TCONS_00072168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072168
Unique NameTCONS_00072168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072168 ID=TCONS_00072168|Name=TCONS_00072168|organism=Clytia hemisphaerica|type=transcript|length=2753bp
AACCAAAACAAGCCTTATGAAATGAAATAACCTTTCTTATTTACTGCTCG
ATGCCCAATATGAGATGAGTTTTGTTTTCACGCAAATATATGGTCTCTTC
GCATTTGAAAGAACTCGAAAAAATTTCTCTAGCTCTTTTCGTTTTGAACC
TACGGCTAAGCGGTTCTTGAGCACTGAATTTTGGCAATCTTCTGGCTATG
AAACTGACAAAgcaAACTATAAGAGAGGGTCTTCGATTCTCAGAAATGAG
TCAACATTCAATGATTACTGAACAAGCAATCAACCCTTACCTTTCATCGC
GTGGAACTTCAAATCATATGATTCAGTCTATGGCCCTTGGTAACCATCTG
ACTGACAATAATAATTCAAGCAATAATAATTACTTCAGTGAAATACAAAT
GGATGACGGGAAATGGACCCGACATCAAACACAGATCTTAATTGACACCT
GGAAAGAGCATAAAGATATCTTATTAAGTACTGGATCAAGCTCAGCTGAA
CATTTTCGTGTCTGGAAACTCATTGCGACTGAAGTTAACAAATTCGCACC
ACCCAAGAGTCTCCAGCAATGCAAGAAGAAGTTCCGTAATATACGATACA
TTTGTAAAATGGCCATGAATAATAACAAACAAGAGGGCGGTAAGAAACAT
TATCCAATGTTTTATTCAGATTTCCTTGAAATCATTTCCGAGAGTGAGCG
CATCAAAGAAGGTGTCAAAATAGAATCACCCAATGTCGAGGTTTTGAACG
ATTCAAGCAAAGATGGCGACCTGTACGGGACTGGATATCAGAATCCGTCA
CCACAAGACAGCCAATACGACGAACGATCGTCATCCGAATTAAACACACG
TCGCGAAGACGAACTAGACGAGCGACGTACTCAGCAATCGGGTAACGTTA
ATAACAGTGAAGGTTCTGGAAGCTTTAACGGAAGTCCTCAATCCAGAGAG
TGTGAGAACGAGTATCAAACAACGACGTCACCAAATCATCAACCGACCGT
ATCCGAAACGAACGTCACAAACGAGCGAAGGGAAACCGCCACTGAAAGCC
ATCATCATTCCTTACAAAACGGGGATCTCGAGAACGGCCATAGTAGAATC
AACGAACGCTTATCAAATTATTACTCACACCACGATTCTATGTATCCGCC
CATTTATTCGACCAGCTCTNCGCACCACCCAAGAGTCTCCAGCAATGCAA
GAAGAAGTTTCGTAATATACGATACATTTGTAAAATGGCCATGAATAATA
ACAAACAAGAGGGCGGTAAGAAACATTATCCAATGTTTTATTCAGATTTC
CTTGAAATCATTTCCGAGAGTGAGCGCATCAAAGAAGGTGTCAAAATAGA
ATCACCCAATGTCGAGGTTTTGAACGATTCAAGCAAAGATGGCGACCTGT
ACGGGACTGGATATCAGAATCCGTCACCACAAGACAGCCAATACGACGAA
CGATCGTCATCCGAATTAAACACACGTCGCGAAGACGAACTAGACGAGCG
ACGTACTCAGCAATCGGGCAACGTTAATAACAGTGAAGGTTCTGGAAGCT
TTAACGGAAGTCCTCAATCCAGAGAGTGTGAGAACGAGTATCAAACAACG
ACGTCACCAAATCATCAACCGACCGTATCCGAAACGAACGTCACAAACGA
GCGAAGGGAAGCCGTCACTGAGAGCCATCATCATTCCTTACAAAACGGGG
ATCTCGAGAACGGCCATAGTAGAATCAACGAACGCTTATCAAATTATTAC
TCACACCACGATTCTATGTATCCGCCCATTTATTCGACCAGCTCTGAACA
TTACATGCGTaagcataaaaatattgacGTCAGTATAATGGGGCGTGGGT
ACCCCAGTGCAAAGCGTGTTAAACGCGCCATGGATATTTACTCATCACCT
