TCONS_00072154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072154
Unique NameTCONS_00072154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072154 ID=TCONS_00072154|Name=TCONS_00072154|organism=Clytia hemisphaerica|type=transcript|length=2813bp
TTTTTAAACCCAAGAACTTCCAAGACTGTTTTAAAATCGTCCCGGATTGA
AGAGTACGATATTGCTTTGTTGGCTGATCTTAATCTCTGTGACGATGTAA
GAgctctaaaaataaaattgtcagAGTTAGCAGGTTCTTTTATCTTTCTG
CAATATCCCTCCAATACATTCACAGGGCATAAATTCGATTTTAACCTCGC
TAAGTGTAACCAATGTCCAACCCTATAAACGTCGGTTTTActcttttcaa
taaacaaagCAGCATGTGTagtaaaaaaatttatatcTGATCTTCGTAGA
TTCACACATTcggaaaatctcaaaaatccagCAAAAGAAACAAGTAATAC
TGTAATCAATCTGAAGCCTTTGAGGCCAGTCCTCGATGTTGACAAAACTT
TTACCATCCTTCTTAACATGTCTACTGTAATAGGCTCCTTCTTTTTAGAG
TTCTTCCCCACCAGCCTTTTTGCGGCCTCTAAAACATGTTCTAACATTCT
CGACTGCTTGAATTCATATCCCGAAATGTTATGAAAATACTTTATGGCCA
TTACGGTCGACTCtattattgaaaaagattttccttCTTGTATTGATCCG
ATTATANCAAAACATGTTCTAACATTATCGACTGCTTGAATTCATATCCC
GAAATGTTATGAAAATACTTTATGGCCATTACGGTCGACTCtattattga
aaaagattttccttCTTGTATTGATCCGATTATAAACAAAATAATGTGTT
GAATCTTTGCTGGGAATGGTTATATCTCTTTAAAACGATTAGACCAACTA
ACCCATTGTTTGAAATAACATTCATATTTTTTAATTGTGTTGTTAGCCCT
GGAACAAATCAATACCCCTGGTACCAGATTAACTAACGATTGTAACTCCG
GATCATTAACGTGAAAACTTTGtatgattttgcttgaaaccaaatctaaa
taaaataattatcgaTTAGAAAAACGTAAAACGGAATGATTAAATGTTTG
TCTCCTAATATGGACCTTTTATATTCCCCTTGTGATACGAAAGTCCTAGA
GTCATCATAAAACCGCTTTTCTCTCACGAAATCTTTAAAGACCCCTTCAC
TTTTTATTAAATATGGCCAAAACACCGCGGGAGGCCAATAGGGCACGATC
AAAATACCTCTTGTTCTTCCTTTAGAAactaaaaaatgtttaattgcTTT
GGGAATTAAATAGACCGGTGGCACAATGAGACAAAATTCTCCAGTCCAAT
CGAAGGAAAAAGCATCCGTTCTAAAATTTCCcggacaaaaatattttgaa
caaaaCCGATCATATTTCTTGTTGAAACTATCTGCAAATAAATCTATTGT
AATCTTGCCCCATTTTTTCTCTATTGTTCTCACAAATTCCTTTCTAATAA
ACCAGTCATCATAGTCTATTGTTTTACTTACTTTATCTGCTCTCTTATTG
TGTTTTCTAGCGATCCAAGTCACTGTCAATTTTATGTCCTTTNttttttt
ttattgttctcaCAAATTCCTTTCTAATAAACCAGTCATCATAGTCTATT
GTTTTACTTACTTTATCTGCTCTCTTATTGTGTTTTCTAGCGATCCAAGT
CACTGTCAATTTTATGTCCTTTTTCTTACAAATCATAAAAATGTCATTGG
CCAACCCTTGTAATAAATCTTTGTTACTGCCAATCCTGACGATCAATGCT
GTGCCAATGTTATCTGTGTGCCACAAAACCGTTTTATTCTCTAAAAACTG
GTCAAATGATTCCATAGAATATTTTATAGCCAATAACTCCCTATACGTGG
AATTTTCTCCTCTCTCTTCCTTTTGTAGATTTCTGTAGCAAACCAAATTA
TTTAAAACTGCTCCAATCCCTGTGGAACTGGCATCTGAAAAGACTTTTAA
CTCCGGAACTTCATATTTCTTTATGGCTCTTTTATTTAAAACACGtaaat
ttattttccaaaacAACACCTCCCTAAGGACGTCatgaaaaaatgtcaaa
ttcatTCTCTTATCCCAAGACACTCTAGATTCGATCATTTTATAAATTAA
ACGTGTTTTTAAACGAATGACATTTCCTAAaacaaatttcattgaaacta
TTTTGCCTGCTATACGAGATAACTCTCTTGCTGTAATGCGTGTTGGatgt
