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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072163 ID=TCONS_00072163|Name=TCONS_00072163|organism=Clytia hemisphaerica|type=transcript|length=1449bp
CATGAATGAATCTTATTCTATAAACGCATGTGGGATATTTTCCCTACCCC
ATTCATATCATTTGATAAATTCTTACTTTAGTTTTGTAGTACGCCTTCAT
CCAGCGTTGTTCTGCTTGATCATTAACAACAAGGAAAGGAACATATACTG
TATTTCACCTGAAATAGTGATATTTAACTTATTTTGAATGGTAGCCATTA
CTGAAACTGCAACTTTATAATATCGATTGTGATTACATTTGATTGATTGC
TATTGTGACATTTTCAAATCAACGAGTGAATAATTTTACCATATTTTGCA
GTCCATCAAATCCTCATTGTTGCCGATAGAATATCGTTTTCACTTGCacc
aatatttttattttaaccaGCATTTTGCAGCACGTCTAGTCTTCGTTACT
ATTGCATAGAATCTACTAGCGTaatttttgcaatatttatACTTAACATA
CCTGCTGAAAACCAATTAATAATTTGAAGACGAACAACTGGTGATGGTTG
TAGCATCATTCACACTAGCCGCTGGAACTCTCCTCAGTTTTGTGATGGCA
AATGCTGTCGTAGCGGCTAGAGGTTTTCTATTACCTTACGTTTGCAAGAA
AGACAATGCAcccaatgaaaatcaaaatatgaaatcacaTACTCGCCATG
AAGAATACCTGATTTCAACGTCTTATCCACATCCACATTGATGGCTGACA
AAACATTTTAGCGATCTTATGCCATCCCAGTCAGGTATTTTTCACCATTT
CATCGTGGAAAGACATTTATTTTATAGGTGTTTTATAATCATTTAGACTT
GAATATCCATAGATTTAtaggctagatgtcgtgcttttgctgaaaggTGT
GccggttaggtaggaaatcctacctaggtcacttGACAtcacaatagaat
ttcagtgcttgaccaatcagaagcgttGCTGtcattcacttttttttgcc
tgtgatggcttaaagcacgacatctagcccttcggtattataaatctatg
gtttttAACCTAAAGTTTATTACCGTTTGGGATTTGTATGAGCATTTACC
TTTTACCTTTCTGGGATCGAAGTTAATTACtatagtttttttcacttttt
gtagCTTATCTTTTCTGTAAATAGTCTCTTTTGGTTGTTACAGTATATTA
TATAAAACAACGCGtcagtaaaaataaaattttagttaaaatttagttaa
aatggTTCCGATCAGTCATCTTACTTTTCGCATCATTCTGGATAAGTTCT
TTCTGTTTAGAATCTCTGCATCTCTCCGTATATAAAACTCATAAGAAgtg
attgaaaaattgaaaaaacaatgAATTAACCTCTAAAttatttagaatat
ttttatcTTGAGTCAGAacgaccttttttgaaatttattttgctatGAGT
TTCAATTCTCGGTCGAACTGTACATAGCATTAACTAGAGATTTTCTCTG Run BLAST on NCBI transcript from alignment at scaffold_71:374768..377559- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072163 ID=TCONS_00072163|Name=TCONS_00072163|organism=Clytia hemisphaerica|type=transcript|length=2792bp|location=Sequence derived from alignment at scaffold_71:374768..377559- (Clytia hemisphaerica)
CATGAATGAATCTTATTCTATAAACGCATGTGGGATATTTTCCCTACCCC
ATTCATATCATTTGATAAATTCTTACTTTAGTTTTGTAGTACGCCTTCAT
CCAGCGTTGTTCTGCTTGATCATTAACAACAAGGAAAGGAACATATACTG
TATTTCACCTGAAATAGTGATATTTAACTTATTTTGAATGGTAGCCATTA
CTGAAACTGCAACTTTATAATATCGATTGTGATTACATTTGATTGATTGC
TATTGTGACATTTTCAAATCAACGAGTGAATAATTTTACCATATTTTGCA
GTCCATCAAATCCTCATTGTTGCCGATAGAATATCGTTTTCACTTGCACC
AATATTTTTATTTTAACCAGCATTTTGCAGCACGTCTAGTCTTCGTTACT
ATTGCATAGAATCTACTAGCGTAATTTTTGCAATATTTATACTTAACATA
CCTGCTGAAAACCAATTAATAATTTGAAGACGAACAACTGGTGATGGTTG
TAGCATCATTCACACTAGCCGCTGGAACTCTCCTCAGTTTTGTGATGGCA
AATGCTGTCGTAGCGGCTAGAGGTTTTCTATTACCTTACGTTTGCAAGAA
AGACAATGCACCCAATGAAAATCAAAATATGAAATCACATACTCGCCATG
AAGAATACCTGATTTCAACGTCTTAGTAAGTTTTCTTTGATTGAATTCTA
AACTGTATACGGTGTTTTTTCTCTTAATACATGTTTTTTTTATAAGCATA
ACGTTTATACGCATACCGAGACCTGAATTTGTCTAAAAAATTACAAGCAT
CTTACTGAGCTTGCTTTTGAGGTGTGTAAGTGAAAAAAAAATTTTCTAAT
AGATCGAAAAGAAGTCGTTGTAATTAAAATCTTTAATAGAGTACACAGCC
TGCATTAAATTAACAAAAAGTTTCTTCAAACGGCATTTAATTTAAAAAAA
