCTCTGGGTAACAAGTAAACTAAGTATCCGAAT
AAATGTTTTCCTTGACAGCTTATGACCAGCCCCGCGGGACGTTATTCAGT
TTGAATTTTGCAATGCGACTTCCCATGCGTTTGGTGCATTATGTAATAGG
TATGTTCAATTTTCTTGGAAACCGTCTATAATAATTAACATAGTTTCTAG
GGTTAactctgtttttttttagtttgaaagTTCCATTTAATATTTATGCA
TgtaaataagagaaaaatactAATTAAAGTTTATTGCTTAATTAAGgtaa
tatttctattttttcacgatttttaaacaaaagattaCCATTACAATTCA
ATAC
Run BLAST on NCBI

transcript from alignment at scaffold_71:884764..897991-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072196 ID=TCONS_00072196|Name=TCONS_00072196|organism=Clytia hemisphaerica|type=transcript|length=13228bp|location=Sequence derived from alignment at scaffold_71:884764..897991- (Clytia hemisphaerica)
ATCGGCGCCTCATTCGACTAAACAAAATGGAGGACGAAAACTGGATGCGA
TTACCCAAAATCTTTAGAATTATTAATTGATCTTTAACTTTTGATTTTTG
ATCTCGTTGAATATTGGGTAATTCAATGTATCAAGTATAAATTCCCTTGC
CTTGGTCTGAGTTGTTTGAAAAGTATTTAAAGATACAGTTTAAATTCCAG
GAACAAAATATCCTTCTTCATCGTTCTCCTGTTTTTTTTTTTCTGCTCTG
CTGTTTTTTTATTGGGCTCTTCCAGTTAAAGGGACCCCTTACTTGTTTGT
GATCTTTAGGAAATCAAACTATATTGGTCCAAAAACCCCTAACAACATAT
TCAAAGAAAATAAGAATAGCTGCTAGTTCCTGATATCGAAAAATTCCTCT
GAAAACAACAGAAATGGTGTCTACAACTACAGTATATACTCTCGGGTGCC
TAATAAACGTACATGTACGTTTATTTTTTTCCTATCAAATTTCCCGCCTG
TACGCACCTTATTGGGAACTGTACGTTTATTTATTCTGAAGAATTTTCCC
GCCTGTACGTTTATTCCCTCCTGTACGTTTATTTACTTTCACCCAATATC
GCCCAATTCATACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTAATAAGATATGTTGAAAGGCGGTTA
ATTACATTCGAACGTATCGTGGGAGATTTCGAGTGTTACGCGAGTTAATT
CGAACGTTTTGCTTATTTAGTACTTGTCATACATTGATCTATAAGATACA
TGTACTTTTAAGTCAGTCGTTTCGATCTAGATGTTCTACTTTTGAAAAAT
AGGTAGATTATTCCCTGTACGTGTATTTCAGCCTGTACGTTTATTTATTT
TAGCTCTGATTTCTCGCCTGTACGTTTATTTCAGCCTGTACGTTTATTAA
TTCCAATTTTATTCTCTCCCCTGTACGTTTATTTTGGTCTGTACGTTTAT
TAGGCACCCGAGAGTATGCACACAAGCACTTAAGCTAAAGCCCCGCAAAA
GCGGGACAAAAATCAGTTTTTTGAAGTTTTCCAAAAAACGCCACATAGAA
GATTTTTCAAATTTACCGTGAAGTCAGGTAATTTGCATCAGTCTCAGTGA
AGGGAAACTTGCATAGCCATCAAATGACTGACCAATCAGCAGCAAAATTT
CAAAACAAATGAACTATGCAGCTCCGCCCGCAGCTCTACTCTACCATTTT
TGTTTTGATTTAACTTTGTATTTTAATGACCAGCCAGGTCATTCATTTGA
GGGCCCTCCACTTTTACAAGTTACCCGACTTCACGGTAGTACCGTCAACT
GCTCTAACTTGAGACGATTCTGGTCGAAACATGGGACTGTTTGAATCTGG
CCTGTATTTTCACTTACTGTTAAATCTCTTTGACAATAAATTTGTTTTGA
TAACTCCACCAAGTTTATCAATGATACTTCTTCCTTCCTCTTAGAGTGCA
CAGACACTCGCGTGTGTTCCACTACAGATTTTTTTCATATTTCGATTTAA
AAGCCTACTCGGTGCGAAAGAGAAATCATGTATTTTTTGATACGCCGTTC
TTTAACTCAAATCAAATTACTTTGGAGGTTCGGTCAAATGATGGCCGAAT
TGCTGTCCCATGTTTTTACAGATAGTCCCAAGTTAGAGCAGTTACGGTAT
GTGAATAGAGCAGTAAAAAATACAACTTTTCTCAGGGGGGGGGAGGCAAG
CAGTTAGTACACGACACCCATGACACTTAGTACCGTGGTGGGTCCATTTT