tgaaaaatgttttcaagtgAAGTTAATAAAGATTGGATGCGCTTTTCGGA
GATAGAGGCACTGGTGCTTCCAATGTCCGACTTCACCACAGACGAAACAC
GTGTTGAGTGGGACTGGATACCTGGCCGGTTGACTCTGTTGTGGAAGTGG
AGGTTTTGTGGGCCGACTCCTGCGGCTCCTTGATATAGAAAGGGCCGTTG
AAAAGGCGTGACCAATTGATGCTGTGGCAAATGCTGCTGTACGACCTGTT
GAGGTATCAAAGACAAACCTTGGATCGGATTTTGGAGATGTGGAAAAGGT
AAACTTTGGTTTGGATTTTGCTGAGTTGGCATAAACCTTTTGGCTGGTGG
CTGGTTgaagaaaaccgatttttgttttctttttgtcatGGCTCTACCTT
CTGCTCTTCGGAGCCTGGTATCGTCATCCGAGTTATCCGCCAAATCGTTA
GGCAAATATTCATTGATGGCATCCCAACCTGCTATTGACCGATCTGCGTA
TTTGACGATCTTCTGCCGTTTGACCAACTGCTCCTCCATTTTGTCGAGAA
CAGATGACAACCGTTTCCTAGAACCTGCCTCAAACAGAACCTTGGCTTCG
TTATTTAACTCATATAACTCTTGCACGAAATTGTATTGTAGTTTATTTga
taaagttttaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_71:317780..324631-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072154 ID=TCONS_00072154|Name=TCONS_00072154|organism=Clytia hemisphaerica|type=transcript|length=6852bp|location=Sequence derived from alignment at scaffold_71:317780..324631- (Clytia hemisphaerica)
TTTTTAAACCCAAGAACTTCCAAGACTGTTTTAAAATCGTCCCGGATTGA
AGAGTACGATATTGCTTTGTTGGCTGATCTTAATCTCTGTGACGATGTAA
GAGCTCTAAAAATAAAATTGTCAGAGTTAGCAGGTTCTTTTATCTTTCTG
CAATATCCCTCCAATACATTCACAGGGCATAAATTCGATTTTAACCTCGC
TAAGTGTAACCAATGTCCAACCCTATAAACGTCGGTTTTACTCTTTTCAA
TAAACAAAGCAGCATGTGTAGTAAAAAAATTTATATCTGATCTTCGTAGA
TTCACACATTCGGAAAATCTCAAAAATCCAGCAAAAGAAACAAGTAATAC
TGTAATCAATCTGAAGCCTTTGAGGCCAGTCCTCGATGTTGACAAAACTT
TTACCATCCTTCTTAACATGTCTACTGTAATAGGCTCCTTCTTTTTAGAG
TTCTTCCCCACCAGCCTTTTTGCGGCCTCTAAAACATGTTCTAACATTCT
CGACTGCTTGAATTCATATCCCGAAATGTTATGAAAATACTTTATGGCCA
TTACGGTCGACTCTATTATTGAAAAAGATTTTCCTTCTTGTATTGATCCG
ATTATANCAAAACATGTTCTAACATTATCGACTGCTTGAATTCATATCCC
GAAATGTTATGAAAATACTTTATGGCCATTACGGTCGACTCTATTATTGA
AAAAGATTTTCCTTCTTGTATTGATCCGATTATAAACAAAATAATGTGTT
GAATCTTTGCTGGGAATGGTTATATCTCTTTAAAACGATTAGACCAACTA
ACCCATTGTTTGAAATAACATTCATATTTTTTAATTGTGTTGTTAGCCCT
GGAACAAATCAATACCCCTGGTACCAGATTAACTAACGATTGTAACTCCG
GATCATTAACGTGAAAACTTTGTATGATTTTGCTTGAAACCAAATCTAAA
TAAAATAATTATCGATTAGAAAAACGTAAAACGGAATGATTAAATGTTTG
TCTCCTAATATGGACCTTTTATATTCCCCTTGTGATACGAAAGTCCTAGA
GTCATCATAAAACCGCTTTTCTCTCACGAAATCTTTAAAGACCCCTTCAC
TTTTTATTAAATATGGCCAAAACACCGCGGGAGGCCAATAGGGCACGATC
AAAATACCTCTTGTTCTTCCTTTAGAAACTAAAAAATGTTTAATTGCTTT
GGGAATTAAATAGACCGGTGGCACAATGAGACAAAATTCTCCAGTCCAAT
CGAAGGAAAAAGCATCCGTTCTAAAATTTCCCGGACAAAAATATTTTGAA
CAAAACCGATCATATTTCTTGTTGAAACTATCTGCAAATAAATCTATTGT
AATCTTGCCCCATTTTTTCTCTATTGTTCTCACAAATTCCTTTCTAATAA