GCCCCTGCGCCCTACAAATACGCAAGCCGACACCATCATAGAGGATATCC
GCCCACGATGGCCACAATCGCCAGTAATTCTTACCCATATCACATTAACA
ACCACTATTCGACAACACCGCCGCTTATTCGACCCGTATCTACACCAAAA
GATACATCCCCGTCTCCCCGTAATACTGTTTCTAGTACCAATAACGTAGC
ACCGAGTCTGTCCAATGATTCGTCTTATATGAAAGCAGAGCATACGCATA
TTAATGACGCACCGCCTGCGCTGAAATCGTCTCCTGGGTACAAGAATAGA
GAGATGCACGCACCTAAAGACTTAACATTAAGTGAAACTTTGAACTTTTA
CAATCAACGATTCTTAGATATGCAAGAGAGACAAACTGAATTATTTAGTG
AAATGATTTGTCGGCATGAACAATTTCTTTCCAGACTTTTAGAACAACAA
CGAACGGCTGCTGAAGATGCTCAAAAAAGAGACAAAGAATTCATGTTAAA
ATTGATAGAAATGTTCGTTAAGCAATAGTTTCAAACGTTCTCAacttttt
agtttttacaattttttcttctgattttcaatttcttctgatagaatttt
tctttcgtttttttttttcttttaaaattttctgctCCAGGTTTTTGAGC
AGATTTGTAAATATATTTATCTAAATGCGATCTTTAAATTGGGTAATTCT
TAATTTTTACAGTTGACTTGCCTGGTTTTTGATACATTCTTAAAACTGTC
AGATCGTTGTGTACGACAGGGGTTTTATTCAAATCTCCCTTGTCAACAAA
AATTCTTTAAGAATTCATCTTTGAACCCTTAAATGAGGCCGTTGGAAAAT
TAG
Run BLAST on NCBI

transcript from alignment at scaffold_71:426415..430359-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072168 ID=TCONS_00072168|Name=TCONS_00072168|organism=Clytia hemisphaerica|type=transcript|length=3945bp|location=Sequence derived from alignment at scaffold_71:426415..430359- (Clytia hemisphaerica)
AACCAAAACAAGCCTTATGAAATGAAATAACCTTTCTTATTTACTGCTCG
ATGCCCAATATGAGATGAGTTTTGTTTTCACGCAAATATATGGTCTCTTC
GCATTTGAAAGAACTCGAAAAAATTTCTCTAGCTCTTTTCGTTTTGAACC
TACGGCTAAGCGGTTCTTGAGCACTGAATTTTGGCAATCTTCTGGCTATG
AAACTGACAAAGTATGGCTATTTATATTCCTTTTTACGTCATTACGATAA
ATCTTATTTAATAATATCTAGGGTTTAATTGTTCATAACTGTTGTGCATC
TAGGTCTGATTCCTGATTGACTACTGTTGATATCTTTGGAAAATGGAAGT
TTTGATTTGTGGTTCACCAAGTGTTTTTTATCATTACTTTTTAGACTAAG
ATTCTGCCAATCATATTAGTTTTGCCTTTACGATTTACTGTAGTTGTTCG
TTGTTCGTTGTTTTTACTTAATATGTAATAGTCGTATGCAATGCATAGCA
TAAAATGCTTGTTCCTATTCCTAACTCATCAAACTCTTGATAAGTTTAGC
ATGTGTAAAAAAGTCTCAATCTGTAGTGAGACATTGTCACAATGGGCTCT
TCCAGAAAATGTCCGTACATGGGGGGGGATAGAGGATATATTGTCCAGGG
GTAATTTGGGTTGTCCGAAGGGTCAACCGATGCTTGTCCGGGGGTTAAAC
CTGTTGTCCGGGGGGGGGGGGCAAAAAATCACTTTGTCCGGGGGGTAAAT
CACTGATAATTGTTATATCCTCCACCCCTCATATTCAAATTTTTTCTGGA
AAAGCCCAATGTCAATGCCTGTCGATTATCAAGATCATCTGTTCATCATG
CCAAAATAGTAAAAAATATGTAGCCCAAATCAGACATCACGCCTTAATTC
CTTACCTACCAGGTGTTAGGGTCTTAGTAAATGTATATACAGTTGACTCT