TCAAATTTTCAAAATGCAGTTAGTACACCAGTGTACTAACTGCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAATGTTTCTGGAAAGTCAT
TATTGTCACTTTAACTAGGTTAGAAACTGGTTAAAACTACTTTTTTCCTC
AGTTTCATCGAGAGATATGATTATACTTTTATACAAAAAAGGAAAAACTG
GGAAAATGACTCTTTTTGTGTGTTTTTGTCTCGTTATTCATCAATTTTCC
CCCACCAGCCCCCACTGCGGTTGACCTACTCCATAATTTGTTATATTTTT
ATTTGTTTGAAAGTAGTTAGTGCATAGTGGTAAAAACCTGGTAAAGACAG
GTAAAAACGTAAAAATACATAAAACCTCCCTGGGGTGTGAAATTCACCTG
GAATGCACCGTAGAGAGCCGGATCCTTATTTTGGGGGGTGGTATATATAT
TGAGCAAGGTCAAAGACAGTTAGTACACGGTGTACTAAGTGACAGGGGGT
GGTGGTGGGGTACAGATTTTTCCAAAAATCAGTTAGTACACATAGTGTTC
TGTTCTAACTGCTTGCCCCCCCTGCTTTTCTATTTTTCCGTTTTTTTTGC
AAAAGTTCTAGGGATGCAAATAAAGGTATAATGATAATTAAATACTATCC
ACTCTGATGATCCACAGCACTATCGTAAAGCTAGAATCGCTTCGCATACT
CTTTGCTTGAGAGACGGATTAAGTTTTTCACCCATGCAGGAGCTTGCGGG
CGTTCTGCGAGCGTTCTCAGCTTAATCCTTGGACCGCGCTAAATATGATA
GACTGTAGCTGTGATAGATCATTTGGATGGAAGTTGTTGGAATGTTTACA
AGGCTCTTGACAGAAAACCCTTTGTTTTATTGTCAATGATGACAGTGCCG
TTATTAATTTTGTTCAGTGAGGCTGGAACTTCGATTTTTGAAGATTACAA
TTTTACCAGCTTTTTAGCGATTTTTGCCTCGCTAACCCAAATCTTGCAAT
CACTTTACATTTAGGAAGATCAAAATTAGAGTTTTTCAGCGTTCCGAAAA
AAATGCAAAGCAGAAATTTTTTCATCTTCACAGGATCAATTGTCAACAAC
AAAATACATCTTTTGGTCTTTGGGTTTGTTTCTGATGTTTTTTCTTCAAA
GAATATCAATCACTTTCCTTTTTCCCTTGAGATGAGGTGGCAATCTTGCA
CTGAGGGTGCTACTTAGTTTCCGCCCTATTTTGCGCCCCGATAGAATGAT
CCAAATATGGGGGTATTCCATGATAAACTAATGTGGTTCTGTAAGTGTTA
ATTTTCCTAAGAGATACAAATAGTGTATTGAATATTGTTAACTTGTTTAT
TTTTGAGTATTTTTGAGCGAAAATTTAAATACATGGTTAAATAAAAAACA
AATGATACTGGTAGCAGTTCTGTTTTCTTTCTCAAACCCCCCAGGGTTTT
TTTTGCCGTCTTAGCTATTTTACAAATCTCGGAAAAGAACTCCCATAGAA
ATTCCGATGCATAACCCAATTGGTTAATTTTGAAATGATTTCAAGAAAGT
CATAATGGCAGACAATTTTAAAACTTTTTGAGGAAATGTGTGTAATTTAT
CGATGTTGATGTTTGTCAGTGCAGCTGGAACCTCGATATTCTAGGATTAG
AAAAAGCTATACCTGTTATCTTTTTTCTTTAAAGAATCAACTAACTTCGA
ACAAGTTTATCAAGCAAACTTTCACCATCCAAATGTATTTTTACAGCATT
TTAAAAGTACATAATTTGAAGAAGTAATCAAATATTTAATCACACACATG
CTGCTCACATCTCACATCTGATTTCAATCAATACTGTGAAATCGGGTAAT
TTGCATCATTGGAGGCTAACATGCATACCCCTCAAATGAATAACCTGGCT
GGTCATTAAAATACAAAGTTAAATCAAAATAAAATGGCAGAGTAGAGCTG
TGAGAGAAGCTGTGTAGTTCATTTGTTTTGAAATTTTGCTGCTTTGATTG
GTCAGCTGATAGCTATGCAAGTTTCCCTCCACTGATGCAAGTTACCCGAC
TTCTTGGTGATTCCCAAGATTACCCAAAACGCCCTACCAGCATTCGTAGA
ATTATTTACCTGACACATCTTGAAATATTATATACCAATAATCAAAGCGT
TGTCAAACATAGATTAAGAAAAAGCTCAGTAATAATATCTGAAAATGTTT
CTATAAGACAGTTTTTTTAAATGGCTCAAACTTTTAAAAATGAAAATTCA
ATACCATCATTTCTCAAAAGTTGATAGAAGGTATGATTTCTTACCAACCG
ATATCCAACCCCGAAAAAAAGGTGATCATTACATCATCAAAATTTGAAAC
CTTGCTTTTTTAACTTTTTACCCTCAAATTTACAGACATGGGTTTTCACA
TTTTTATCTTTTTAAAATGTAGGGTCTGTTACATGACGACAAACCAGCAT
TTCTTCAAGTTCATTCTTATTTAAAGCTTTTTGCCCACTGTTTCAAAACT
