TCONS_00072183 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072183
Unique Name	TCONS_00072183
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1417

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_71:551840..557703-

transcript sequence

>TCONS_00072183 ID=TCONS_00072183|Name=TCONS_00072183|organism=Clytia hemisphaerica|type=transcript|length=1417bp
CCCTAATGTTTAAGATTTAATTGATGCTAATAAGTTAATTTTCAGGATGG
AAAAAGCTCAGCTGGTGTCATGCTTCAAAATTTACCCCACACTGAATGTG
CAAGCCCTGAAGAAGCATTGAGAATCCGAAGAGGACAACCAgcgaaaatg
atttttgaagagAGTGAATTGAGAAGCAGTCAATTTCAGAGAGTGTTTCA
ATACCTTCAACGTTATGAAGCAAATCCTAAATCTTTAAACGACTTTGATT
ATGAGCAAAATAAGAATATACAAATCAATGTTGTTAGTGTTCTGGAAGTT
TTATTGAGataTTGTGGTATTCCGGACCCGTCATGGATGGAACTGAGAAA
TTTTGTgcattttttcaatcaaaatctTCTTGATTGTGAGCGAAGTGTGT
TCACCAGTGTCTATCTGCGTGCAGATTTCCCTGGATTCAGAACATTTGTT
GTTACATTCTTATTGGAAATGGCAAGGGACTTTGCGACAAGATCACTGGA
TCAGAATGACAGAAACTCCAATAATAATTTGGTGCAATTTAAAAGAACGT
GGGAGCAAAGCGCGCATCCGTACCTTTTCTTTAACACTGATGGGAACTCG
ATGACATTTTTTGGAATCAACATCACTCCAAATTTTGACCTTATTGATCC
TCAAACACAAATTATCCTCAAACAGAAAATCATTGAGCAACAATTGTACC
AAATTCTGGATCGACAAATGGCTGGAGACTTCGTCAATTTCAAAACTAAT
TTTAACAGCCTTTCAAAACTCAACAAGATCAAGGTCTTGTGTCGTGTGAT
GGGACTTCCAGAAACTGATTTCGATCCAGATCCAACATATGAACTCACCA
TTGACAACATGAAGAAAATGTTAGCTATCCATATGAGATTGAGATGTGGA
GTACCAGTTGTCTTGATGGGTGAAACAGGATGTGGAAAGACAACTTTGAT
CAGATTCATGTGCTCGCTTTGTGCTGGTCCTGCCGCTGGAAACCAAAGGA
CACCTAAAAATATGCTTCTTGTTAAGGTACACGGAGGCATTACCATGGAG
GACATTGAATTGAGAGTCAAGAAAGCTATGGAAATGGCCTCACAGAATCT
CAACTCACACACTGTGCTTTTCTTGGATGAAGCAAATACAACTGATGCTA
TTGGTCTGATTAAAGAAGTCATGGTTGATAAAATGTTGTTTGGAAAACCA
TTGGCAATTGCTCAATATGGGCTTGATATCATTGCAGCTTGCAATCCTTA
TCGACAACATACAAATGAGATGATCAAAAAACTCGAGACAGCTGGCTTGG
GATACCATGTCGGGGCTGTTGATACTTACGAAAAAATCGGTGAAATTCCA
CTCAGGCAGTTGGTGTACAGAGTTCATCCTCTCCCAGAGAGCATGAAGCC
TTTGGTTTGGGATTTTG

