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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072170 ID=TCONS_00072170|Name=TCONS_00072170|organism=Clytia hemisphaerica|type=transcript|length=2631bp
GAAAAGGGCTAATTTTCATACTTTGGATTTGAATATTTGGTCACTAAAGA
TCATGGAAAAGGGTTCCTTACTTCAATGCAACTTTTATGgcaAACTATAA
GAGAGGGTCTTCGATTCTCAGAAATGAGTCAACATTCAATGATTACTGAA
CAAGCAATCAACCCTTACCTTTCATCGCGTGGAACTTCAAATCATATGAT
TCAGTCTATGGCCCTTGGTAACCATCTGACTGACAATAATAATTCAAGCA
ATAATAATTACTTCAGTGAAATACAAATGGATGACGGGAAATGGACCCGA
CATCAAACACAGATCTTAATTGACACCTGGAAAGAGCATAAAGATATCTT
ATTAAGTACTGGATCAAGCTCAGCTGAACATTTTCGTGTCTGGAAACTCA
TTGCGACTGAAGTTAACAAATTCGCACCACCCAAGAGTCTCCAGCAATGC
AAGAAGAAGTTCCGTAATATACGATACATTTGTAAAATGGCCATGAATAA
TAACAAACAAGAGGGCGGTAAGAAACATTATCCAATGTTTTATTCAGATT
TCCTTGAAATCATTTCCGAGAGTGAGCGCATCAAAGAAGGTGTCAAAATA
GAATCACCCAATGTCGAGGTTTTGAACGATTCAAGCAAAGATGGCGACCT
GTACGGGACTGGATATCAGAATCCGTCACCACAAGACAGCCAATACGACG
AACGATCGTCATCCGAATTAAACACACGTCGCGAAGACGAACTAGACGAG
CGACGTACTCAGCAATCGGGTAACGTTAATAACAGTGAAGGTTCTGGAAG
CTTTAACGGAAGTCCTCAATCCAGAGAGTGTGAGAACGAGTATCAAACAA
CGACGTCACCAAATCATCAACCGACCGTATCCGAAACGAACGTCACAAAC
GAGCGAAGGGAAACCGCCACTGAAAGCCATCATCATTCCTTACAAAACGG
GGATCTCGAGAACGGCCATAGTAGAATCAACGAACGCTTATCAAATTATT
ACTCACACCACGATTCTATGTATCCGCCCATTTATTCGACCAGCTCTNCG
CACCACCCAAGAGTCTCCAGCAATGCAAGAAGAAGTTTCGTAATATACGA
TACATTTGTAAAATGGCCATGAATAATAACAAACAAGAGGGCGGTAAGAA
ACATTATCCAATGTTTTATTCAGATTTCCTTGAAATCATTTCCGAGAGTG
AGCGCATCAAAGAAGGTGTCAAAATAGAATCACCCAATGTCGAGGTTTTG
AACGATTCAAGCAAAGATGGCGACCTGTACGGGACTGGATATCAGAATCC
GTCACCACAAGACAGCCAATACGACGAACGATCGTCATCCGAATTAAACA
CACGTCGCGAAGACGAACTAGACGAGCGACGTACTCAGCAATCGGGCAAC
GTTAATAACAGTGAAGGTTCTGGAAGCTTTAACGGAAGTCCTCAATCCAG
AGAGTGTGAGAACGAGTATCAAACAACGACGTCACCAAATCATCAACCGA
CCGTATCCGAAACGAACGTCACAAACGAGCGAAGGGAAGCCGTCACTGAG
AGCCATCATCATTCCTTACAAAACGGGGATCTCGAGAACGGCCATAGTAG
AATCAACGAACGCTTATCAAATTATTACTCACACCACGATTCTATGTATC
CGCCCATTTATTCGACCAGCTCTGAACATTACATGCGTaagcataaaaat