TTTTGTTATCTAGAATGTCCTGAATGGCTGCAACTATAATGAATTTTGAT
GTATTTAACAAATTACAAAATGCACCATCGTTGTACACAATGCAATCAAA
TGAACCTGCTATACGTATTTACGAAATTTGTGATAGCACAGAATCCAACC
CAAAACCAGAGAAAAATCATGATTTGATGCTTGGAGAATTTGTAACCCAA
CAAAATCTGGTAGGTTTTTGATTTAAAAAAAATAGTTTAAATGCTTAGAT
GATAATTTGGCAGTAATATTTTTTGGACCTACCCCGGTGGGNAAAAAAAA
AATAGTTAAAATGCTTAGATGATAATTTGGCAGTAATATCTTTCATATAT
AATGACTATTTGTAATTATGTGAGATCAACAGTCGAAATTTGTTCTCACC
AAAATTTAAAATCTCGTTGCTTGCCAAAATAAGTTCTCACCATGTTCTTA
CTAAAATTAGTCCCCTTATACAGGTAAATAATAGCTTTGTGGGCTATCTA
AATATCAATTCCAGGCTAAAATTTTCATTTATTCAAATACTCATAATAGT
ATTTTGTTGTTGTTTTTTCAAATTTTCTTCTAATTCTATTTTCATTAAGA
GGGAAATAACTGGCACACCTGATCTAAGTCAAGTTGAAGAATTGAAATTG
AAGGTTGATACAAATGAAACAAGCATTGGCAATATAGGTACGAGCTTAGG
TATATAAAATATGTTTTTTCTTTTGGTGTAAAAAGTTCAATTGCTCTTCA
AAATGACTTATGGGATGGGGCATATCTTTAACCCTTTAAAAGTGCTAATG
TCGAGTATATATTGGCCCTTCTGTATAATGCCCAGTTTGAGTTAGAAATC
GTCATTTTTAGTCTAACTTGTAGGAATTGGATTGTGCTTCATGGTCAAGC
AAAAAAAAAATTCAAAAGCAAGATTTTAATCTAAAAAGTCAAGAAAATGC
AAAAATTTGACAAAATCCACTTACACTATTTTGAGATTTTGACCGTTTTT
TGACCATTTTTGGTCAACGAGTTATCCGCCAAGAACCTCCAAATTTGGCC
CTGTCTTACTTTATTATGTCCTCTAGCGAATTGATTTTAAGTTTTACCAC
TGAGCACCTTTCCGTCATATAGGTCAGGTATGTGCACCAAAGGCGCCCAA
AAGAAAGAAGAGACTTTAAGCTATGAACAAGCTATGAACGAGCTTCTAAC
TCCTTCTAGACCCGGTGATAAAAGCCTTTAAAGTTAACCTAGCGATTTTC
TTATAAAATTAAAAAAAAAGACTGTTGCACCTTAAAGGATTAAGCAAGAT
TACAAGCCTCAATACAGACAGTATTTTATTTCGATTTGACAGGTTTTCGG
GCTTGCTTTAGTTCTGAAACTACTGTCTTTATTCATGATATGCACCATTG
CAATGTGTAATGACATTACATCGCGGACCCAACAGCTGATTGGTTGTAAG
TGACGTAAAGTCAGTCAATACGTCAATTTCAACCAATGAGCTGTTGGGTT
CTTGGAAGACATTGCAATGGTGCATATCATGGATCAGGAATGTAAATTAC
TTTCTAAAAATCGAAAATTTGTCCTCATGGAATTTAACTGAAAGCTTTAT
CAAGGCTCCTGTAGCCTGAAATTTTTTTCAAGCCTTTAAATTGTATTCAA
ATGAACGCTGAACGTTATGTAGATTATAAAAATGTAATAGAAAAACAAGC
ACAGATTTCCGAAGGCCCCGAATATGCTAAGAATTCGACACTATCCGTCT
TTAAATAATTAAAAAAATAAATTTAATCAGGAACGTAGCAACTCTTTGAA
AATTTATCATTGGAATCAGGTCTTATTTTTTCTAGGTTCAATGGTTCCAG
GTTTGAAAAGGTTGAACCTGAGCAACAGCTATGTAACTTCTATAAGGTAT
GAAAATGTTATTATCCTTGTTTTATGTAGCAAATTTTACGACACCTCAAA
TAGCTTTGAGAGCGAATCTTTACAATTAATTGGATTTCTGTTAATTGCAT
CTGTTTTCTAAACAATCATTCTGTGAACATGTTCATAACGCGACAGTTAC
TTAACTTCAGGGCCTTTTCATACTGCAAAATTTATTTATTTCCTGTTTTT
CATATCTCTTTCTACTTATCTCAGGGATCTTGGTACAAGTTTTAGCAATT
TGACGATGATCTGGTTATGCAGGTGTTCTTTGGTTGAACTTGACGGGATA
AGCTCACTGAGCTCGATGAAGGTACCATTCCATTTCCAAAAACCATTCCA
AGTCTTGATTACTACCGCTAATTCTCTTGACCCTTTATTAAAAATAGCAG
TGTCCGTTTATTCGCAAAATTTATACTTTAATTATAGGCAATTAGGCGAG
GCAAATTTAATTTATTGCTTATACGGGAAGATCTCCAGAAAAATATCGGT
CGGTCGGTCGGTATATTAAAAATAGATTTCTAAAAATCTAGGAATGGAAG
GTCAAGATCTAAAATATTGGTGACGTTTTGACGTTAGTCTTTATCAATGA