Run BLAST on NCBI

transcript from alignment at scaffold_71:551840..557703-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072183 ID=TCONS_00072183|Name=TCONS_00072183|organism=Clytia hemisphaerica|type=transcript|length=5864bp|location=Sequence derived from alignment at scaffold_71:551840..557703- (Clytia hemisphaerica)
CCCTAATGTTTAAGATTTAATTGATGCTAATAAGTTAATTTTCAGGATGG
AAAAAGCTCAGCTGGTGTCATGCTTCAAAATTTACCCCACACTGAATGTG
CAAGCCCTGAAGAAGCATTGAGAATCCGAAGAGGTAATTTTTACATTCTT
GTTTTTATTCCGAAGAATATTTATGAAATATCATTTTTTTAGATCATAAT
CAGATTTATATTGGCCTACAGATTCCTATGTTGTCTTGTGAAAACTTTTT
AAAATTGTTGAGCTAATTGTAAGTTAAGTAATTTGCTTTTGAAATTTCTA
AAATTGATTCTTTATCCAGTTTTATGTTAAGTTTGTTTTTTTACAACCGA
AACTTGAAGTTTTCAAAATCATGGACAATGAAAAAAAACTAATAAAAACT
TATTTGATTGTCAAGAAAAAGAACTTAAACATAGTTTTCACCAAAATTCT
CTCATTAATTATTTCTTGTCATCTGTTTTTAGGACAACCAGCGAAAATGA
TTTTTGAAGAGAGTGAATTGAGAAGCAGTCAATTTCAGAGAGTGTTTCAA
TACCTTCAACGTTATGAAGCAAATCCTAAATCTTTAAACGACTTTGATTA
TGAGCAAAATAAGAATATACAAATCAATGTTGTTAGTGTTCTGGAAGTTT
TATTGAGGTAATACACTCTTCTGGAAATGCATAAAATAATTACGAACCCC
GTTATCAAAGACTTGTGATACTTCAACGTCGTCAGACAAATTTAATCTTT
CCAAACGTTTGGTGTTTTATAACAAAATTGAAAACGGTTATTTGGGAAAA
CATATTTGTAAACATGTGTAAACGTCGTTTAAAGTAGTTTCATTTATGTT
CGCCTAATGCCAAACCGAAGGTATTTATCGTTGCTTTCTAGCACGGATTC
TGACTTAGAGGCGTTCAGTCATAATCCAACAGACGGTAGCTTCGCACCAT
TGCCTTTTCAAGCAAGTGCAAATACCATTAATAATGAGGTCCACAATGCT
GTTGACTTATCTCGAGAAATATGTTTTCCTATACAGGAGATTCTTGCTGA
TTTTTTTCCTAAGTATTTATCGTAACCTTCAATATTGAACAGTTTGTCAA
ACTATAAGAATTTTAGGTTAGTATCGTTTACTGATATACTTTTCTGCTTT
GTATATAACTCTTTGGTCAATTAGTTTCAGTTGGTCACATAATTTTGACG
CCATAATTTCCTTCCTAGGGCTCCAGTTAGAATTTTTTATTACACAGCCT
CTCTTTATCATACATGCTGACACTGGAGTACAAACCTGTTTTATCTCCTT
GTAAGCTGTGATACTTTGGAGCCTTTGTCAATTACCGATTTTGTTCCTGA
TTTACTATAGAAGTTACCCGAATGGTGATCAAAGTCAATATGTTGTCTCC
TATTCTTGTTTAACAAGCTGGATTTCTTTCTTTTTAGATATTGTGGTATT
CCGGACCCGTCATGGATGGAACTGAGAAATTTTGTGCATTTTTTCAATCA
AAATCTTCTTGATTGTGAGCGAAGTGTGTTCACCAGTGTCTATCTGCGTG
CAGATTTCCCTGGATTCAGAACATTTGTTGTTACATTCTTATTGGAAATG
GCAAGGGTATGAATTTAGTTTAATGAATTTGATGAATTTGATGAATGAAT
TTACACACCAATCAAAGGGAACTAACCGGAGTGTCTCAAAAAAATTATGC
AAAAGTAAAAAAAGGGAATATGGTGGAATTATGAGACAATAATATGGTGA
CATTTTGAGAGGTTTATTTGGAAATAGAATGTTTTTCGAGTATTGAGTTA
TTTAGTTGTTTTATTTTTCAATGTTTAAATCTAGTTTTCTAAACCTTAGT
TCCAAATCAATTTGAAACTTTTGTGTAATCAGGTTTTCTTACATATGTAT
