TCONS_00072160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072160
Unique NameTCONS_00072160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072160 ID=TCONS_00072160|Name=TCONS_00072160|organism=Clytia hemisphaerica|type=transcript|length=1094bp
ATAATAACAATCATGGCAGCAATCGAGTCAAATGTGGGCGGTTTTGGGCG
CATAAGTTGAGAGACTGCAAAGGGCGGCACAAAACGGTGCGTTGAAGAAT
GAGAAGATAGAAAAAAGCCGTTTTAACAAAAATTCCCCTTAAAGGTGAGA
AATTTTTAAATagcatttaaaagtttttattacATTGATGAGACTAATGA
TCATaagcgaaaaaaaataaaatcatattACCGTGGCATATCTGAACAAT
CTAGTTCTTGTTTAGCCGCCGCGGCTTAAAATGGCTGCCACGTGTTTTGG
GGAAGTTTGGTAATAAATGTAAGCGGTCGCGTGTTTTTATGGTTTAAATA
TAATCGGCCGCGTGTTTTATGGTCTAAATATAAGCAACCGCCTGTATTAA
AGACCTAAATGTAGGCGGCCACTGGATCTATACTTTGTCGACCTCGACCC
TAAACCTcgaaaaaagccgaccctcaACCCTTGGAAAAAGCCGACCCttg
accaaaatacaataaaaagccgaccctggATAAAAAACTACTATACCagc
ttttatattttacaaGAATTCTTTTGGATGAATATTCCATAAATTGATCA
TTCGAACATTTTCATTCAGCAGTCAATCTGTGATAAAAATGTCAGTCGTC
GGTCGGGGGGAGGGGCAGTGAAAGGTCGAGGTCGAGAAAGTATAGATTGC
CGGCAGCCGCATGTATTGACGATCTGAATGTAGTCGGCCGCGTGTTTTAT
GGTCTAAATATAGGCGGCCGCTTGATTTGCCAATCTGAAGATAAGCGGCC
GCACGtattatatatattattttaccaTATAAACTATAACTAGTAAATGG
GACCTAAGTCAAACTTTAATCATAAAAGATTGTTAGGTAGAAATcacttt
tcatattcaaatttataaatCTGTCGATAGTCAAATTGTTATCTGACAAC
ACCTGCTCTAGGAGAGAGGGAGTTGTTCTTCCGATTCTATGATATTTATC
GGAATTAAACATTATTTGTTTAATACCACGATCTACAGACATTCGAACGA
CATGTCCTGCCTAATTCTTTTGCTGTTTTCGAATGAAACTACTG
Run BLAST on NCBI

transcript from alignment at scaffold_71:356654..358073-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072160 ID=TCONS_00072160|Name=TCONS_00072160|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_71:356654..358073- (Clytia hemisphaerica)
ATAATAACAATCATGGCAGCAATCGAGTCAAATGTGGGCGGTTTTGGGCG
CATAAGTTGAGAGACTGCAAAGGGCGGCACAAAACGGTGCGTTGAAGAAT
GAGAAGATAGAAAAAAGCCGTTTTAACAAAAATTCCCCTTAAAGGTGAGA
AATTTTTAAATAGCATTTAAAAGTTTTTATTACATTGATGAGACTAATGA
TCATAAGCGAAAAAAAATAAAATCATATTACCGTGGCATATCTGAACAAT
CTAGTTCTTGTTTAGCCGCCGCGGCTTAAAATGGCTGCCACGTGTTTTGG
GGAAGTTTGGTAATAAATGTAAGCGGTCGCGTGTTTTTATGGTTTAAATA
TAAGCAACCACATGTATTAAAGACCTAAATGTAGGCGGCCACTGGATCTA
TACTTTGTCGACCTCGACCCTAAACCTCGAAAAAAGCCGACCCTTGACCA
AAATACAATAAAAAGCCGACCCTGGGTAAAAAACTACTATATCAGCTTTT
ATATTTTACAAGAATTCTTTTGGATGAATATTCCATAAATTGATCATTCG
AACATTTTCATTTAGCAGTCAATCTGTGATAAAAATGCCAGTCGTCGGTC
GGGGGGAGGGGCAGTGAAAGGTCGAGGTCGAGAAAGTATAGATTGCCGGC
AGCCGCATGTATTGACGATCTGAATGTAGTCGGCCGCGTGTTTTATGGTC
TAAATATAAGCAACCGCCTGTATTAAAGACCTAAATGTAGGCGGCCACTG
GATCTATACTTTGTCGACCTCGACCCTAAACCTCGAAAAAAGCCGACCCT
CAACCCTTGGAAAAAGCCGACCCTTGACCAAAATACAATAAAAAGCCGAC
CCTGGATAAAAAACTACTATACCAGCTTTTATATTTTACAAGAATTCTTT
TGGATGAATATTCCATAAATTGATCATTCGAACATTTTCATTCAGCAGTC
AATCTGTGATAAAAATGTCAGTCGTCGGTCGGGGGGAGGGGCAGTGAAAG
GTCGAGGTCGAGAAAGTATAGATTGCCGGCAGCCGCATGTATTGACGATC
TGAATGTAGTCGGCCGCGTGTTTTATGGTCTAAATATAGGCGGCCGCTTG
ATTTGCCAATCTGAAGATAAGCGGCCGCACGTATTATATATATTATTTTA
CCATATAAACTATAACTAGTAAATGGGACCTAAGTCAAACTTTAATCATA
AAAGATTGTTAGGTAGAAATCACTTTTCATATTCAAATTTATAAATCTGT
CGATAGTCAAATTGTTATCTGACAACACCTGCTCTAGGAGAGAGGGAGTT
GTTCTTCCGATTCTATGATATTTATCGGAATTAAACATTATTTGTTTAAT
ACCACGATCTACAGACATTCGAACGACATGTCCTGCCTAATTCTTTTGCT
GTTTTCGAATGAAACTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044815XLOC_044815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072160-exon-scaffold_71-1575043694:357721..358073TCONS_00072160-exon-scaffold_71-1575043694:357721..358073Clytia hemisphaericaexon
TCONS_00072160-exon-scaffold_71-1575043694:356654..357394TCONS_00072160-exon-scaffold_71-1575043694:356654..357394Clytia hemisphaericaexon
TCONS_00072160-exon-scaffold_71-1510915933:357721..358073TCONS_00072160-exon-scaffold_71-1510915933:357721..358073Clytia hemisphaericaexon
TCONS_00072160-exon-scaffold_71-1510915933:356654..357394TCONS_00072160-exon-scaffold_71-1510915933:356654..357394Clytia hemisphaericaexon
TCONS_00072160-exon-scaffold_71-1491911889:357721..358073TCONS_00072160-exon-scaffold_71-1491911889:357721..358073Clytia hemisphaericaexon
TCONS_00072160-exon-scaffold_71-1491911889:356654..357394TCONS_00072160-exon-scaffold_71-1491911889:356654..357394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:356654..358073 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0760151	0.508729	0.451963	0.561081	0.652223	0.90921	0.567706	0	0.568922	0.329795	1.15153	0.49628	0.7553	2.55057	0.976995	0.445453	0.508353	1.62564	2.42764	1.04337	0.328162	0	0	1.66571	1.26954	0.402231	1.16174
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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