TCONS_00072167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072167
Unique NameTCONS_00072167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072167 ID=TCONS_00072167|Name=TCONS_00072167|organism=Clytia hemisphaerica|type=transcript|length=2488bp
GGCCACTATAAAAAGGGTAACATTCACAAACAAATTCATTCACACTCACT
TCAAACCAGAACAACTAAGGAAAGTGCAAAACTTCAATAACATTGGAAAA
TTCCAACTTAACATTCTGTCTAGTGAtggatttttacaagtttttgacAT
TCCTTATTTGCTTGAGTTCGGTTACGTTATGCTTTGGAGCCGGAATTCCA
ATTGATGTCGAATGTTCAGCCAGTAGTCTAAAAGCAATATTCAATATTAC
TGACCTTGATGCACAACTTCTGCCATATTCAATCAAATTCCTTGGAAACG
ACACGTGTGAATCAATCACTGCCGCATCCACTAATCACATTAAAGATGGA
AAAACTTGGATTGCAACTAACTATACAGATTGTGGAACAAAAGCGTATCA
CCAGGGAAACCAAATCGCTTTCGAACAAACAATTCTCATAGAATATGGAT
CTCGATCACAACAATCACTTGTCTACAGATATTTTAACTCTTCGTACACA
GTTAAATGTGTTTTGGACCGTAGTATCACAACCAATCTAACAATTGATGT
TATAGATCGCCAAACAGATCAACAAGTTAATGGTgattcaaaattcaaac
ttcAACTGAAGGCTATAGATGCTGGCACGAATAATGAAATTCAAGGTGTG
gcaaaaattggagaaaaattaaaatttgaaatcaatctaCAAGATCCGAC
AAATACTGTCAAAACTTCACCTCAAAACTGTTATGCTACAAGATATAATG
GAACTGGACGGTACAACCTCATTGCAAATAGatgtgCTGGACAAGACGAC
AATACAACTCAAATCACATCGGCGAATAACGCTATCCATACCTTCTCTTG
GGAATTATTGGCGTTCAGATATTTCGGAAGTTCAGATGCAGTCATCATTG
TTTGTGAAGTTTTGATTTGCAAGAATGATCCTTTTGCAATTTTGAGTGAA
GAATGTAAAAGATGCGGACAGATACGGACAAGATACGGACAAGATAGACG
ACGAAGAGATGAAGtttattcaaaagaaaacacGATTCTTGAAAGATCGA
CCATTCAAACAGCTCCAATTTACATTATCGAAAGAGAAGAAGCACCGGCC
GTTGTAGTGAAGAGTGACAACTTTTTGGCAGAGCCAGCAGGAATATCAAT
CATTGTGATCCTTGCATTGTTTATGTTGGTCATTTGTTCTGTTCTTCTTA
AAAGAACATTTTGTGCCGCTGCAATTGCATCCGATAAAAAGAATGTTGAA
AGCGGATTCGATAATCCAGCCATGCAGtgaaaaagaataaaacaaGAATG
ATGTAGAAGTAATgttgactgaatttttttaaactaatttaaagtttaaa
aaaaaaacaatcgaaaCAATATTCAAAAAGAACTGCACTAATTTAGAATT
TGTATAATCTCAACACAGCACAGTCatatttttatctaaaattatCTAAT
TGTAGCTTCATATACCCTCGTTGTAATATTTTTGCTGAGCAGAATTAGTG
TAGTGTGATAGGGTCGTAATGTCCCCATAGCATACAATCTTAGACAACAA
CCaatattttagtattttttcaaagacaaatttatcatAAAGATTGCTTA
TAATTATAAATTTACTTTTAATAATTCCATATACttttgaactttaaaaa
aacattgttttaaTGAAATTCACTGATcagaaatgggcttttccagaaaa
aaattgaatatggggggtggaggataaaacaattttcagtgatttacccc
ccggacaaagtgacttttagCCCCCCCGGACAGCGGGTTTTACCctccgg
acaagcatcagttgacccccggacaacccaaattacccccggacagaaaC
AATTTACCctccggacaaggcaaattttgatgatttttcgctactccccg
gacaatatatcctccaccccccattcacggacattttctggaagagccta
aTATAAGTGCTTTGAAAGAGGTTCTACTACCTTTTTCCATTGAGAAAAGT
CCTCACTCCCTTTTTAATTTCCCCTTCCTACCCATTTATATTGAGCGATT
TTGGAAAAGCTTCTTTAAAAACAAGAGGCAGAAGGGGTACACCGTTTAAC
TTTGAATTCGtgaaatataataccaataagtTAGTGAGTGTACACAATTT
ATAATAAGATACAGTCAAACTCCGGAGGGGAGGGGTacacatacccgtac
ccttcacttTCCTAAGTACCACACCCTCCCCCCAGGCGGTAAAACTAATA
AATACAAGCAGATAACAAACCTTTTCACCGTCTGTATTGAGCATAGTTTA
AGTTTTCCATCGATTCATTTGCCAACAAATTTGTCAAAAAGCTTTGTCTT
CACCAAACACATAATCCATGATCAAATCGTGATCTttctgtaatattttt