attgacGTCAGTATAATGGGGCGTGGGTACCCCAGTGCAAAGCGTGTTAA
ACGCGCCATGGATATTTACTCATCACCTGCCCCTGCGCCCTACAAATACG
CAAGCCGACACCATCATAGAGGATATCCGCCCACGATGGCCACAATCGCC
AGTAATTCTTACCCATATCACATTAACAACCACTATTCGACAACACCGCC
GCTTATTCGACCCGTATCTACACCAAAAGATACATCCCCGTCTCCCCGTA
ATACTGTTTCTAGTACCAATAACGTAGCACCGAGTCTGTCCAATGATTCG
TCTTATATGAAAGCAGAGCATACGCATATTAATGACGCACCGCCTGCGCT
GAAATCGTCTCCTGGGTACAAGAATAGAGAGATGCACGCACCTAAAGACT
TAACATTAAGTGAAACTTTGAACTTTTACAATCAACGATTCTTAGATATG
CAAGAGAGACAAACTGAATTATTTAGTGAAATGATTTGTCGGCATGAACA
ATTTCTTTCCAGACTTTTAGAACAACAACGAACGGCTGCTGAAGATGCTC
AAAAAAGAGACAAAGAATTCATGTTAAAATTGATAGAAATGTTCGTTAAG
CAATAGTTTCAAACGTTCTCAactttttagtttttacaattttttcttct
gattttcaatttcttctgatagaatttttctttcgtttttttttttcttt
taaaattttctgctCCAGGTTTTTGAGCAGATTTGTAAATATATTTATCT
AAATGCGATCTTTAAATTGGGTAATTCTTAATTTTTACAGTTGACTTGCC
TGGTTTTTGATACATTCTTAAAACTGTCAGATCGTTGTGTACGACAGGGG
TTTTATTCAAATCTCCCTTGTCAACAAAAATTCTTTAAGAATTCATCTTT
GAACCCTTAAATGAGGCCGTTGGAAAATTAG Run BLAST on NCBI transcript from alignment at scaffold_71:426415..433634- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072170 ID=TCONS_00072170|Name=TCONS_00072170|organism=Clytia hemisphaerica|type=transcript|length=7220bp|location=Sequence derived from alignment at scaffold_71:426415..433634- (Clytia hemisphaerica)
GAAAAGGGCTAATTTTCATACTTTGGATTTGAATATTTGGTCACTAAAGA
TCATGGAAAAGGGTTCCTTACTTCAATGCAACTTTTATGGTATGTAAAAC
TTGGTCTTTACTTTATATTACTTTTAACACCCCTGTCTCACAGCCCCGGT
GAAAGATTGAAATTTTTGGATTGAAATCGCAATTGGGATAAAAATTCTAT
TGTTCCAAGGTTAAAAAATCCAGTGAGGGTGGGGCCCCAGCGAGTCTGTG
ACACAGTGTCTTTTACCACAGATACATAATATTTTCACATACTATTAGAT
GGACATTTCTTCCAAAATATTTCGTGATATTTATCAGACTGTTTTGTTTT
TCAAACTGTACACACGAAATATGGTGATTCTCTCACTCATATATGTACAC
ACTTCGTTTAGGTTTATGTCCCATCTAGGCCAGCTGGTAAAATTTACGAA
GCTAATTGCTAGTCTCATTTTAATTCTTGATCGAACCAACTTGGAAGACT
CCTATGTGAAAGAGATAACTAACTAAGTAATAAGTCTAAGAATAAAATTA
GACAACTTGAATATATCGTGAGATCGGGTAACTTGCATCAGTGGAGGCAA
ACATGCATAGCCCTCAAATGAATGACCTGTCTAGTCATTAAATCAAAACA