GCGCCTTTTGTGTCATTTCTATTGTGATATTTTAAAATCGTCGTTGAGTT
CTGGAGTGAATTTACACTTTTCAACTTATTCAGTTTAAAATATCTGCAAA
AAAACTTACAAAGTCCATCCATAAGCTTTGCAAATTCAATATTAATTAAT
AATTAAGTTTGACAGGAAAATTCACTTGCTCTGCTAATGATTTTATAATC
TAGGTTGTTTAGCTGTGGTTAAATATACCTTTGAAAAATTATTTTAACCA
TTCTCTTATTAGTTTCGGAGGACCTTCGGTTGGGACAATTTTACCCCAAA
ACTTATACATAAGAAGCTAGCCAATATTTGAGGCCAAAACTTACACAATA
CGGCTCCGATCCATCTTGTCTAAACCCTTCTCTATATATTATGCAAATTA
GAAGTTAAATAACCCAATTTTGATCCATTTTTATATACAGGAATTGTTTT
TGGCATTCAACGATATTTCTGATTTAAGCCCATTGAGCATGCTTGATACT
TTGGAAGTACTCGACTTAGAAGCGTAAGTATACAACTGTTAATTTGTAAT
TCAATTTTTTAACAGAAAACTTCTGCTCATTGTAAGTAGATAAAGAATAT
CCCAAAGGTCCATTATGGAATTTTAAAACAGAAAAAGAAACCAATCCTCA
TAAAATGCAGGCCCGGTGGAAGTGGGGAAACTAGGGAGACTTCAGCTTTC
CCACTTTTGAGCAAATGAGACTTTTTTCTCATATTTCTACCAAAATTTTA
TCTCGTTTGGGCTTTCAGCCTCCCCACTTTAACGATTGTTCCGGGCCCGA
AATGGGATGTCATTTTGGAATCATTTCCTATCCTTAGGTGATAATTAACA
CATTAACCCTTGTACTGTATATTTGATTTCGTTTTTCTTTACTTATCAAG
CAATAACATCGACGATATTACCCAAGTGGAGTTTCTTTCCCTGTGCAGTG
ATCTGATCAACCTGACGATGAAAGGCAATCCAATTGAAGTCAAACCAACT
CCTGAATCACAGAAAGCTGTAAGTCACCAAATGATCGACCTTTGCTTTTT
TTAAATGTATCTAGCCTATACTAGACGTCACGGCCTTTTCTTTATACAGT
AACGTCTATTCCGCTTTTTCGAAAGCCCATTTTTTCGGGCTCCAAACATT
CTATTTTTTGACGTCACTTTAAACTTTTGAAGCCCTTGCAGTAGCAAAAT
AATCGAATTTGCGTCAAAGCACTTGAAAGGCTTCTATTTCACGAAAATCA
TCAAAGTGGAACTCACTAAGAAACGGGATGAAAAATCCCGGTTTTTGGTG
AGGTGCTCGCTACTGAAAATCTGCAAAAATCTTACTTAAAAACCTAATTT
GTGAAATATGTCAAAGCTTGTGAAAAAAACTTAAAAAAAAAAATTCTTTT
ATTCTGTTTTCCAGGACTTGAAATATTATAATTACTCAGATGCAATCATC
ACTTGTTTACCGATGTTAAAAATCTTGGATGACGAACCACTATTGGTTGA
ACGAGTTGATGGCCAAGAAGTGAAACGTGTCAATCCAAGGAAAGTGAATA
GGGACGAAGGTGCATTTGAGAATGACTTGAAGCTGATTGAGGTCAGTTTA
AAGTCATTAGAGACTGAAGAGCTTGTTGAGGAGAATGAAGGTTTGTAATG
TTAAAGGATTTTGCTTTTAAAATAAGACTGATATCGTTTGCTTACTCATC
AATTTTGATTTACAAGCTTTTGTTTTGATCTTTCAAATGTACTCAAATCA
CAATTGATGGACTTTTGCATAATTTCTACACTACACTACTACCTTGTTAT
CATCAATGAGGAAAATTGGAAAACTTTCTTGAATCGCACTTTCAAGAATT
TTCAAAGACATTTACTTTCGCGAAAAAGCCTGAAATTCACGAAAATCGCG
AAATTGTCTGCTTGCAAAAGTTTGTACGCCAAACATATTCTGGTTATGTT
TTTATGCACGTATACTTTCTAAGTAAAAGGAGCTTAAAATCCATATCTTA
TCAATTGGCAAAATTGATCTTAAAGTTTTGTTCGGGCTAAATTTGAGCTC
TTATGTTCTTATGAATTTTCAATCATAAAACCGTATAATTTCTACGTTAT
TTACAGATATCGATCAAAGTGTAGCACGGCCGCGGACAGCAACACGCCGC
TCACGAACGGCGAAATCACCAGAAAAGAAAATCACACGCGCAATTGTTTC
ACCTGAAGATCGTATTTTATCGTCAGCAATCAAAAAGGATACTGAAAAGG
AGTCTGAACCCATGAAATCTACATCTGAAGTGACGAATTTTAGTAGTGAT
TTAACTTCAGGTATGTTTAACTTATCTTGATGCTTTTTTACTCCTTTTTG
CAATACCTCATAGCGACCATAGTGCAGTGGTAGAGCATCCGACTACGGTG
TGCAAGGTTGTGGGTTCAACCCCCAGCCGGGTCATACCAAAGATTCCCAG
AATGGTACTTGATGGCTCTCTGCTTGATGCTCAGCAATTAAGAGAATGAT