ttttcataatttctatttttaattttatcctAGAGcatctgaaaataaat
aaataaatttataaatgaAACAAATAAATAACTGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_71:408825..413954-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072167 ID=TCONS_00072167|Name=TCONS_00072167|organism=Clytia hemisphaerica|type=transcript|length=5130bp|location=Sequence derived from alignment at scaffold_71:408825..413954- (Clytia hemisphaerica)
GGCCACTATAAAAAGGGTAACATTCACAAACAAATTCATTCACACTCACT
TCAAACCAGAACAACTAAGGAAAGTGCAAAACTTCAATAACATTGGAAAA
TTCCAACTTAACATTCTGTCTAGTGATGGATTTTTACAAGTTTTTGACAT
TCCTTATTTGCTTGAGTTCGGTTACGTTATGCTTTGGAGCCGGTAAGTAA
GGATTTTCTTTTATTTGTAATCACACAAATTTAATACAAATTTCAGGGTA
TCTTTATTATCATAATGATGAATTTTTGGCTGATATTACCAATAAGACGG
GTGTCAAGCGGGTCTGAAATCGGGGGGGGGGGGNTAAAAAAGTTTAAATC
TTCTTGATTGAAATCGTATGAAGAAAAAAAAATTCATTCAACAAAAGTAA
GGAACCATATACTGTTATCGTTCTCTTTCACTGTTTCAGAAAATGAAGCA
ATTTTTAACGGAGTCCGATATTACTTCAGTCCAACGCCTTTGTCTTGGCA
AAACGCAGAAATTGATTGCATTAACCGCGGAGGTCATCTTACAAGTGTGC
ACTCAAAAGCTGAAAATGATTTCTTGACAGACCAAAGTATATCAAGATTT
GGAGGTGTAAGCCTTTGGTATGGTGGGATTAGAATTAACAATGTCTTTAC
TTGGTCCGATAGAACACCTTTTACGACAACATTCTGGGCTTTAGGAGAAC
CTAATGGTCCACATGTTGAAAACTGTTTACATATGACAGCTGACCATATT
GGTCAGTGGAATGATCTTCGTTGTATTCCAGAGCTTAGATATGTTTGTAA
ATTAGGTGAAGGTGAGTGATGGGCTTTCATATTAACATACAATCAACTCT
CAATCTAATTCGAACCTCTATTACAATTTTTTTTTATAAGCAAGTGTATG
CCTCTTGGTCAGGCTCGTGTATGCTTAAGTTCTTAAAGCATCCAGGCATA
GCTTATGCTTATTATATGCTTATGAATCATGCTTATGATTCACCCCGAGC
AAAGTTGTAGTTAAATTTGTTCAGATTTCGGGAGCAGTGGAATGTAGCTA
GCCGTGGAATGTCTTTTTTACTTGACCGTAGAGGTCAAACCTTTTTAAAC
AGATAAAAAATGACAAATTGAAAAATATCCCAGGCTGACATATTTGCTTA
TGTTATGCGTAGGAATTCTGCAAATCTGAGCCTTCATATGCTTATAAGTG
TTATGCTTATAAAAAAACATTTCTTTAATTCTAACTACCATAAATGGCGG
CCCTCCCATAAATAAAGAAAATGGATAAAAGTTCATTTATGATCCCTCCT
TTCTCAGATCACCGATTACTAGCCTGCGTTCGTTTGTTACTTGAAATCCC
AAGTTCTAACATCAGAGTACAGGAAAATTAAGTATAACTATTTTTTAAAA
GAATCGTTTATCTCTAGGAATTCCAATTGATGTCGAATGTTCAGCCAGTA
GTCTAAAAGCAATATTCAATATTACTGACCTTGATGCACAACTTCTGCCA
TATTCAATCAAATTCCTTGGAAACGACACGTGTGAATCAATCACTGCCGC
ATCCACTAATCACATTAAAGATGGAAAAACTTGGATTGCAACTAACTATA
CAGATTGTGGAACAAAAGCGTATCACCAGGGAAACCAAATCGCTTTCGAA
CAAACAATTCTCATAGAATATGGATCTCGATCACAACAATCACTTGTCTA
CAGATATTTTAACTCTTCGTACACAGTTAAATGTGTTTTGGACCGTAGTA
TCACAACCAATCTAACAATTGATGTTATAGATCGCCAAACAGATCAACAA
GGTAGGTTGATTGATGATCAACGAGGTAGGTTGATTGATGTAAATACTGA
TAGATAAAAAACTTGCCTCTTACATATCTCACATTATAAGAAAACCATCA
AAGCTGGATAGAGCTGTTGCAAATCTTGTCACATTTACTTATTTCAAGGG
AAAATTGATAAATATTAATCATGATATGCCCAAAAATATGATGTATATTT
TCCTTTTCTTCTTTTCCTTCTTTTAGTTAATGGTGATTCAAAATTCAAAC
TTCAACTGAAGGCTATAGATGCTGGCACGAATAATGAAATTCAAGGTGTG
GCAAAAATTGGAGAAAAATTAAAATTTGAAATCAATCTACAAGATCCGAC
AAATACTGTCAAAACTTCACCTCAAAACTGTTATGCTACAAGATATAATG
GAACTGGACGGTACAACCTCATTGCAAATAGGTATACCTAAGTTTTTTTC