AAAATGGTAGAGTAGATATGTGAGCGGAGCTGCGTAGTTCCTTGTTTTTA
AATTTTCCTGCTTTGATTGGTCAGTCATTTGATGGCTATGCAAGTTTCCC
TTCACTGATGAAGTTACCCGATTTCACGGTATATGATATATGATTAGCTG
TTTTGAGAGATTAGAATTATCACCCTAAGAATGCATCTGATGACGTGGCT
GACAGACTTAAGGAATTTTTAAATACAAATTCAATCCAGCCCAGGAAATG
AAGAGGTGACAAGAAAACTTTTTTTCCATTTTGTAACTTTTCCTCCAGTC
TAGTCTATCGAAGAATAGAACACCTTACTGCTCACCATTACGCAATTTTT
AAATACTTTTTGATCCTTGTTTCCCTCCACTCATAGCTATTAAAATTTAA
TTTTCATCTTCGGTTTTACATTGTTATAATATTTTTCCTGGCTTCTTTCT
TCATGGGCGATTAAAAACTTAAATATGACGGATTTTAATTGCTCGTGATG
TTTCACCATTTTAATTTTAAACTCAGCTGACCCATATAAACCGGAAGAAC
TTTTTAATCTGATCAGCACTAGTCTTGTCTTGACTTCAACACTATTTTCA
TGGCAATTTTATTTGCTTAATATTGCTTAAGCTTACTTTGGCATTCACGC
GAAAAAAGAAATGAAGAATTTATTTCTATTTTTCGAAGCTCTTGAGTTGT
TTTCAATAATTACCATAGAAATATAACGTCTTATTAATCAAGCAATGTCT
ACATTAAATTTATAGCATGCAACAGGAACATATACTTCAATATGACGTGT
ATGGTACACAACAAAAGAATAAGAATAAATTTCGTAACGTCTAGATACAC
TTTTTCTTTTTCATAAGAATAATTTTATAAATTGCCAAAAAATAAGAACA
ATCTAAGAACAATGTTGAGCGTGAAATTACTCAATTTCAAGCAATTTAGA
GGTAAAAGTAGTTAAAATTGGATAAAAATCCTAAAATACCTCAACTGAAT
CCAATAAATAAGAACAGAATAAAAACAATACGAGACTAAAAGTGCCAAAA
AATAAGAACAGAGCCTCGTCAAAAGTTTACTGGTTCTTATAAAAATCAAG
TGTAAGCTATAATAACTGAAATAACTAAATCGGAAGACACTTGGCTCTTT
AGGAAACTTCACATATGGACTTTAGAAAATCCCGAATAATAGAGCACTCA
TCATGCTTGACGCCAAATTAATTACTATTACCAATTTCAACTTAATTGTA
TTGGATCCGGTCTTTCTTTAGGCTGTTGCTTGTTCACCGTCATTAATCAG
CCAATTTTTGATAATTTCACTTTGGCTTATTTACATTTTTTTGTATTTGT
AGTGGTTGTTTTCTTTTTTCTGGTGGACGCCAGACATTTGATTGTTGATG
TTAATGTTGACGGCATGATGATGTTTTTAAGCTTAGAACTGAAAAATTTA
AGAATATCCGAAAGGCTCAAAATTTAACGTTCTTTTAATAGGAAAAGTTT
ATAATGCATTAGAAAGTTGATGGATTCAGGTTGGTCTTGATTGATTAAAA
AAAAGGAATTTCTATCACTTTGTTTTTCATGACGTAACTTTGAAACGAAT
ATTCTGCTTTGCGAGTAGACGGTTATGCAGCTCGGCTAGGTTTTTTTGGG
GACGATTTTTTTGACCCGCGGAGGAGGGTCATGGGTTACGGGGACCGTGC
CACTTGTAAGCGTCACTTTTTACCGGCCTGAAAATATTTGACAGGTTCCG
AATTCACTCATGTCTTTAGTTTTGATAGCTGTATCTGATAGAATATTGAT
TTAATTTCGAGGCTCGTTTATTTTTCTTAACAAAATTTAATTCTTTTCTA
ATCAACTCTTTCAATTTTGATCAACTATTTCAAGTTTTATTTATAACAAA
