TCONS_00072157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072157
Unique NameTCONS_00072157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072157 ID=TCONS_00072157|Name=TCONS_00072157|organism=Clytia hemisphaerica|type=transcript|length=393bp
AAAAGAATCAGTTTGAATTTTAGTTAGTTGGTTATCAGTCGCGTTTGTTC
AGTTCTTAAAAGAATATATTCTTAAGAAATGGATACCATGACATTAGCCA
ATATTGAGTTGCAAAAGTCGAAGCAAAATATTGCTCGCCTCTCAAaggaa
atagaaaatttgaaaatcaagcaTAAAATCGCCAGCAATGATTGCTTGGC
TAAAGAATCAAAGATTcgcaaatataaaaaagaaaacgtggATTTACATG
TGAAACTTGCAAAGGAGAAAGCGGTCAACGCATCGTTGAGAAAAATTCCA
AAGCAGATAGTCAAGTCACCTCAACCggTCGTCAAATCATCAGGCACAAC
TGATGTTGTATTTAAATCACGAGACTTGCGCTTAAACGATCCG
Run BLAST on NCBI

protein sequence of TCONS_00072157-protein

>TCONS_00072157-protein ID=TCONS_00072157-protein|Name=TCONS_00072157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MDTMTLANIELQKSKQNIARLSKEIENLKIKHKIASNDCLAKESKIRKYK
KENVDLHVKLAKEKAVNASLRKIPKQIVKSPQPVVKSSGTTDVVFKSRDL
RLNDP
Run BLAST on NCBI

transcript from alignment at scaffold_71:350725..351948-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072157 ID=TCONS_00072157|Name=TCONS_00072157|organism=Clytia hemisphaerica|type=transcript|length=1224bp|location=Sequence derived from alignment at scaffold_71:350725..351948- (Clytia hemisphaerica)
AAAAGAATCAGTTTGAATTTTAGTTAGTTGGTTATCAGTCGCGTTTGTTC
AGTTCTTAAAAGAATATATTCTTAAGAAATGGATACCATGACATTAGCCA
ATATTGAGTTGCAAAAGTCGAAGCAAAATATTGCTCGCCTCTCAAAGGAA
ATAGAAAATTTGAAAATCAAGCATAAAATCGCCAGCAATGATTGCTTGGC
TAAAGAATCAAAGATTCGCAAATATAAAAAAGAAAACGTGGATTTACATG
TGAAACTTGCAAAGGAGAAGTAAGTACTTTATTTTTTCTTTTAGCCAAAA
TAATAACAAGATTTGTAAATCAACGAATTAGAACGAATCTAAAATTCTCA
ATGTAACAGACCAGTCTTTACAGTTTGAGCCCAATTTTGTAGTTTCATTG
GTCGGGTAGCTCAGTCGGTAGAGCATTTGCCTTACAACCCAAGTATTAAG
GGTTCGTTCCCCAGTCACCGCAAACTCAGCGAATGAGTAGCTTAGATCGA
GTAATCTGAAATAAGGTGGTAAGTTACATACTGGAAGCTGAGAGTATGTG
TGACGCTCCACCTCAGTATTTGATCTCCCAGGTCTAGCCTAAATAGAAAA
GGGGGTAAAATTCCTCACTCCTGGCTCCACAGATAGCCAACAGATTAATA
TACTTTCTTTAATTTTACTTGTGGTTGGTTTATTGTTTTTATTATATTTT
GGCATTTTTTAATCCATCGATTCTTCATTGCATATTGTAAATGAAAAGTA
TCTGATATTTCGAAACATATGCTTGATGTTATGTCATCTTTTCATTTTAG
AGCGGTCAACGCATCGTTGAGAAAAATTCCAAAGCAGATAGTCAAGTCAC
CTCAACCGTAAGAATTCCTAAAATACCTATAGTACAATTTGAAAGTGGAT
GCGTACGCACTCTTGATGGTACCAAGTGAATACCTTATCGGGGAAAACTT
CGTCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGACTAAAAT
TTCGTCACTTTTCCCCAACGAAGTTTTCCCCGATAACCGTTTTTTGTGAC
TTATTTCTAACGGCTTTATAACTTCTCGGAGAAAATTCAATCGGAATTAC
ATGACGGATGATTTGGACATGTTTTCTCTATTTAGCTTATCAATTTTATT
TTTACAGGGTCGTCAAATCATCAGGCACAACTGATGTTGTATTTAAATCA
CGAGACTTGCGCTTAAACGATCCG