CAAGGGTAAATTGAGCAATCCAGGGAGAAAGAGTGGCGCCCTCCCCTACC
TTCGGGTAGAAAGCTATCGAAAGAGGAGCCTTCGGGTCGCCTCCGACTGC
GATCGCAGACTTACTTACTTAATACCTCTAGTCTAGAAACATACTTCTTT
ATCGTAATTCTTCTGTATCCCGATTCTCACTCAATGAATTTTGACATACT
GTTTGTTCCATCCATCCGTCTATTGAAACCGATATTACATTTAGCGTTCC
TTTACACAGGTAATGTTATGTGTGGGAATCCATTTGCGGCACTCCGTCGC
CGAAAACGTCAAACGACTCCTGAGGATAAACCACCTCAAAAAGAGGAGCC
AGTAACCTTGGTTACGAAGAGTAAAAGTGACACCAGCGCTAATATATTTA
AAGCAGAACATTCTTATTTGTCGGCTGAGGAAACGAATGTGGGGAAAAAG
GAAGATGTGTTTGAAGAATTGAGACAATGGAGGCTGAAGAATCAATCGTA
AGTTTGTTAACGACGGTAGGCAAGCCAATGATTGCAAGATTACTGAATTA
CCTTGAGTTTCAAAATAATAAGTGACATTGTTTTATGGATATGAATACAG
TTTACTCTCGCTAATTCGAACTCAAAGGGGATCTTAATTGTTCGAATTAC
AAAGAGATTCGAATTATAGAAAGTATAACAGGAGGGTTTCTCCTTGACGG
GGACTGGAGAGTAGTTCCAATAATAGAAAGATTCGGGGTGATAAAAGTTC
GAATTAGTAAGAATCTATGACGTATATTGTTTTGAAGCTTTGTTGTTATT
TGTTGTCTTTGCATCCGTACAGTTGACTCTCTCTAATTCGATCTTCATGG
GACCAAAAGTTTTCTTTCGAATTAGGGAAAGATTCGAATAACAGAGAGTA
ATCTAAACCACTTTATATATTAGTTCGAATTACATAAAGATTCGAATAAT
AGAGATTCGAATTAGAATGAGTTGATTGTATTTTAAAAGTCAAAGTTCCA
ATCAAAACTTTTTTCCTACAGATTGTTTGATAGTATGGCAACGACTAAGA
TCAAATCTAACACATCAAGATCCACACGTGAGCAAACCACATCACCATCG
AAAGCTGTGGACACTACAGCTTCTGGAGGGGATGGAGATGTTTCACCAAG
ACGAAAACAACCAACACCGTTGAAGCCTCTATCTCCTCTACGATCGTCTA
TTGATAGCTCAATGTTTAAGTATGTTTCTCTTTTGAGTTTATTTTGGATA
TACTTAAGTCAATTCTACAAGTACCATTTTTTTTCAACAATGGTTAATTT
GAGTATCTATCTAATCTTCATCGTAGTTTTACGTTTACTTTTTCCCATCA
ATTGAACTTTCCATTTGCCTATGACCTAGATTAGGGGTAGAAACCAATCA
AGTAGTCAGACGGCTGAGAAGTAAGTGCGAGTCGGTAGATATAAGTTTGG
CATGAAATTATGGCTACCTCGAATAGTATATTTTGGGGAAAAATTGTCAA
ATTTATCAAATTTCCTGAAAAGTAAAAAAAGTAGCTGTCTTTAAATGCAT
GCTTCCCATATTCTCTTTTAGGCGCCGTACATCACCGCAGAAACCAGCTT
TTTCCCCGGCACCACCCTCCCTTCCTCGGAAAAATACCACCCCAGGGCGT
ACAAGGCGTTCCCTACAGACTAGTCCTCCGAAAGCTGTTTTACCAAATAT
TGGTGATCGGCCTCACACTGTAGGCGGAACAAGGACAGAAATATTCCTTA
CAGATGTTTCGTATCCAAATCAGTTGTCAGCGAGAGACGGCAGTGACATA
CAGCAAACTCACGTGACATTAAATCAAAGGTAATTTGATTCATTTCTTCC
CCTTTCTTTTCCCAGTTTACCTAAAGCATTTTAAAGGATCAATTAGAATA
AGTTTTACGTGATAAGAATTATACCTTTTTTTCATCCATAAATATTTAGC
GGGTAGGACAAAGGAAGCCGACCCTATCTAAATTGAACTAGGATTTAAAT
TTCTATCTTTCTTTATAGCTTGAAATTTGTCCTTTCTAGTCTTCTAAAGT
TATTGGACATTGTTTCCATCAGGGTAAGAACGATTTTGTAACTATTTATA
AAAATGGTTTCTGTTTGTATTTATTTCCAGGACAGACATCAACGCCAACA
TACGTAGCAAGAGTCATCCTGTGCAGAACCAAAGGAAAACTCCTTCGCCG
CCTCTATCGCCTTTAAACAGACCAATGACCGCCCGGGCGGCTTTACAATC
GCTTCANCCGCCTCTATCGCCTTCAAACAGACCAATGACCGCCCGGGCGG
CTTTACAATCGCTTCAAAGACCCTTCTCTAGGACTAATGATAGGTGAAAT
TGGGTTTCAAATAAACTCTTATACACATATATGTGAATATCTCGTCTCAA
GTGTTGGTGTCTTAAGACTGTTTAAGCATATGATAATCTAGAGAACTCAA
