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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072191 ID=TCONS_00072191|Name=TCONS_00072191|organism=Clytia hemisphaerica|type=transcript|length=786bpRun BLAST on NCBI protein sequence of TCONS_00072191-protein >TCONS_00072191-protein ID=TCONS_00072191-protein|Name=TCONS_00072191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp FFFYQFQGIRGEEGQPGFQGQRGNRGQPGPPGPRGAPPIESLIPSSSWRDRun BLAST on NCBI transcript from alignment at scaffold_71:780710..787785- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072191 ID=TCONS_00072191|Name=TCONS_00072191|organism=Clytia hemisphaerica|type=transcript|length=7076bp|location=Sequence derived from alignment at scaffold_71:780710..787785- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:780710..787785- >TCONS_00072191 ID=TCONS_00072191|Name=TCONS_00072191|organism=Clytia hemisphaerica|type=CDS|length=6264bp|location=Sequence derived from alignment at scaffold_71:780710..787785- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072191 vs. Swiss-Prot (Human)
Match: COBA1 (Collagen alpha-1(XI) chain OS=Homo sapiens GN=COL11A1 PE=1 SV=4) HSP 1 Score: 85.5001 bits (210), Expect = 2.535e-18 Identity = 58/207 (28.02%), Postives = 105/207 (50.72%), Query Frame = 3
Query: 204 LSYLREEVDDLQYPRGTRDNSALNCQELLDNRNDIQNGHYWIDPNRGCAWDAFETKCLFKGDAGYTCIKPQPKTVHLR-------KFG--ITRHQEMVLSKFVKVKA-SVRRPQLNFVRLLASDGYQDVTLRCFRPL--YNI------KNFSFVGHNKIEINGRDRTQVKIIANSCRRANKRRLGRITFRIFTDGNLNLFPIKDVRI 770
L+ L+++++ +++P GT+ N A C++L + D +G YWIDPN+GC+ D+F+ C F G TCI P K+ +R K G + + L ++ V+ S+ Q+ F++LL + Q+ T C + Y++ K F+G N E++ + +K + + C A+++ + I T ++ PI DV I
Sbjct: 1583 LNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFT-SGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDEEMSYDNNPFIKTLYDGC--ASRKGYEKTVIEINTP-KIDQVPIVDVMI 1785 The following BLAST results are available for this feature:
BLAST of TCONS_00072191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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