TTAAAATGATATGAAAAAAGTAATTTTATTCGTTATCGCTTTAGGACTTT
GCGACAAGATCACTGGATCAGAATGACAGAAACTCCAATAATAATTTGGT
GCAATTTAAAAGAACGTGGGAGCAAAGGTAAAACATCAATCACTCTACTC
AGATACCCTAAACACGCTTATTACACCCTTGTCTTGTGGCCTCAGTTGAA
ATTTTACCCACAACAGGGATCCCAGCTGGCACACAACGTTGTTTCAACGT
TCAACGTTATGAACGTTAGATAAACGTCGAAAAAACGTTGTGTGCCAGCT
GGGATAAAGATTTACATCGAAATCCCAAAGGGGATAGAAATTCTATTGTT
CCAAGCTAAAAAATATCCAGCGGGGATGGTTTTGGTGGGCAATTTTGTCC
ATCAAATTTCAAATGGGGGCTGAAATTGTGGGATATCTTTCTCATTGGGG
AGGAAATTTTGTCCCGGGGGTCTGTAACATGGGTGTAAACGTTGCCAAAC
TTTAAAGAACTTGTCACACTTTGCTACTTTTTTTGAAAATAATACCTAAA
AAGAATTTTGTCTCTTTCTTTCTTAGCGCGCATCCGTACCTTTTCTTTAA
CACTGATGGGAACTCGATGACATTTTTTGGAATCAACATCACTCCAAATT
TTGACCTTATTGATCCTCAAACACAAATTATCCTCAAACAGAAAATCATT
GAGCAACAATTGTACCAAATTCTGGATCGACAAATGGCTGGAGACTTCGT
CAATTTCAAAACTAATTTTAACAGCCTTTCAAAGTAATATTTCTTTGTTA
TCTTTTACATTTTTTAAGAAATGGAATTTTAGTTGGTAGAAAAAGTACCT
TTTCCAAATTCTTCGGGAGGCCGCATTTGGTTTGAAAACTGCTATTCGTG
ATACGCACCAGTCCTCTGACATTACATCACGGACCCAATAGCTGATTGTT
TGTAGGTGACGAAAAATCAGTCAATACGTCACTTTCATCAAATCAGCTGT
TGGGTCCGTGGAAGACTTGCAATGGTGCATATCAAGAATAATGCGGCCAA
GGAGTTATGTAGAAAATTCGGAACTTTTATTCATGATAAGCACCACTGCA
ATGACTTCACGAAATTATGCAACTTTTTCGTTTCTGTTCCACCCAATACG
TCACTTTTTCTATTGTTTAAGTGACGTATTGGGTGGAAAATTTTTTCTCA
AGTTCTCAGAAGACTCTCCAGTGGTGCATATCATAAATACAGTGTTCCAA
ACTTGGTTTTTCATTTTAAAACATTATGATGGTACCTTTTTATAATGTCT
TTATACAATGTACTGATTTGGAAAGCCTGTCGTGCATTATTGGGAACTAT
TGCTTCCACTCTGAAGAATTGTACTCATTAGCTTTCGGGTTATCACTCTT
TCAGACTCAACAAGATCAAGGTCTTGTGTCGTGTGATGGGACTTCCAGAA
ACTGATTTCGATCCAGATCCAACATATGAACTCACCATTGACAACATGAA
GAAAATGTTAGCTATCCATATGAGATTGAGGTAAAAATCTTCATCGAATA
AACAGGTTAAATTATCACTGGATTATAATAAAGTTACCTTTAAATTTTGG
CGGGAACAAAATGTTGTGGATTTTGCAAATTTTGTCTGAAATCCGCCAAA
TTAAGTTCCCGCCAAATTTATTTTTTTCTTTTTATGTCCGATTTTTCATA
ATAATTTACCCCCGATATCAATGTTTTCACCTTGATCTCGGATTTAAAAA
TCCGTCATCCACCAAATTAAATTCTCGCCAAATAAGCTTTTTCCCTGATC
TGCCAAATTAAATTCCCTACGNGCCAAATTAAATTCTCATCAAATAAGCT
TTTTCCCTGATCTGCCAAATTAAATTCCCTACGAAAAAACTTTTTCAGCC
ATCCGTCAAATTAAATTCCCGCCAAAATTTCTTTCCTTAAAAGGTGGTAT
GTTAATTTTAAGATTTTGGGATTGTGCCAGGTTTTAGCCGAATTTTATGA
CACAAAAAAAGTCAACAAACAATTTGCTAATATGATTATATCAATAGTCA
ACATTATTTCAGAGTGCCAAAAATTTTACAGAAGATAAAAAACTTTTCAG
TGAGCTGTTAGCAAAAAACGCCAGGGTGGTGGAATACACCCGGTGAAAAA