CTAATTCGATATTCAAGGGACTAAAAATGTTCATTGAATCATAGAAAGAC
TCGAAACAAAAAGTGTTTCATATATTAATCTCTAACTGAGGGGACAAATA
TTTTAGTTCGAATATTAGAGGTTTACTGTAAAGTTGACTGTACTTACTAA
TTGGCACAGAGAATAACTTTCAAACAGTACACACTTTTTTGTAAGAATAT
ACTTTATAAGAATATTAATGGAAAGACAAATTTTTGCCTGAGGTATGTAT
CACATGCTAGATTTTGGCTGTGATTGAATCCAAACCTGAGAATACCCTAA
GAATATTGATTTTCCGCAAAAAGCTAAAAAAAAATCATAATGAATTGAAA
GAACACCATTCTTATAAACAAACGTGTATTTTATGCCAAAATATTAATTA
ACAAATATATTATCTTGAACTAATCTCTCCTATTCTTCTTTTTATTTTTT
CAGGCAAACTATAAGAGAGGGTCTTCGATTCTCAGAAATGAGTCAACATT
CAATGATTACTGAACAAGCAATCAACCCTTACCTTTCATCGCGTGGAACT
TCAAATCATATGATTCAGTCTATGGCCCTTGGTAACCATCTGACTGACAA
TAATAATTCAAGCAATAATAATTACTTCAGTGAAATACAAATGGATGACG
GGAAATGGACCCGACATCAAACACAGATCTTAATTGACACCTGGAAAGAG
CATAAAGATATCTTATTAAGTACTGGATCAAGCTCAGCTGAACATTTTCG
TGTCTGGAAACTCATTGCGACTGAAGTTAACAAATTCGCACCACCCAAGA
GTCTCCAGCAATGCAAGAAGAAGTTCCGTAATATACGATACATTTGTAAA
ATGGCCATGAATAATAACAAACAAGAGGGCGGTAAGAAACATTATCCAAT
GTTTTATTCAGATTTCCTTGAAATCATTTCCGAGAGTGAGCGCATCAAAG
AAGGTGTCAAAATAGAATCACCCAATGTCGAGGTTTTGAACGATTCAAGC
AAAGATGGCGACCTGTACGGGACTGGATATCAGAATCCGTCACCACAAGA
CAGCCAATACGACGAACGATCGTCATCCGAATTAAACACACGTCGCGAAG
ACGAACTAGACGAGCGACGTACTCAGCAATCGGGTAACGTTAATAACAGT
GAAGGTTCTGGAAGCTTTAACGGAAGTCCTCAATCCAGAGAGTGTGAGAA
CGAGTATCAAACAACGACGTCACCAAATCATCAACCGACCGTATCCGAAA
CGAACGTCACAAACGAGCGAAGGGAAACCGCCACTGAAAGCCATCATCAT
TCCTTACAAAACGGGGATCTCGAGAACGGCCATAGTAGAATCAACGAACG
CTTATCAAATTATTACTCACACCACGATTCTATGTATCCGCCCATTTATT
CGACCAGCTCTNCGCACCACCCAAGAGTCTCCAGCAATGCAAGAAGAAGT
TTCGTAATATACGATACATTTGTAAAATGGCCATGAATAATAACAAACAA
GAGGGCGGTAAGAAACATTATCCAATGTTTTATTCAGATTTCCTTGAAAT
CATTTCCGAGAGTGAGCGCATCAAAGAAGGTGTCAAAATAGAATCACCCA
ATGTCGAGGTTTTGAACGATTCAAGCAAAGATGGCGACCTGTACGGGACT
GGATATCAGAATCCGTCACCACAAGACAGCCAATACGACGAACGATCGTC
ATCCGAATTAAACACACGTCGCGAAGACGAACTAGACGAGCGACGTACTC
AGCAATCGGGCAACGTTAATAACAGTGAAGGTTCTGGAAGCTTTAACGGA
AGTCCTCAATCCAGAGAGTGTGAGAACGAGTATCAAACAACGACGTCACC
AAATCATCAACCGACCGTATCCGAAACGAACGTCACAAACGAGCGAAGGG
AAGCCGTCACTGAGAGCCATCATCATTCCTTACAAAACGGGGATCTCGAG
AACGGCCATAGTAGAATCAACGAACGCTTATCAAATTATTACTCACACCA
CGATTCTATGTATCCGCCCATTTATTCGACCAGCTCTGAACATTACATGC
GTAAGCATAAAAATATTGACGTCAGTATAATGGGGCGTGGGTACCCCAGT
GCAAAGCGTGTTAAACGCGCCATGGATATTTACTCATCACCTGCCCCTGC
