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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072155 ID=TCONS_00072155|Name=TCONS_00072155|organism=Clytia hemisphaerica|type=transcript|length=984bp
ACTGtttgttaatttcattgttttctttgTCAATTTTATATAACCTATTA
TTAATGTTTGTCATTAGTTTGTGTATAAAAGGGAAGAACTTTTTCAACTA
TATTCATCACTCACAAATAAATTAACTCAATTTTTCTGCTGGTTCAGAAG
AAgaacaaaaaacgaaaatgaagaTCATCATCGCTGCTTGTTTAATCGCT
GCTATCAGTGGCTTGAAAGTTCCCGACATCACTGGCACAACACCACCAGC
AATCGATTGTCCAAATAAATTATGTCATGGAAAAGCTGATGGAAACTACA
ACATCTATGGACAGGCAAGTTACTTCGTCCAATGTCTCGGAGGAAATGCT
TATTGTCAAGCTTGTtggccattaagtttacaattcaGTGAAACGTGTAA
CCAATGTCTTTATAACAAAAAAGATGATTGCGTTACCACAGAGGCATGGC
AACCAGCCACCACTTTCAATTGTCCAGACAAATGCCCCCATTATGGACCA
GAATTCAGTGGAAATGTGGCTGATCCAGCTGAAAAACGACAATACGTTGC
NGGAATTCAGTGGAAATGTGGCTGACCCAGCTGAAAAACGACAATACGTT
GCTTGTTGGCAAGGAGTTACTGTTGGATGTGTTGCTTGTCCAGGAAAATT
GGAATTCAACCAAGACTGGAACGCTTGTCTTTATCAAGGAAAATACAAAA
CTGCTCCAGACTCAAGCCATTAATCACTGAGATTTAACAACTCATCAATC
AATTTACTCATCTAACAACAGTCTTACTTGAGGCAGCTTTTTAACCTTTA
TACCATTTACATAAACCTTTTATATCAATATTTATATCTAATCTTTCAAT
GTATATGTTGTACACCtttccaaaatcttttaatCCTTTTAGTCCAAAGT
AACTAGATTATTGCTatttttattcaacattttttaatcTAAACTTTAAT
AAGACCGAAATATATCTTATTGCAACTTCAAGAA Run BLAST on NCBI protein sequence of TCONS_00072155-protein >TCONS_00072155-protein ID=TCONS_00072155-protein|Name=TCONS_00072155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MKIIIAACLIAAISGLKVPDITGTTPPAIDCPNKLCHGKADGNYNIYGQA
SYFVQCLGGNAYCQACWPLSLQFSETCNQCLYNKKDDCVTTEAWQPATTF
NCPDKCPHYGPEFSGNVADPAEKRQYVXGIQWKCG Run BLAST on NCBI transcript from alignment at scaffold_71:334205..335510- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072155 ID=TCONS_00072155|Name=TCONS_00072155|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at scaffold_71:334205..335510- (Clytia hemisphaerica)
ACTGTTTGTTAATTTCATTGTTTTCTTTGTCAATTTTATATAACCTATTA
TTAATGTTTGTCATTAGTTTGTGTATAAAAGGGAAGAACTTTTTCAACTA
TATTCATCACTCACAAATAAATTAACTCAATTTTTCTGCTGGTTCAGAAG
AAGAACAAAAAACGAAAATGAAGATCATCATCGCTGCTTGTTTAATCGCT
GGTAAGTGTCTCATCGGAAATCTTCTTTTCTGCACTATTTTACTTTGATT
TTACTCTTGTAATCAGCAATAAATAGTAAAAAAGTTTAATCCCAATCGGG
AAACTTCATTTAAATCTCATCCACATCACATTAAAGATTCTCCAGCATAT
TGTGATTTTACTATTTCCTTTTATTTACAACTAACACAAAAAGTACCCCA
AGGGCAGCGAGACAGGGGTGTGACAGTGTTTACCAATCAAGCCATCGAAC
GTTATCTGAGGCTAATTCGACTTCACTTCTTTTGTCGATCAAAAGAATTC
ATCACATTCTTCCTTCATTCTAGCTATCAGTGGCTTGAAAGTTCCCGACA
TCACTGGCACAACACCACCAGCAATCGATTGTCCAAATAAATTATGTCAT
GGAAAAGCTGATGGAAACTACAACATCTATGGACAGGCAAGTTACTTCGT
CCAATGTCTCGGAGGAAATGCTTATTGTCAAGCTTGTTGGCCATTAAGTT
TACAATTCAGTGAAACGTGTAACCAATGTCTTTATAACAAAAAAGATGAT
TGCGTTACCACAGAGGCATGGCAACCAGCCACCACTTTCAATTGTCCAGA
