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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072164 ID=TCONS_00072164|Name=TCONS_00072164|organism=Clytia hemisphaerica|type=transcript|length=2542bpRun BLAST on NCBI protein sequence of TCONS_00072164-protein >TCONS_00072164-protein ID=TCONS_00072164-protein|Name=TCONS_00072164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp MAVRLRSSAHMVKFRSFFSQFIWSKRALCSLPPLNEPLDIGNIHSSTSNTRun BLAST on NCBI transcript from alignment at scaffold_71:374768..397309- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072164 ID=TCONS_00072164|Name=TCONS_00072164|organism=Clytia hemisphaerica|type=transcript|length=22542bp|location=Sequence derived from alignment at scaffold_71:374768..397309- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:374768..397309- >TCONS_00072164 ID=TCONS_00072164|Name=TCONS_00072164|organism=Clytia hemisphaerica|type=CDS|length=17280bp|location=Sequence derived from alignment at scaffold_71:374768..397309- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072164 vs. Swiss-Prot (Human)
Match: MPPA (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2) HSP 1 Score: 410.223 bits (1053), Expect = 1.387e-132 Identity = 228/518 (44.02%), Postives = 311/518 (60.04%), Query Frame = 1
Query: 181 PLNEPLDIGNIHSSTSNTTAGSDA--VRITTLSNGLKVASENSFGQFSTIGALIDSGSRYEIDYPSGTTHMLEKLAFQSTENFKDNDEIVQKMEALGGHVDCQAFRDCVVYAASALKHNVGGVIEVLSDAIWRSNLKDLEIEEQRETIRFELEGLDFRPDVEPELTDLIHAAAFNANTLGLPKLCPAENIDMMSQKVLKHFIQRYYRPERITIAGVNVEHDELVKQCEKYFVDHQPGWLEENIVDPDASIAQYVGGLLKDHREAPRLQPGITQLPELLHVAIGFESAKYTEQDMFAFAVLNMLLXXXXXXXXXXXXXXMYSRLYTNVLNRNHWMFASTAFNHSYADSGLFCIHSSAHPSEARKMARVITEEYAKLVTEPFNQVEVARAKKQAQSMLMMNLESRIVRFEDIGRQVLGLGKRIQPQELYESLDAVTSEDLRRISEEMLXSF*FL*KTFMSSCEV*SDP*KCTHM*IELWKSLXLRRISEEMLATKPSMAAIGNCTNLPDLTYVQDRLHKR 1728
PL+ PL + T G + ++TTL NGL+VAS+N FGQF T+G LI+SGSRYE Y SG H LEKLAF ST F DEI+ +E GG DCQ RD +YA SA + V+ +L+D + + L D E+E R ++FELE L+ RPD EP LT++IH AA+ NT+GL + CP EN+ ++++VL +++ YY P+R+ +AGV VEH+ LV KY + QP W VD D S+AQY GG+ K R+ + G T +PEL H+ +G ES + E+D FAVLNM++GGGGSFSAGGPGKGM+SRLY NVLNR+HWM+ +T+++HSY D+GL CIH+SA P + R+M +IT+E+ L+ + VE+ RAK Q SMLMMNLESR V FED+GRQVL R P EL + V ED++R++ +ML KP++AA+G+ T+LP ++Q L +
Sbjct: 43 PLSSPLP--GVPKPVFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFI-LMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRG--------------------------------------------KPAVAALGDLTDLPTYEHIQTALSSK 513 The following BLAST results are available for this feature:
BLAST of TCONS_00072164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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