AGGGTTAATAATCTATTTTAATCTTGACAGTTTTTTATAATTATTATATC
ACAATCTCTTTAACAACAGATGTGGAGTACCAGTTGTCTTGATGGGTGAA
ACAGGATGTGGAAAGACAACTTTGATCAGATTCATGTGCTCGCTTTGTGC
TGGTCCTGCCGCTGGAAACCAAAGGACACCTAAAAATATGCTTCTTGTTA
AGGTAACCAAAATATGAAGTGTAATGTTGTCATAAAGCATCCAGGACCTC
AGAACAAAGTTAAAAATGTCTGACAGTCAAGGATATCCTTGCAATTACAC
AACTTTAACCATTGGTAAATGTAATGATTAGAAAATAAAAGCGATTAAAA
CCATGTCAATTTACACTTAGTATGAAAAAAAAGCCATTGCGAATTCACAC
CTCATGCTAAAAGTAAAAACATGTTTTTCCATTTCAAAATTCAGCACGAT
TGTCGAAATCTGTGATAACTTGAGCTAGTTTGCTGTGCATGTTATGAGTT
CCATCTGTGACTTAAAAAAATTTCCCTTCAAAAAGGTACACGGAGGCATT
ACCATGGAGGACATTGAATTGAGAGTCAAGAAAGCTATGGAAATGGCCTC
ACAGAATCTCAACTCACACACTGTGCTTTTCTTGGATGAAGCAAATACAA
CTGATGCTATTGGTCTGATTAAAGAAGTCATGGTTGATAAAATGTTGTTT
GGAAAACCATTGGCAATTGCTCAATATGGGCTTGATATCATTGCAGCTTG
CAATCCTTATCGACAGTAAGTTTAACAGTCTTGGGTTAGATTCAAGGTCG
GGTCATACCAAGGACTTTCTACTTGAAGTTTGTCTCGAAAGTATGTGGAC
ATTTTAGTTTTTTTACTTTTTCTCAGCACCCATCCAGGCTTTGTTTGAAA
GCTATACACCGTTGGAAAGGTTTTAAAATTGAAAAATAAAGAAGAAAGAG
GAAGACGAAATAAATGAAGATTTTTTCTACTGTTTACAAAATCATGACAT
GAAATCTTTTAGAATAAAATTATCTGAACTTTACTGATTTCAAACCTGTG
TTCAGATTTTTCGTATCTTTCTAAGATAAAAAGTTACAGCTCTTTGACGT
CGGCCTAAAACGACCAAAAATGAAAGCAGTAAAAAATAACCAACTGTTGC
TGTAACATTTTATCCAAGAAAGATACCAAAAAAATGTATGCAGATTTGAA
ATCGTCAAGGCTCAAATATATCATAAAGAATTTCATGTCATGATTTTTAA
AACGAAAAATGTTCAATTTTTTCGGTGTATAGCTTTCAAAGAAAGCCTGG
ATGGATGCTGAGAAAAAGAAAGTACCAAATAGCACTTTACAACTTTCGTG
AGTCTTGAGCTGAGCAATTTTATTATTTGTGTAAAAGTATGAAGGCAAAA
TATATCTTTTGTGAAATAAAAGCTACTTCTTTTTTAGACATACAAATGAG
ATGATCAAAAAACTCGAGACAGCTGGCTTGGGATACCATGTCGGGGCTGT
TGATACTTACGAAAAAATCGGTAAAATTTCATATAATTGATGAAAGATTT
TATCGCCTTGTTAAGTTACTGTTTTTCATTTGAGTGAATCATTTAAAGGG
TGCTTGTAATTTTAATTACATTTTTGGAAAACTATTATTTCGGTTTGTCA
AAGTAAATAATGTTCCTGAGTCACTATTTAGTTCCAAATACAAAACGAAA
GCGCCCTGAATATTTTCATGAAATACATTTTTCCAGGTGAAATTCCACTC
AGGCAGTTGGTGTACAGAGTTCATCCTCTCCCAGAGAGCATGAAGCCTTT
GGTTTGGGATTTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044820	XLOC_044820	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_71	supercontig	scaffold_71:551840..557703 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0829654	0	0.228533	0.209594	0	0	0.37728	0.149964	0.0470484	0.104614	0.0905069	0.0339032	0.0654936	0.34601	0.164004	0	0	0.0502383	0.0586066	1.38523	0.618069	0.27339	0.0688319	0.0505497	0.0546447