CAAATGCCCCCATTATGGACCAGAATTCAGTGGAAATGTGGCTGATCCAG
CTGAAAAACGACAATACGTTGCNGGAATTCAGTGGAAATGTGGCTGACCC
AGCTGAAAAACGACAATACGTTGCTTGTTGGCAAGGAGTTACTGTTGGAT
GTGTTGCTTGTCCAGGAAAATTGGAATTCAACCAAGACTGGAACGCTTGT
CTTTATCAAGGAAAATACAAAACTGCTCCAGACTCAAGCCATTAATCACT
GAGATTTAACAACTCATCAATCAATTTACTCATCTAACAACAGTCTTACT
TGAGGCAGCTTTTTAACCTTTATACCATTTACATAAACCTTTTATATCAA
TATTTATATCTAATCTTTCAATGTATATGTTGTACACCTTTCCAAAATCT
TTTAATCCTTTTAGTCCAAAGTAACTAGATTATTGCTATTTTTATTCAAC
ATTTTTTAATCTAAACTTTAATAAGACCGAAATATATCTTATTGCAACTT
CAAGAA Coding sequence (CDS) from alignment at scaffold_71:334205..335510- >TCONS_00072155 ID=TCONS_00072155|Name=TCONS_00072155|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_71:334205..335510- (Clytia hemisphaerica)
CTATCAGTGGCTTGAAAGTTCCCGACATCACTGGCACAACACCACCAGCA
ATCGATTGTCCAAATAAATTATGTCATGGAAAAGCTGATGGAAACTACAA
CATCTATGGACAGGCAAGTTACTTCGTCCAATGTCTCGGAGGAAATGCTT
ATTGTCAAGCTTGTTGGCCATTAAGTTTACAATTCAGTGAAACGTGTAAC
CAATGTCTTTATAACAAAAAAGATGATTGCGTTACCACAGAGGCATGGCA
ACCAGCCACCACTTTCAATTGTCCAGACAAATGCCCCCATTATGGACCAG
AATTCAGTGGAAATGTGGCTGATCCAGCTGAAAAACGACAATACGTTGCN
GGAATTCAGTGGAAATGTGGCTGAATGAAGATCATCATCGCTGCTTGTTT
AATCGCTGCTATCAGTGGCTTGAAAGTTCCCGACATCACTGGCACAACAC
CACCAGCAATCGATTGTCCAAATAAATTATGTCATGGAAAAGCTGATGGA
AACTACAACATCTATGGACAGGCAAGTTACTTCGTCCAATGTCTCGGAGG
AAATGCTTATTGTCAAGCTTGTTGGCCATTAAGTTTACAATTCAGTGAAA
CGTGTAACCAATGTCTTTATAACAAAAAAGATGATTGCGTTACCACAGAG
GCATGGCAACCAGCCACCACTTTCAATTGTCCAGACAAATGCCCCCATTA
TGGACCAGAATTCAGTGGAAATGTGGCTGATCCAGCTGAAAAACGACAAT
ACGTTGCNGGAATTCAGTGGAAATGTGGCTGAATGAAGATCATCATCGCT
GCTTGTTTAATCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072155-exon-scaffold_71-1575043694:335310..335510 | TCONS_00072155-exon-scaffold_71-1575043694:335310..335510 | Clytia hemisphaerica | exon |
| TCONS_00072155-exon-scaffold_71-1575043694:334205..334987 | TCONS_00072155-exon-scaffold_71-1575043694:334205..334987 | Clytia hemisphaerica | exon |
| TCONS_00072155-exon-scaffold_71-1510915933:335310..335510 | TCONS_00072155-exon-scaffold_71-1510915933:335310..335510 | Clytia hemisphaerica | exon |
| TCONS_00072155-exon-scaffold_71-1510915933:334205..334987 | TCONS_00072155-exon-scaffold_71-1510915933:334205..334987 | Clytia hemisphaerica | exon |
| TCONS_00072155-exon-scaffold_71-1491911889:335310..335510 | TCONS_00072155-exon-scaffold_71-1491911889:335310..335510 | Clytia hemisphaerica | exon |
| TCONS_00072155-exon-scaffold_71-1491911889:334205..334987 | TCONS_00072155-exon-scaffold_71-1491911889:334205..334987 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:334205..335510 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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