ACCAGTCATCATAGTCTATTGTTTTACTTACTTTATCTGCTCTCTTATTG
TGTTTTCTAGCGATCCAAGTCACTGTCAATTTTATGTCCTTTNTTTTTTT
TTATTGTTCTCACAAATTCCTTTCTAATAAACCAGTCATCATAGTCTATT
GTTTTACTTACTTTATCTGCTCTCTTATTGTGTTTTCTAGCGATCCAAGT
CACTGTCAATTTTATGTCCTTTTTCTTACAAATCATAAAAATGTCATTGG
CCAACCCTTGTAATAAATCTTTGTTACTGCCAATCCTGACGATCAATGCT
GTGCCAATGTTATCTGTGTGCCACAAAACCGTTTTATTCTCTAAAAACTG
GTCAAATGATTCCATAGAATATTTTATAGCCAATAACTCCCTATACGTGG
AATTTTCTCCTCTCTCTTCCTTTTGTAGATTTCTGTAGCAAACCAAATTA
TTTAAAACTGCTCCAATCCCTGTGGAACTGGCATCTGAAAAGACTTTTAA
CTCCGGAACTTCATATTTCTTTATGGCTCTTTTATTTAAAACACGTAAAT
TTATTTTCCAAAACAACACCTCCCTAAGGACGTCATGAAAAAATGTCAAA
TTCATTCTCTTATCCCAAGACACTCTAGATTCGATCATTTTATAAATTAA
ACGTGTTTTTAAACGAATGACATTTCCTAAAACAAATTTCATTGAAACTA
TTTTGCCTGCTATACGAGATAACTCTCTTGCTGTAATGCGTGTTGGATGT
TGAAAAATGTTTTCAAGTGAAGTTAATAAAGATTGGATGCGCTTTTCGGA
GATAGAGTAAGTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCTTACAAAGTAAACAAAGGATGGCGCACAATATGAGCATATTT
ATTTTTCTTATAAGCATTTACTTTATAAGAATCAAATCAATAACTCTAGA
TAGACGGTGATATACCTTTCGGTAATTAGTTCTTACAAAGTAAACAAGGG
ATGGCGCACAATATGACATTATTTATTTTTCTTATAAGCATTTACTTTAT
AAGAATCAAATCAATAACTCTAGATAGACGGTGATATACCTTTCGGTAAT
TAGTTCTTACAAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGCATTTA
CTTTATAAGAATCAAATCAATAACTCTTTATAGACGGTAATATACCTTTC
GGTAATTAGTTCTTACAAAGTAAACAAGGGATGGCGCACAGTATAAGCTT
ACTTATTTTTCTTATAAGCATATACTTTATAAGAATCAAATCAATAACTC
TTGATAGACGGTGATATACCTTTCGGTAATTAGTTCTTACAAAGTAAACA
AGGGATGGCGAATAATATGAGCATATTTAATTTTTTTATAAGCATTTACT
TTATAAGAATCAAATCAATAACTCCTGATAGACGGTGATATAGCTTTCCG
GTAATTAGTTGTTCCAAAGTAAACAAGGAACAGCGCACAAAATGAGCTCA
TTTATTTTTCTTATAAGCATTTACTTTATAAGAATCAAATCAATAACTCT
AGATAGACGGTGATATACCTTTCGGTAATTAGTTCTTACAAAGTAAACAA
AGTATGGCGCACAATATGAGCATATTTATTTTTCTCATAAGCATATACTT
TATTAGAATCCAATCAATAACTCCTGATAGACGGTGATATAGCTTTCGGT
AATTAGTTGTTCCAAAGTAGACAAGGAACGGCGCACAATATGAGCTCATT
TATTTTTCTTATAAGCATTACTTTATAAGAATCAAATCAATAACTCTTTA
TAGACGGTAATATACCTTTCGGTAATTAGTTCTTACAAAGTAAACAAGGG
ATGGCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGGCGCACAATATGAGCTTACTTATTTTTCTTATAAGC
ATATACTTTATAAGAATCAAATCAATAACTCTTGATAGACGGTGATATAC
CTTTCGGTAATTAGCTGTTACAAAGTAAAGAAGCAATGGCACACAATATG
AAGTTTTTATTTTTCTTATAAGCATTAACTTTATAAGAATCAAATCAATA
AATCTCGATAAACGGTGATATACCTTTCGGTAATTAGTTTTTACAAAGTA
ATCAAGGGACGGCGCACATTATGAGCATATTTATTATTCTTATAAGCATT
TAATTTATAAGAATCAAATCAATAACTCTTGATAGACAGTAATATACCTT
TCGGTAATTAGCTCTTACAAAATAAACAAGAGATGGTGCACAATATGAGC
ATATTCATTTTTCTTATAGAAGCATTTGCTTTATAAGCATCAAATAAATA