GCCCTACAAATACGCAAGCCGACACCATCATAGAGGATATCCGCCCACGA
TGGCCACAATCGCCAGTAATTCTTACCCATATCACATTAACAACCACTAT
TCGACAACACCGCCGCTTATTCGACCCGTATCTACACCAAAAGATACATC
CCCGTCTCCCCGTAATACTGTTTCTAGTACCAATAACGTAGCACCGAGTC
TGTCCAATGATTCGTCTTATATGAAAGCAGAGCATACGCATATTAATGAC
GCACCGCCTGCGCTGAAATCGTCTCCTGGGTACAAGAATAGAGAGATGCA
CGCACCTAAAGACTTAACATTAAGTGAAACTTTGAACTTTTACAATCAAC
GATTCTTAGATATGCAAGAGAGACAAACTGAATTATTTAGTGAAATGATT
TGTCGGCATGAACAATTTCTTTCCAGACTTTTAGAACAACAACGAACGGC
TGCTGAAGATGCTCAAAAAAGAGACAAAGAATTCATGTTAAAATTGATAG
AAATGTTCGTTAAGCAATAGTTTCAAACGTTCTCAACTTTTTAGTTTTTA
CAATTTTTTCTTCTGATTTTCAATTTCTTCTGATAGAATTTTTCTTTCGT
TTTTTTTTTTCTTTTAAAATTTTCTGCTCCAGGTTTTTGAGCAGATTTGT
AAATATATTTATCTAAATGCGATCTTTAAATTGGGTAATTCTTAATTTTT
ACAGTTGACTTGCCTGGTTTTTGATACATTCTTAAAACTGTCAGATCGTT
GTGTACGACAGGGGTTTTATTCAAATCTCCCTTGTCAACAAAAATTCTTT
AAGAATTCATCTTTGAACCCTTAAATGAGGCCGTTGGAAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044819XLOC_044819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072168-exon-scaffold_71-1575043694:430149..430359TCONS_00072168-exon-scaffold_71-1575043694:430149..430359Clytia hemisphaericaexon
TCONS_00072168-exon-scaffold_71-1575043694:426415..428956TCONS_00072168-exon-scaffold_71-1575043694:426415..428956Clytia hemisphaericaexon
TCONS_00072168-exon-scaffold_71-1510915933:430149..430359TCONS_00072168-exon-scaffold_71-1510915933:430149..430359Clytia hemisphaericaexon
TCONS_00072168-exon-scaffold_71-1510915933:426415..428956TCONS_00072168-exon-scaffold_71-1510915933:426415..428956Clytia hemisphaericaexon
TCONS_00072168-exon-scaffold_71-1491911889:430149..430359TCONS_00072168-exon-scaffold_71-1491911889:430149..430359Clytia hemisphaericaexon
TCONS_00072168-exon-scaffold_71-1491911889:426415..428956TCONS_00072168-exon-scaffold_71-1491911889:426415..428956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:426415..430359 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.195656	0	0.710342	6.07121e-10	3.79598	0.894768	2.63651	1.10889	0.883941	1.40845	2.04028	1.58827	3.30695	7.13914	2.01729	1.0999	0	0	0.570085	2.0235	3.015e-07	0.570957	1.60875e-08	0.648816	0	0.439719	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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