Blast

[Close]

BLAST of TCONS_00072183 vs. Swiss-Prot (Human)
Match: RN213 (E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1 SV=3)

HSP 1 Score: 358.221 bits (918), Expect = 1.671e-108
Identity = 205/471 (43.52%), Postives = 279/471 (59.24%), Query Frame = 1

Query:   73 LQNLPHTECASPEEALRIRRG------QPAKMIFEESELRSSQFQRVFQYLQRYEANPKSLNDFDYEQNKNIQINVVSVLEVLLRYCGIPDPSWMELRNFVHFFNQNLLDCERSVFTSVYLRAD-FPGFRTFVVTFLLEMARDFATRSLDQNDRNSNNNLV-------------QFKRTWEQSAHPYLFFNTDGNSMTFFGINITPNFDLIDPQTXXXXXXXXXXXXXXXXXDRQMAGDFVNFKTNFNSLSKLNKIKVLCRVMGLPETDFDPDPTYELTIDNMKKMLAIHMRLRCGVPVVLMGETGCGKTTLIRFMCSLCAGPAAGNQRTPKNMLLVKVHGGITMEDIELRVKKAMEMASQNLNSH---TVLFLDEANTTDAIGLIKEVMVDKMLFGKPLAIAQYGLDIIAACNPYRQHTNEMIKKLETAGLGYHVGAVDTYEKIGEIPLRQLVYRVHPLPESMKPLVWDF 1416
            L   P   C  P+E + +         +P   ++E     S  FQR +QYL+R+  N + L+ F Y Q  +++      L+  L +CG+ +PSW ELRNF  F N  L DCE S+F +     D   GF+ FVVTF++ MARDFAT SL  +D++   ++V               ++ WE   HPY+FFN D  +MTF G ++ PN +        +  + I    + + L + +    V F  +F+ L +  K++ LC  +G+P+   DPD TYELT DNM K+LAI MR RCG+PV++MGETGCGKT LI+F+  L  G    N  T K   LVKVHGG T + I  RV++A  +A  N + H   T+LF DEANTT+AI  IKEV+ D M+ G+PLA    GL IIAACNPYR+H+ EMI +LE+AGLGY V   +T +++G IPLRQLVYRVH LP S+ PLVWDF
Sbjct: 2124 LDIFPKVTCRPPKEVIDMELSALRSDTEPGMDLWE---FCSETFQRPYQYLRRFNQN-QDLDTFQY-QEGSVEGTPEECLQHFLFHCGVINPSWSELRNFARFLNYQLRDCEASLFCNPSFIGDTLRGFKKFVVTFMIFMARDFATPSLHTSDQSPGKHMVTMDGVREEDLAPFSLRKRWESEPHPYVFFNDDHTTMTFIGFHLQPNINGSVDAISHLTGKVIKRDVMTRDLYQGLLLQRVPFNVDFDKLPRHKKLERLCLTLGIPQAT-DPDKTYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLRRG--GTNADTIK---LVKVHGGTTADMIYSRVREAENVAFANKDQHQLDTILFFDEANTTEAISCIKEVLCDHMVDGQPLA-EDSGLHIIAACNPYRKHSEEMICRLESAGLGYRVSMEETADRLGSIPLRQLVYRVHALPPSLIPLVWDF 2582

The following BLAST results are available for this feature:

BLAST of TCONS_00072183 vs. Swiss-Prot (Human)

BLAST of TCONS_00072183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RN213	1.671e-108	43.52	E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens...	[more]

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TCONS_00072183 (transcript) - C. hemisphaerica