TCONS_00072156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072156
Unique NameTCONS_00072156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072156 ID=TCONS_00072156|Name=TCONS_00072156|organism=Clytia hemisphaerica|type=transcript|length=250bp
AAATAACTGTGATTAGAGAAGTTTGTGAGCCAACtattaaacaaaaacaa
aaggcaAAATCGAACGTTCAACAAAGCAGAAAACCTGAATCCAAAATTTC
gaAACCCGTACAAATGAACGGGTATCTTTTCGTACCGGCCGAATACGTTA
AATATATGCCTGGCTTTGGATCGCTCGAAATTCCAAAGGTTAAAGGCTCA
CAAGACTTTCGTATCAACAGCTCCAAATCACAGGAAAGACTGAATCGACT
Run BLAST on NCBI

transcript from alignment at scaffold_71:348804..350163-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072156 ID=TCONS_00072156|Name=TCONS_00072156|organism=Clytia hemisphaerica|type=transcript|length=1360bp|location=Sequence derived from alignment at scaffold_71:348804..350163- (Clytia hemisphaerica)
AAATAACTGTGATTAGAGAAGTTTGTGAGCCAACTATTAAACAAAAACAA
AAGGCAAAATCGAACGTTCAACAAAGCAGAAAACCTGAATCCAAAATTTC
GTAAGTTGAATCTCAGATTTGCACGAAGAAAATTCTTTCGTACGTGTCTA
TTTAAAAGTCATATTTAACCTACCTACCTCTAAAGAGAGGTTTGGCACCC
CTAAAAGGGCGGTATTTTCCTTTGGCGTGGCGTGACGAATAAGCTTTTTT
GAAAGTGACGAAATATCAGATAAGAGAACATGGATGTATATTGAAATACA
CTTCACGTCTTTTTATAGGAACATCCAAAAATGTTCTTAAAATGTTCTTA
TTTTCCCAATTTTTTTCCTTTTTAATTTTCATAAGAAATCAGGTGTTTTT
GAGGCACCAAAGCCTTGAAATGTTCTTAACTTGTTCTTAACATTTTGGCC
AGCGAAGCCTTATGTTCTTAATAGTTTCTTTTTATTAAAAAAACATGTAT
TTTGTTACCACCTACTTTGACGATGTTTTATTTCAATTTTAGGAAACCCG
TACAAATGAACGGGTATCTTTTCGTACCGGCCGAATACGTTAAATATATG
CCGTAAGTTAAATATTAATTTTCTTTTCTACCGAAACTGCCAAATAGTTA
ACTACAGTAGAGTTTCTTTAACTTTTAACCTCTATAATTCGAATGTCTCC
TTAATTTGAACAAGTATTTTCGTTCCTTCAGTTAACGATGTCTTATTAAC
CTCACACCATAACTCGAATTTCCCTTAACTCGAACAAATTTGTGTTCCCC
GTGCGTGTTCGAGTTATGGAGACTCCACTGTACTAGCGTTATTGTATAGC
GCGTTCAATTCAATCAAACTTTTGAAAAATGACTTTAATAATAATGGTGA
TATTATTTGTTAACTTCAGAACCTCTGAAAAGTCGTAAATTTGGATGATT
TATGGTGGTGACGATTATTTATTGAGCGTATTTGTCTATTTATTTGGCGG
ATTTTCACCAAGAAACCTTATCTCAAACGAATGTTTGCTTAAAATGAATT
TTTTTTCTTATTTTTCTCTCGTAGTGGCTTTGGATCGCTCGAAATTCCAA
AGGTTAAAGGCTCACAAGACTTTCGTATCAACAGGTAAATGTTCATAAAG
TTTAACAGAAGTGGGACTAAAAAATAGGTTCAGATAGAACAAGACCATAG
TGGAAATACTTCTTAAAATTAAAATCAACAGGGATCAGAGTGTAACAGTC
TTGGAATTATTTGAGATTGATCCCATTGATTGAAACTATATATTGGCTAA
AATTCGTTCTATTTGGATCATTTATTTCAGCTCCAAATCACAGGAAAGAC
TGAATCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044813XLOC_044813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072156-exon-scaffold_71-1575043694:350064..350163TCONS_00072156-exon-scaffold_71-1575043694:350064..350163Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1575043694:349562..349621TCONS_00072156-exon-scaffold_71-1575043694:349562..349621Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1575043694:349030..349089TCONS_00072156-exon-scaffold_71-1575043694:349030..349089Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1575043694:348804..348833TCONS_00072156-exon-scaffold_71-1575043694:348804..348833Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1510915933:350064..350163TCONS_00072156-exon-scaffold_71-1510915933:350064..350163Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1510915933:349562..349621TCONS_00072156-exon-scaffold_71-1510915933:349562..349621Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1510915933:349030..349089TCONS_00072156-exon-scaffold_71-1510915933:349030..349089Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1510915933:348804..348833TCONS_00072156-exon-scaffold_71-1510915933:348804..348833Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1491911889:350064..350163TCONS_00072156-exon-scaffold_71-1491911889:350064..350163Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1491911889:349562..349621TCONS_00072156-exon-scaffold_71-1491911889:349562..349621Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1491911889:349030..349089TCONS_00072156-exon-scaffold_71-1491911889:349030..349089Clytia hemisphaericaexon
TCONS_00072156-exon-scaffold_71-1491911889:348804..348833TCONS_00072156-exon-scaffold_71-1491911889:348804..348833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:348804..350163 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top