CTTTTTCCGCAAAAATAAATCCAAAAGATTTTAATGAGTTTTCAGGTAAG
AAAATAGGAATACTTCCTCCCCATTGGGAGTAAGCCCTAACCTAAGTCAG
AGATCACTGCACATAAGCAATTTTTCAGACACACGAAAATAAATACTAAT
AAACCCCAGGTCTTTGGCCCGAAAATTGGAGTTGCTTATATAAGAAAGGG
CTAGTCTCTTAAAGAAAATTTGAAAAGTATTTAAAAAAAACTTGTGACCG
TTTTCTTTTAAAAGATGTGCTGGACAAGACGACAATACAACTCAAATCAC
ATCGGCGAATAACGCTATCCATACCTTCTCTTGGGAATTATTGGCGTTCA
GATATTTCGGAAGTTCAGATGCAGTCATCATTGTTTGTGAAGTTTTGATT
TGCAAGAATGATCCTTTTGCAATTTTGAGTGAAGAATGTAAAAGATGCGG
ACAGATACGGACAAGATACGGACAAGATAGACGACGAAGAGATGAAGTTT
ATTCAAAAGAAAACACGATTCTTGAAAGATCGACCATTCAAACAGCTCCA
ATTTACATTATCGAAAGAGAAGGTATACCACGTTCACCAGCTATAAATAA
TAAAAGGCTTCTTCTAGGGTAGAAAAGGAACTTGCTATAACCATTCCGAT
TGGATACCTTAAGAGAACTAATTTTGGTGATAACTAACTAATAACAGCAT
CAGAATTCTTGAAAAAAATTATTTGGCAAGGAACTGTTTTTCGAAGAATT
TGTAGACTGGAAGTCGTTTATAATGCGTGTAATACTAATAATACCAATAC
TAATAATAATAATAACACGGGATTTAGTTTGTATAAACGACTGGAAGAAT
CCGGTGTTCCAGCCTTATAGATACAGGGGCTAGCTACGCAGAAACTTGCG
TAGCGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATTGACACTTTTCTTTT
GTTTGGTGTTAGTGCACAAAGGTTTCTAGACGACTAAAATTTCTCCCTTT
ATTACTTTTTGCTTTATTTCTACTATGTATGAATTAGTCGTCTAGCTTGC
TAGACTAAAGAATTTGCCAAATTCAACTAAAATAGTCTTCGCCAAAATCG
TAACAAAAGCTCATTTTAAATGCCTTGAACATTGAATATCTTTTGATCAA
ATGAGGAATTAATTGTTATATAATTATAAAATCCGCCAATGAAGTCTATT
CTCTATAAGGATCGGGGTTGAGAGGTCCGGTACGAAATACAATAAAAAAA
TCATAATTTTTTTATCCTCATCATTTTTCAGAAGCACCGGCCGTTGTAGT
GAAGAGTGACAACTTTTTGGCAGAGCCAGCAGGAATATCAATCATTGTGA
TCCTTGCATTGTTTATGTTGGTCATTTGTTCTGTTCTTCTTAAAAGAACA
TTTTGTGCCGCTGCAATTGCATCCGATAAAAAGAATGTTGAAAGCGGATT
CGATAATCCAGCCATGCAGTGAAAAAGAATAAAACAAGAATGATGTAGAA
GTAATGTTGACTGAATTTTTTTAAACTAATTTAAAGTTTAAAAAAAAAAC
AATCGAAACAATATTCAAAAAGAACTGCACTAATTTAGAATTTGTATAAT
CTCAACACAGCACAGTCATATTTTTATCTAAAATTATCTAATTGTAGCTT
CATATACCCTCGTTGTAATATTTTTGCTGAGCAGAATTAGTGTAGTGTGA
TAGGGTCGTAATGTCCCCATAGCATACAATCTTAGACAACAACCAATATT
TTAGTATTTTTTCAAAGACAAATTTATCATAAAGATTGCTTATAATTATA
AATTTACTTTTAATAATTCCATATACTTTTGAACTTTAAAAAAACATTGT
TTTAATGAAATTCACTGATCAGAAATGGGCTTTTCCAGAAAAAAATTGAA
TATGGGGGGTGGAGGATAAAACAATTTTCAGTGATTTACCCCCCGGACAA
AGTGACTTTTAGCCCCCCCGGACAGCGGGTTTTACCCTCCGGACAAGCAT
CAGTTGACCCCCGGACAACCCAAATTACCCCCGGACAGAAACAATTTACC
CTCCGGACAAGGCAAATTTTGATGATTTTTCGCTACTCCCCGGACAATAT
ATCCTCCACCCCCCATTCACGGACATTTTCTGGAAGAGCCTAATATAAGT
GCTTTGAAAGAGGTTCTACTACCTTTTTCCATTGAGAAAAGTCCTCACTC
CCTTTTTAATTTCCCCTTCCTACCCATTTATATTGAGCGATTTTGGAAAA
GCTTCTTTAAAAACAAGAGGCAGAAGGGGTACACCGTTTAACTTTGAATT
CGTGAAATATAATACCAATAAGTTAGTGAGTGTACACAATTTATAATAAG
ATACAGTCAAACTCCGGAGGGGAGGGGTACACATACCCGTACCCTTCACT
TTCCTAAGTACCACACCCTCCCCCCAGGCGGTAAAACTAATAAATACAAG
CAGATAACAAACCTTTTCACCGTCTGTATTGAGCATAGTTTAAGTTTTCC
ATCGATTCATTTGCCAACAAATTTGTCAAAAAGCTTTGTCTTCACCAAAC
ACATAATCCATGATCAAATCGTGATCTTTCTGTAATATTTTTTTTTCATA
