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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072152 ID=TCONS_00072152|Name=TCONS_00072152|organism=Clytia hemisphaerica|type=transcript|length=1640bp AAAGAAAGAAACAGTCATTAACAGTTCTGGGGCTAAATTGTTGCAGTGGC AGAAGTTTGATTTCTGTTGCGTGTGATGGCTCCTCTTAAAATAAGAATGG TCACTTATTCCAATCTGATGGGTATGGAAATGTTGGCAAATGACTTGCAA AAACCAAAACCGTCACTTTCAGTCAAAACGGAGAAGAACATGAACGAAGC TGACGAGAAATTGGCAACATTGAATTATGTCTCTGATCTCAAAACAAAAA CGAAAAGCAAAATGTTGAAAGAATATGAACAAAAGATGGGAAAACCAGGA AACAAACGACCTTTATCCAGAATTCCATTATGGTACTTTCTTCATGAGAT TCTGGATGTTGAAAGATGCAATGATATGATTGGTTGGGAATGTGAACCAG AGCTGATTTTCACCATCAAAAAGCCTAAAGAGTTGGCATGCCTTTGGGGA CAAATCAAGAGCCGTGAAAACATGACATACGCTAAACTCGCCAGAGGGAT TAGATATTATTATGGCAAAGGAGTTATTGAAAAGtTTAATGGCAAACGAT TTTGTTATCAATTCATCGTCTCCAAGAAAACCAAAGCTGTTTTATCCAAA CGTAAAAATATTCCTCAAGAAATTATCAGTACGAAATCACGACATGATCG TAAACGAAAATCACCATTACCAGATACTTATAAAAACGATTCTAAGAAGT CATGGGAAAATAGAAGTCAAGATGGATTTACCAACACCTCGGTCAAAGAT TGGACTAGCGATGATGATGATATCATTTCAGATTCTGATTTAAGTAGTTT AGATCAATGTATATCTGATATTTTCACTGACCCGAAATTTGCTACTTTCT TCCCAGATGTTTCACTTGAGAATAAAGTATTCCCAACATCAGTATCAACC ACGAAATTAGATTCAGATATGTTCATAATGACCAGACAACCATCAGAACT GGGAATATTTCCAACGTTAGATGATATGAGTCAATTTATTTCTACATCAG GACCTACCGAAACTTTAACAGATTGTCTCCAACAGAAAGAAGATCTCGTT GATTTATCCAATTTACAAGATTCCCAACTCTTTGATATTTATGACCAAGA TAATAGCTTTGATGGTTACCAGCCAAAACAATACAGAGATCACCAAGAAG TTCAATGGGatcgcaaaaaatcgaaaagtgAATCTGAAGCTTTTTTCCAA GACTTTTTTAACCAGAACACTAGTTCTTTACAGCGTTCATCAGCTACTGT CAGATCTTTACCAGACTTTTCAATTATTGACAACAATGTGTCAACATTAA AACCTGAAGACCAATATGGATTTTTCACTAATATGCTGTTAGACCAAGAA GATACACATACACAAAGCAGATCATCATCTCTTAAtgattatttcaattt ttaaaaacattcgatGACATTTTATTAATAAAGATGGGgctgaaaaagag aaaattttatataaaaaaaattattaacttagaatttttaaattaaattc caTGACGCaattgtaaataaaaattaacCTTATTTTTGTTACATATGTAT AGTTTTATAGAAAGAATTGTAGCGAATATATTTACTTGTGTTTTAAACTG ACACTATAGTTTGATAAAAGAAGacaaaagttgataaaat Run BLAST on NCBI transcript from alignment at scaffold_71:293533..301577- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072152 ID=TCONS_00072152|Name=TCONS_00072152|organism=Clytia hemisphaerica|type=transcript|length=8045bp|location=Sequence derived from alignment at scaffold_71:293533..301577- (Clytia hemisphaerica) AAAGAAAGAAACAGTCATTAACAGTTCTGGGGCTAAATTGTTGCAGTGGC