AATTATTCAAGTGGAAAAAACGAAGAAGAATAACGCTTGCCACGAAAGAA
AAAACTAGAAAATCGGGAAGCTTAAAAAACATGCAAAACGAAAAGTTCAA
TGCATGATTTGACAGTTTCAATACTGAACCAACTGTAAACAAATTCATCT
CAAACATAAACTTAAAAGTGAAAAAAAAATTAGAAATCAGTTTCAAGAGA
AAATCATGATATGAATATAAGCAAAGTACTGGATATCCTTGGCAACTTAA
AAAAATTGAAACAAGATCGGTTATTTGTTTGTGCAAAGACTGTCAAAAAA
TCAAAAGATGTTCGGCACATTTTGAGAATTTGAGAACAAGGCCACCTATT
GTTAAGATGCTGTGCTATAGGTTAAACATGCGCAAAAATAAGTTTTTAAG
GAAGTGAGAACATTTTTGTGATAAACATATACCATGGTCTACTTGTCTTG
ATCTAGCTTTCAATTACTTTTATTTTCAATTTCAATTTTCAATCTACTTA
GTCGAATACTTTTTTCTTATAAATGATGTTTTTTTAAACGTTACATTGTA
TATATTGAATGCACTTTTCTCGTTATTTACACGGTAAGGTTTACTTAATT
ATTTTCATTATCAAAGGGAGAGGTAATTTTGAGTGTCTTAGATTCAAATC
TAAATTTAGCAAAGCAGTAAAATACCTAGGCTTGAAGACGGTATGAGAAT
TTTCTAAGAATTTCTATCTAGGTCAAACCAAAACAAGCCTTATGAAATGA
AATAACCTTTCTTATTTACTGCTCGATGCCCAATATGAGATGAGTTTTGT
TTTCACGCAAATATATGGTCTCTTCGCATTTGAAAGAACTCGAAAAAATT
TCTCTAGCTCTTTTCGTTTTGAACCTACGGCTAAGCGGTTCTTGAGCACT
GAATTTTGGCAATCTTCTGGCTATGAAACTGACAAAGTATGGCTATTTAT
ATTCCTTTTTACGTCATTACGATAAATCTTATTTAATAATATCTAGGGTT
TAATTGTTCATAACTGTTGTGCATCTAGGTCTGATTCCTGATTGACTACT
GTTGATATCTTTGGAAAATGGAAGTTTTGATTTGTGGTTCACCAAGTGTT
TTTTATCATTACTTTTTAGACTAAGATTCTGCCAATCATATTAGTTTTGC
CTTTACGATTTACTGTAGTTGTTCGTTGTTCGTTGTTTTTACTTAATATG
TAATAGTCGTATGCAATGCATAGCATAAAATGCTTGTTCCTATTCCTAAC
TCATCAAACTCTTGATAAGTTTAGCATGTGTAAAAAAGTCTCAATCTGTA
GTGAGACATTGTCACAATGGGCTCTTCCAGAAAATGTCCGTACATGGGGG
GGGATAGAGGATATATTGTCCAGGGGTAATTTGGGTTGTCCGAAGGGTCA
ACCGATGCTTGTCCGGGGGTTAAACCTGTTGTCCGGGGGGGGGGGGCAAA
AAATCACTTTGTCCGGGGGGTAAATCACTGATAATTGTTATATCCTCCAC
CCCTCATATTCAAATTTTTTCTGGAAAAGCCCAATGTCAATGCCTGTCGA
TTATCAAGATCATCTGTTCATCATGCCAAAATAGTAAAAAATATGTAGCC
CAAATCAGACATCACGCCTTAATTCCTTACCTACCAGGTGTTAGGGTCTT
AGTAAATGTATATACAGTTGACTCTCTAATTCGATATTCAAGGGACTAAA
AATGTTCATTGAATCATAGAAAGACTCGAAACAAAAAGTGTTTCATATAT
TAATCTCTAACTGAGGGGACAAATATTTTAGTTCGAATATTAGAGGTTTA
CTGTAAAGTTGACTGTACTTACTAATTGGCACAGAGAATAACTTTCAAAC
AGTACACACTTTTTTGTAAGAATATACTTTATAAGAATATTAATGGAAAG
ACAAATTTTTGCCTGAGGTATGTATCACATGCTAGATTTTGGCTGTGATT