GGACTTCTGTTTATCGAGAGATACTCTGTCGTACAAGTGACAAGAACACA
GTCAACAAAGATATATCTCAAAGAACAGACCATCAAAAAGAGTCTTGTCA
TTGGTTTGTTATGATTTATAAGACGCTACTTTTAGTATGTAGAATGTTAT
GTCGTGACCAAATTTCGGTTCTTGTGGGCTTCACGTTATATGGGAGCTCT
ATAACCGTTCGTTACTGTTTGTTATTATTTTTTTGGATCTATTTGTTCGT
AACATTTGATATTTGATATCGCAACTTGGTTCTTCGAGTATTTGTGAGCG
GTTGAGTGTTTTTTTATATCTTTTTCGATTCTTTCCGAATGATTTTGAAC
TAGGACCTTTTCATAAATTGCGTCACGAACATCACTTGCCTTGTATTCAA
ACAATTTCCATGGTGATCATATCCCTTCAGACTGATTTTATGAATAGAAA
CTAGTTGTAATAAATTCCGCTTGGAGTTAATCACCACGACAATAATTTCA
AAACGAGGCAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCTATTCTC
AATCACCGCTAATGAGAACATCTTGCTGTTCCGATAAGTTAGCGTTCACG
TTAAATTCAAATTAACAATAGTTTTCAACCATAGTTATAAGTCTCTGGGT
AACAAGTAAACTAAGTATCCGAATAAATGTTTTCCTTGACAGCTTATGAC
CAGCCCCGCGGGACGTTATTCAGTTTGAATTTTGCAATGCGACTTCCCAT
GCGTTTGGTGCATTATGTAATAGGTATGTTCAATTTTCTTGGAAACCGTC
TATAATAATTAACATAGTTTCTAGGGTTAACTCTGTTTTTTTTTAGTTTG
AAAGTTCCATTTAATATTTATGCATGTAAATAAGAGAAAAATACTAATTA
AAGTTTATTGCTTAATTAAGGTAATATTTCTATTTTTTCACGATTTTTAA
ACAAAAGATTACCATTACAATTCAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044825XLOC_044825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072196-exon-scaffold_71-1575043694:897865..897991TCONS_00072196-exon-scaffold_71-1575043694:897865..897991Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:892983..893178TCONS_00072196-exon-scaffold_71-1575043694:892983..893178Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:891296..891356TCONS_00072196-exon-scaffold_71-1575043694:891296..891356Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:890971..891067TCONS_00072196-exon-scaffold_71-1575043694:890971..891067Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:890169..890251TCONS_00072196-exon-scaffold_71-1575043694:890169..890251Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:889674..889791TCONS_00072196-exon-scaffold_71-1575043694:889674..889791Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:889052..889277TCONS_00072196-exon-scaffold_71-1575043694:889052..889277Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:888382..888585TCONS_00072196-exon-scaffold_71-1575043694:888382..888585Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:887695..887932TCONS_00072196-exon-scaffold_71-1575043694:887695..887932Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:886973..887170TCONS_00072196-exon-scaffold_71-1575043694:886973..887170Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:886363..886620TCONS_00072196-exon-scaffold_71-1575043694:886363..886620Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1575043