Coding sequence (CDS) from alignment at scaffold_71:350725..351948-

>TCONS_00072157 ID=TCONS_00072157|Name=TCONS_00072157|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_71:350725..351948- (Clytia hemisphaerica)
GGTCGTCAAATCATCAGGCACAACTGATGTTGTATTTAAATCACGAGACT
TGCGCTTAAACGATCCGAGCGGTCAACGCATCGTTGAGAAAAATTCCAAA
GCAGATAGTCAAGTCACCTCAACCATGGATACCATGACATTAGCCAATAT
TGAGTTGCAAAAGTCGAAGCAAAATATTGCTCGCCTCTCAAAGGAAATAG
AAAATTTGAAAATCAAGCATAAAATCGCCAGCAATGATTGCTTGGCTAAA
GAATCAAAGATTCGCAAATATAAAAAAGAAAACGTGGATTTACATGTGAA
ACTTGCAAAGGAGAAGGTCGTCAAATCATCAGGCACAACTGATGTTGTAT
TTAAATCACGAGACTTGCGCTTAAACGATCCGAGCGGTCAACGCATCGTT
GAGAAAAATTCCAAAGCAGATAGTCAAGTCACCTCAACCATGGATACCAT
GACATTAGCCAATATTGAGTTGCAAAAGTCGAAGCAAAATATTGCTCGCC
TCTCAAAGGAAATAGAAAATTTGAAAATCAAGCATAAAATCGCCAGCAAT
GATTGCTTGGCTAAAGAATCAAAGATTCGCAAATATAAAAAAGAAAACGT
GGATTTACATGTGAAACTTGCAAAGGAGAAGGTCGTCAAATCATCAGGCA
CAACTGATGTTGTATTTAAATCACGAGACTTGCGCTTAAACGATCCGAGC
GGTCAACGCATCGTTGAGAAAAATTCCAAAGCAGATAGTCAAGTCACCTC
AACCATGGATACCATGACATTAGCCAATATTGAGTTGCAAAAGTCGAAGC
AAAATATTGCTCGCCTCTCAAAGGAAATAGAAAATTTGAAAATCAAGCAT
AAAATCGCCAGCAATGATTGCTTGGCTAAAGAATCAAAGATTCGCAAATA
TAAAAAAGAAAACGTGGATTTACATGTGAAACTTGCAAAGGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044814XLOC_044814Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072157-proteinTCONS_00072157-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072157-exon-scaffold_71-1575043694:351680..351948TCONS_00072157-exon-scaffold_71-1575043694:351680..351948Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1575043694:351092..351148TCONS_00072157-exon-scaffold_71-1575043694:351092..351148Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1575043694:350725..350791TCONS_00072157-exon-scaffold_71-1575043694:350725..350791Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1510915933:351680..351948TCONS_00072157-exon-scaffold_71-1510915933:351680..351948Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1510915933:351092..351148TCONS_00072157-exon-scaffold_71-1510915933:351092..351148Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1510915933:350725..350791TCONS_00072157-exon-scaffold_71-1510915933:350725..350791Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1491911889:351680..351948TCONS_00072157-exon-scaffold_71-1491911889:351680..351948Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1491911889:351092..351148TCONS_00072157-exon-scaffold_71-1491911889:351092..351148Clytia hemisphaericaexon
TCONS_00072157-exon-scaffold_71-1491911889:350725..350791TCONS_00072157-exon-scaffold_71-1491911889:350725..350791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:350725..351948 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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