GAATCCAAACCTGAGAATACCCTAAGAATATTGATTTTCCGCAAAAAGCT
AAAAAAAAATCATAATGAATTGAAAGAACACCATTCTTATAAACAAACGT
GTATTTTATGCCAAAATATTAATTAACAAATATATTATCTTGAACTAATC
TCTCCTATTCTTCTTTTTATTTTTTCAGGCAAACTATAAGAGAGGGTCTT
CGATTCTCAGAAATGAGTCAACATTCAATGATTACTGAACAAGCAATCAA
CCCTTACCTTTCATCGCGTGGAACTTCAAATCATATGATTCAGTCTATGG
CCCTTGGTAACCATCTGACTGACAATAATAATTCAAGCAATAATAATTAC
TTCAGTGAAATACAAATGGATGACGGGAAATGGACCCGACATCAAACACA
GATCTTAATTGACACCTGGAAAGAGCATAAAGATATCTTATTAAGTACTG
GATCAAGCTCAGCTGAACATTTTCGTGTCTGGAAACTCATTGCGACTGAA
GTTAACAAATTCGCACCACCCAAGAGTCTCCAGCAATGCAAGAAGAAGTT
CCGTAATATACGATACATTTGTAAAATGGCCATGAATAATAACAAACAAG
AGGGCGGTAAGAAACATTATCCAATGTTTTATTCAGATTTCCTTGAAATC
ATTTCCGAGAGTGAGCGCATCAAAGAAGGTGTCAAAATAGAATCACCCAA
TGTCGAGGTTTTGAACGATTCAAGCAAAGATGGCGACCTGTACGGGACTG
GATATCAGAATCCGTCACCACAAGACAGCCAATACGACGAACGATCGTCA
TCCGAATTAAACACACGTCGCGAAGACGAACTAGACGAGCGACGTACTCA
GCAATCGGGTAACGTTAATAACAGTGAAGGTTCTGGAAGCTTTAACGGAA
GTCCTCAATCCAGAGAGTGTGAGAACGAGTATCAAACAACGACGTCACCA
AATCATCAACCGACCGTATCCGAAACGAACGTCACAAACGAGCGAAGGGA
AACCGCCACTGAAAGCCATCATCATTCCTTACAAAACGGGGATCTCGAGA
ACGGCCATAGTAGAATCAACGAACGCTTATCAAATTATTACTCACACCAC
GATTCTATGTATCCGCCCATTTATTCGACCAGCTCTNCGCACCACCCAAG
AGTCTCCAGCAATGCAAGAAGAAGTTTCGTAATATACGATACATTTGTAA
AATGGCCATGAATAATAACAAACAAGAGGGCGGTAAGAAACATTATCCAA
TGTTTTATTCAGATTTCCTTGAAATCATTTCCGAGAGTGAGCGCATCAAA
GAAGGTGTCAAAATAGAATCACCCAATGTCGAGGTTTTGAACGATTCAAG
CAAAGATGGCGACCTGTACGGGACTGGATATCAGAATCCGTCACCACAAG
ACAGCCAATACGACGAACGATCGTCATCCGAATTAAACACACGTCGCGAA
GACGAACTAGACGAGCGACGTACTCAGCAATCGGGCAACGTTAATAACAG
TGAAGGTTCTGGAAGCTTTAACGGAAGTCCTCAATCCAGAGAGTGTGAGA
ACGAGTATCAAACAACGACGTCACCAAATCATCAACCGACCGTATCCGAA
ACGAACGTCACAAACGAGCGAAGGGAAGCCGTCACTGAGAGCCATCATCA
TTCCTTACAAAACGGGGATCTCGAGAACGGCCATAGTAGAATCAACGAAC
GCTTATCAAATTATTACTCACACCACGATTCTATGTATCCGCCCATTTAT
TCGACCAGCTCTGAACATTACATGCGTAAGCATAAAAATATTGACGTCAG
TATAATGGGGCGTGGGTACCCCAGTGCAAAGCGTGTTAAACGCGCCATGG
ATATTTACTCATCACCTGCCCCTGCGCCCTACAAATACGCAAGCCGACAC