ATTTCTATTTTTAATTTTATCCTAGAGCATCTGAAAATAAATAAATAAAT
TTATAAATGAAACAAATAAATAACTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044818XLOC_044818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072167-exon-scaffold_71-1575043694:413763..413954TCONS_00072167-exon-scaffold_71-1575043694:413763..413954Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1575043694:412154..412537TCONS_00072167-exon-scaffold_71-1575043694:412154..412537Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1575043694:411724..411928TCONS_00072167-exon-scaffold_71-1575043694:411724..411928Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1575043694:411133..411440TCONS_00072167-exon-scaffold_71-1575043694:411133..411440Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1575043694:408825..410223TCONS_00072167-exon-scaffold_71-1575043694:408825..410223Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1510915933:413763..413954TCONS_00072167-exon-scaffold_71-1510915933:413763..413954Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1510915933:412154..412537TCONS_00072167-exon-scaffold_71-1510915933:412154..412537Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1510915933:411724..411928TCONS_00072167-exon-scaffold_71-1510915933:411724..411928Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1510915933:411133..411440TCONS_00072167-exon-scaffold_71-1510915933:411133..411440Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1510915933:408825..410223TCONS_00072167-exon-scaffold_71-1510915933:408825..410223Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1491911889:413763..413954TCONS_00072167-exon-scaffold_71-1491911889:413763..413954Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1491911889:412154..412537TCONS_00072167-exon-scaffold_71-1491911889:412154..412537Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1491911889:411724..411928TCONS_00072167-exon-scaffold_71-1491911889:411724..411928Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1491911889:411133..411440TCONS_00072167-exon-scaffold_71-1491911889:411133..411440Clytia hemisphaericaexon
TCONS_00072167-exon-scaffold_71-1491911889:408825..410223TCONS_00072167-exon-scaffold_71-1491911889:408825..410223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:408825..413954 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0470407	0.106295	0.0711526	0.108098	0.337787	0.282332	0.503524	0.376733	0.118258	0.195084	0.268328	0.186942	87.4682	144.874	0.194697	0.152663	2.77638	3.42763	833.439	1006.83	0.151163	0.157761	0.181455	0.243545	0.267566	0.360564	0.363704	0.252355	0.314594	0.177291
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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