694:884764..886061TCONS_00072196-exon-scaffold_71-1575043694:884764..886061Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:897865..897991TCONS_00072196-exon-scaffold_71-1510915933:897865..897991Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:892983..893178TCONS_00072196-exon-scaffold_71-1510915933:892983..893178Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:891296..891356TCONS_00072196-exon-scaffold_71-1510915933:891296..891356Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:890971..891067TCONS_00072196-exon-scaffold_71-1510915933:890971..891067Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:890169..890251TCONS_00072196-exon-scaffold_71-1510915933:890169..890251Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:889674..889791TCONS_00072196-exon-scaffold_71-1510915933:889674..889791Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:889052..889277TCONS_00072196-exon-scaffold_71-1510915933:889052..889277Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:888382..888585TCONS_00072196-exon-scaffold_71-1510915933:888382..888585Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:887695..887932TCONS_00072196-exon-scaffold_71-1510915933:887695..887932Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:886973..887170TCONS_00072196-exon-scaffold_71-1510915933:886973..887170Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:886363..886620TCONS_00072196-exon-scaffold_71-1510915933:886363..886620Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1510915933:884764..886061TCONS_00072196-exon-scaffold_71-1510915933:884764..886061Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:897865..897991TCONS_00072196-exon-scaffold_71-1491911889:897865..897991Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:892983..893178TCONS_00072196-exon-scaffold_71-1491911889:892983..893178Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:891296..891356TCONS_00072196-exon-scaffold_71-1491911889:891296..891356Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:890971..891067TCONS_00072196-exon-scaffold_71-1491911889:890971..891067Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:890169..890251TCONS_00072196-exon-scaffold_71-1491911889:890169..890251Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:889674..889791TCONS_00072196-exon-scaffold_71-1491911889:889674..889791Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:889052..889277TCONS_00072196-exon-scaffold_71-1491911889:889052..889277Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:888382..888585TCONS_00