CATCATAGAGGATATCCGCCCACGATGGCCACAATCGCCAGTAATTCTTA
CCCATATCACATTAACAACCACTATTCGACAACACCGCCGCTTATTCGAC
CCGTATCTACACCAAAAGATACATCCCCGTCTCCCCGTAATACTGTTTCT
AGTACCAATAACGTAGCACCGAGTCTGTCCAATGATTCGTCTTATATGAA
AGCAGAGCATACGCATATTAATGACGCACCGCCTGCGCTGAAATCGTCTC
CTGGGTACAAGAATAGAGAGATGCACGCACCTAAAGACTTAACATTAAGT
GAAACTTTGAACTTTTACAATCAACGATTCTTAGATATGCAAGAGAGACA
AACTGAATTATTTAGTGAAATGATTTGTCGGCATGAACAATTTCTTTCCA
GACTTTTAGAACAACAACGAACGGCTGCTGAAGATGCTCAAAAAAGAGAC
AAAGAATTCATGTTAAAATTGATAGAAATGTTCGTTAAGCAATAGTTTCA
AACGTTCTCAACTTTTTAGTTTTTACAATTTTTTCTTCTGATTTTCAATT
TCTTCTGATAGAATTTTTCTTTCGTTTTTTTTTTTCTTTTAAAATTTTCT
GCTCCAGGTTTTTGAGCAGATTTGTAAATATATTTATCTAAATGCGATCT
TTAAATTGGGTAATTCTTAATTTTTACAGTTGACTTGCCTGGTTTTTGAT
ACATTCTTAAAACTGTCAGATCGTTGTGTACGACAGGGGTTTTATTCAAA
TCTCCCTTGTCAACAAAAATTCTTTAAGAATTCATCTTTGAACCCTTAAA
TGAGGCCGTTGGAAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072170-exon-scaffold_71-1575043694:433546..433634 | TCONS_00072170-exon-scaffold_71-1575043694:433546..433634 | Clytia hemisphaerica | exon |
| TCONS_00072170-exon-scaffold_71-1575043694:426415..428956 | TCONS_00072170-exon-scaffold_71-1575043694:426415..428956 | Clytia hemisphaerica | exon |
| TCONS_00072170-exon-scaffold_71-1510915933:433546..433634 | TCONS_00072170-exon-scaffold_71-1510915933:433546..433634 | Clytia hemisphaerica | exon |
| TCONS_00072170-exon-scaffold_71-1510915933:426415..428956 | TCONS_00072170-exon-scaffold_71-1510915933:426415..428956 | Clytia hemisphaerica | exon |
| TCONS_00072170-exon-scaffold_71-1491911889:433546..433634 | TCONS_00072170-exon-scaffold_71-1491911889:433546..433634 | Clytia hemisphaerica | exon |
| TCONS_00072170-exon-scaffold_71-1491911889:426415..428956 | TCONS_00072170-exon-scaffold_71-1491911889:426415..428956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:426415..433634 - |
Blast
The following BLAST results are available for this feature:
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