ACTTTTGATAGACGGTGATATTACCTTTGTTTATTAGTTCTTAAAAATTA
AACAACAGTTGTTCTTAAATTGGTCTCTTTTTTTTAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCT
TCCAAAGCTTGGTCTACAAAATCCTTGTCCTGAAATGCTGATTTATTATT
TTTAAATTCAAAAGGGGGTGGGTTATATCGAAATGGTATTTTGTACCCAT
GTTCTATCGTATCCAAGATATGTGGGCTAGCCTCTAAAACCTCTCTCCAA
AATTGTGCATGTCTTCTAAGGTTCCCTTTTACCCTTGGCTTATTGTCAAA
TAAAATAAAATTAATCTTACCCTTATCCACCTCCGGATTTTTTAGGGCAC
TGGTGCTTCCAATGTCCGACTTCACCACAGACGAAACACGTGTTGAGTGG
GACTGGATACCTGGCCGGTTGACTCTGTTGTGGAAGTGGAGGTTTTGTGG
GCCGACTCCTGCGGCTCCTTGATATAGAAAGGGCCGTTGAAAAGGCGTGA
CCAATTGATGCTGTGGCAAATGCTGCTGTACGACCTGTTGAGGTATCAAA
GACAAACCTTGGATCGGATTTTGGAGATGTGGAAAAGGTAAACTTTGGTT
TGGATTTTGCTGAGTTGGCATAAACCTTTTGGCTGGTGGCTGGTTGAAGA
AAACCGATTTTTGTTTTCTTTTTGTCATGGCTCTACCTTCTGCTCTTCGG
AGCCTGGTATCGTCATCCGAGTTATCCGCCAAATCGTTAGGCAAATATTC
ATTGATGGCATCCCAACCTGCTATTGACCGATCTGCGTATTTGACGATCT
TCTGCCGTTTGACCAACTGCTCCTCCATTTTGTCGAGAACAGATGACAAC
CGTTTCCTAGAACCTGCCTCAAACAGAACCTTGGCTTCGTTATTTAACTC
ATATAACTCTTGCACGAAATTGTATTGTAGTTTATTTGATAAAGTTTTAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044811XLOC_044811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072154-exon-scaffold_71-1575043694:322426..324631TCONS_00072154-exon-scaffold_71-1575043694:322426..324631Clytia hemisphaericaexon
TCONS_00072154-exon-scaffold_71-1575043694:317780..318386TCONS_00072154-exon-scaffold_71-1575043694:317780..318386Clytia hemisphaericaexon
TCONS_00072154-exon-scaffold_71-1510915933:322426..324631TCONS_00072154-exon-scaffold_71-1510915933:322426..324631Clytia hemisphaericaexon
TCONS_00072154-exon-scaffold_71-1510915933:317780..318386TCONS_00072154-exon-scaffold_71-1510915933:317780..318386Clytia hemisphaericaexon
TCONS_00072154-exon-scaffold_71-1491911889:322426..324631TCONS_00072154-exon-scaffold_71-1491911889:322426..324631Clytia hemisphaericaexon
TCONS_00072154-exon-scaffold_71-1491911889:317780..318386TCONS_00072154-exon-scaffold_71-1491911889:317780..318386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:317780..324631 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.990877	1.05254	0.362018	0.275709	0.312344	0.203262	0.332808	0.491954	0.160733	0.170652	0.124229	0.0635161	0.289956	0.329352	0.0309454	0.0166046	0.0818218	0.0524155	0.0985977	0.0454661	0.0790366	0.115654	0.561578	0.614673	0.0731392	0.02611	0	0.0598127	0.211707	0.178588
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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