072196-exon-scaffold_71-1491911889:888382..888585Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:887695..887932TCONS_00072196-exon-scaffold_71-1491911889:887695..887932Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:886973..887170TCONS_00072196-exon-scaffold_71-1491911889:886973..887170Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:886363..886620TCONS_00072196-exon-scaffold_71-1491911889:886363..886620Clytia hemisphaericaexon
TCONS_00072196-exon-scaffold_71-1491911889:884764..886061TCONS_00072196-exon-scaffold_71-1491911889:884764..886061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:884764..897991 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28095	1.17154	0.480225	0	0.322787	0	0.37836	0	0.894854	0.628731	3.46077	1.02522	0.130366	0.00056321	0.246876	0.170584	0	0	0.933217	1.18857	0.653818	0.361433	0.473413	0.341235	0	0	0	2.67658e-09	0	0
Blast
[Close]
BLAST of TCONS_00072196 vs. Swiss-Prot (Human)
Match: LRC56 (Leucine-rich repeat-containing protein 56 OS=Homo sapiens GN=LRRC56 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.412e-39
Identity = 108/353 (30.59%), Postives = 169/353 (47.88%), Query Frame = 2 
Query:  302 ICNPTKSGSM------VPGLKRLNLSNSYVTSIRDLGTSFSNLTMIWLCRCSLVELDGISSLSSMKELFLAFNDISDLSPLSMLDTLEVLDLEANNIDDITQVEFLSLCSDLINLTMKGNPIEVKPTPESQKADLKYYNYSDAIITCLPMLKILDDEPLLVERVDGQEVKRVNPRKVNRDEGAFENDLKLIXXXXXXXXXXXXXXXXXDIDQSVXXXXXXXXXXXXXKSPEKKITRAIVSPEDRILSSAIKKDTEKESEPMKSTSEVTNFSSDLTSGNVMCGNPFAALRRRKRQTTPEDKPPQKEEPVTLVTKSKSDTSANIFKAEHSYLSAEETNVGKKED--VFEELRQWR 1336
            +C  T+ GS+      +P L +L L+ S++ S+RDLGTS  +L ++WL RC L +LDGI+SL ++KEL+ ++N+ISDLSPL +L+ LEVLDLE N+++D+ QV +L LC  L  LT++GN + ++P P       + YNY   +   +P L++LD+       V         P ++++D  A +  +K                   D + S+   ++   R      P   + R    PE  +LS  +         P  +TS +T+      +G V+CGNP   LR R+ Q         +E P  L      D +A+         S  E +     D      LR WR
Sbjct:   76 MCVDTREGSLGNFGVHLPNLDQLKLNGSHLGSLRDLGTSLGHLQVLWLARCGLADLDGIASLPALKELYASYNNISDLSPLCLLEQLEVLDLEGNSVEDLGQVRYLQLCPRLAMLTLEGNLVCLQPAPGPTNKVPRGYNYRAEVRKLIPQLQVLDE-------VPAAHTGPPAPPRLSQDWLAVKEAIKKGNGLPPLDCPRGAPIRRLDPELSLPETQSRASRPW----PFSLLVRGGPLPEG-LLSEDLA--------PEDNTSSLTH-----GAGQVLCGNPTKGLRERRHQCQ------AREPPEQLPQHRPGDPAAST--------STPEPDPADSSDFLALAGLRAWR 389
The following BLAST results are available for this feature:
BLAST of TCONS_00072196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC568.412e-3930.59Leucine-rich repeat-containing protein 56 OS=Homo ... [more]
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