TACAATCGTAAACGCGGCAATCGTTCACAACTTTCCTAAAAAAACTTTGT
GTCGTTACTTATTTCCCTATCCTCATGTATAGCAACGACAGATTTTGGAA
AGATTGGAGACTCGAATCTTTCGGAAAAATAAGCATATGATAAACATACT
TCAAGCCTGAGTCTAAAATATCTCTAAGTATAAATGAGCTTGTTTCCCAA
AAAACATATGCTTATAAAAGAAAAGACATGTAGTCGTTTCAAAAAGTTGA
CAATTCTGAAACCATTGAGATACAGCCAAAGGCTAGAGAGGAATTTTCAA
CTCGTTTTCAAGGTAAGAAGAAGAGAGATCTCAAGATTTGCGCCGCATAT
TTCGGATGGTGATTGAATCTAATATTGTCTTTGTTTTCGTATTTCACATC
TTTTGGAATTTTGTTAATAGACTTACCTCCAATTCAGTGTTTTTATGGAA
ATCACGCCATTCGCACAACGTATGTTGCAAAAAAGTGGCTATAAATCCTA
CATAAGGTTTCGCCACTGGCCATCGGCTCCTATATCTCAATGGTTGAACC
AATGGAAAATTAACCAGTAACCAAAAATTTTAAAGTAATCGTCTAGAGAT
CAAGCTGATTATAGCTGGGCGAAGTTAGTGAACTCGTCGTTTAAATAACA
AAATTCATGCCTTTAATTGTGGCTTCTTTCAACTGCTAAAGAGGACCTAC
TCTACAGGTACCTAACAGCCGGGGGGTTTGGAAAAAATCTCAAAACTTAA
TAAGTGGGGGGGGGTTGGAATAAAATGGTGGAAAATTTTCAAAAAGAAGG
CCAATACAGCAGAATTAGGGCAAAAGAGGGAACTTTCCAAAAAATCAATT
AAAAAAATCAGTTATTAGGTACCCGAGAGTATATAGTAGTTGCCTAGCAT
GCTGGACGACTTGTTCAGACATAATAAAACATAAAGCAAAAAAATTGGAA
ACTGATAGTATCATATTATCATATACTTAACACCCGTATTATTGTATTAC
ACGGATGATATGGCTGCCACTCGTTAATAATGTCTATTTGTATTTACTTT
TTCTATTTCTTTTTCTAGTCCACATCCACATTGATGGCTGACAAAACATT
TTAGCGATCTTATGCCATCCCAGTCAGGTATTTTTCACCATTTCATCGTG
GAAAGACATTTATTTTATAGGTGTTTTATAATCATTTAGACTTGAATATC
CATAGATTTATAGGCTAGATGTCGTGCTTTTGCTGAAAGGTGTGCCGGTT
AGGTAGGAAATCCTACCTAGGTCACTTGACATCACAATAGAATTTCAGTG
CTTGACCAATCAGAAGCGTTGCTGTCATTCACTTTTTTTTGCCTGTGATG
GCTTAAAGCACGACATCTAGCCCTTCGGTATTATAAATCTATGGTTTTTA
ACCTAAAGTTTATTACCGTTTGGGATTTGTATGAGCATTTACCTTTTACC
TTTCTGGGATCGAAGTTAATTACTATAGTTTTTTTCACTTTTTGTAGCTT
ATCTTTTCTGTAAATAGTCTCTTTTGGTTGTTACAGTATATTATATAAAA
CAACGCGTCAGTAAAAATAAAATTTTAGTTAAAATTTAGTTAAAATGGTT
CCGATCAGTCATCTTACTTTTCGCATCATTCTGGATAAGTTCTTTCTGTT
TAGAATCTCTGCATCTCTCCGTATATAAAACTCATAAGAAGTGATTGAAA
AATTGAAAAAACAATGAATTAACCTCTAAATTATTTAGAATATTTTTATC
TTGAGTCAGAACGACCTTTTTTGAAATTTATTTTGCTATGAGTTTCAATT
CTCGGTCGAACTGTACATAGCATTAACTAGAGATTTTCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072163-exon-scaffold_71-1575043694:376885..377559 | TCONS_00072163-exon-scaffold_71-1575043694:376885..377559 | Clytia hemisphaerica | exon |
| TCONS_00072163-exon-scaffold_71-1575043694:374768..375541 | TCONS_00072163-exon-scaffold_71-1575043694:374768..375541 | Clytia hemisphaerica | exon |
| TCONS_00072163-exon-scaffold_71-1510915933:376885..377559 | TCONS_00072163-exon-scaffold_71-1510915933:376885..377559 | Clytia hemisphaerica | exon |
| TCONS_00072163-exon-scaffold_71-1510915933:374768..375541 | TCONS_00072163-exon-scaffold_71-1510915933:374768..375541 | Clytia hemisphaerica | exon |
| TCONS_00072163-exon-scaffold_71-1491911889:376885..377559 | TCONS_00072163-exon-scaffold_71-1491911889:376885..377559 | Clytia hemisphaerica | exon |
| TCONS_00072163-exon-scaffold_71-1491911889:374768..375541 | TCONS_00072163-exon-scaffold_71-1491911889:374768..375541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:374768..377559 - |
Blast
The following BLAST results are available for this feature:
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