AGAAGTTTGATTTCTGTTGCGTGTGATGGCTCCTCTTAAAATAAGGTAAG
CTGTGTAAAACGTTCCATATACTGTTTAGCCAGAACTATTTCAACTAGTT
TTTTTAATTACTATCTTTGCAAGGGCTACGGTAAGGACAGATAGCATTGA
AAGATTTTTGTATTAAGAACGACAATTTTCTGGGTAACTTTTCTTCATTT
TTGCAAAACAGTGCGAGCGAGCGAGTTTGAGGATTGTTCGATTGTGATGT
ACGTTGTTGAGTAAAAATTTAAGGTGTAATACGTGATTTGGGCCGTTTTC
ATCGACAATGCATGTTATGAGATTATTTTAAAGAAGTTTTTCAGAATCGT
AATGGGAAATAATGAATCTAAACTAATGAACCCATGATTTGAACATGGAA
GTCACTGTGGAGTCCTGGGGCAGTAAACAAGAAAGCCATTCCATCAATTG
GTCAACAATTTTTTTTGAAAGGTTTTCCAGACTACCAAAGATATTGGACT
TAAATATTGATTTAATATGTTTATTAATTATTAGTGAAAAACAATTGCTT
CCAGGGACAATTTTAATTTGTTTAAATTGGCGATTGAGACCTCAAAACAA
TTTTAGTTGATTTCTTATGATTGTAGATTTACCCTGTGAAAGCAAATACA
CGTTTTTTTTTATAAGAACAAACTGTATAAGAACATAAGACTTCGATGGC
CAAACTATTAAGAACAAGTTAAGAACAATATTCACAAAATGGTGAAAATA
AGAACACATGTTAAGAACATTTTTAGGCTTGAAACTCAAAAAGTTAAAAA
CATCCGAAGGCTTTACATATTTTGGATGTTCTTATAAAAAAAGTCTATTT
AAAATGAGCAATATTCACAAATAATGATTTGGTATGGAAGTGAGGCTCGA
TAAATTTGGTATCATTATAATTAGCATTTTATGTTAAGCAATTAATTGTA
CAACTCACAAACAGAAAATTGTCATAAATACGTCAATTTAAAGGAAAAAT
ACTAATTGCTTTGCGGTAGCGAAATAATTGATGGTTTTTCACTCAAAGCC
CATTATGAATTTTTAATAGTGCAAAGAGCAAAGAAAATCTGAGCCATTTA
TGTAACCAGGCTACAATTGACAGAACTTTCGTCTTTTTTTTTTAAAGGGG
GCGAAAAATGAACCGCAAATTCGTGAATTTCCGAGACTCTAAAATGAAAG
TAAAAATGTGCTCGAGAAGATTTTTTTGATTGTGGTGGAGGAGTGAAAAC
GGTTCTTAACGAAATAAGGAAAAAAGTTTTATTCTTTTAAAACAGGCAAT
TTAAATTGAGGAATCTTTCTATAAAGAAAAAACTATTTAAGAACATAAGG
CTTCGAAGCCCAAAATATTATGAACAAGTTAAGATTATTTTAAGGCTTAA
CAGTCTCTAAAACTCCCGATTTCTTATGAAAATGGACAAAAATACTCACA
AAATGGTGAAAATAAGAACAAAATAAGAAAATTCTTAGGCTTATAATTCA
AAAAATTCATAACATCTGAGGCCATTAGTATGGGGGACCCCGTCGTGTGT
TCGTAGAAGGTTACGTATAAGATCTTCCCAACCCCGTTTGATTAGCCCAC
TTTTTTAACATACAAACCTATGTAACTATATATTGTGAAGTATTACAAAA
AAGCAGGTCGGTAACTTTGTTAATTTGTTCAATTTAGGGCCATTCTTTAG
GCTTCCCGCTTCCCACATAGACTGAAGAAAGAGTTCCAGAATCAAGAAAA
AATTTCAACTGCAATTTAATCTTCTCGCTATGCTGGCACCGAAACTGTGG
TTAACGAATATACAGCAGCCCATTATTTTGCTTCACCTGCATCAACTACT
GTTTTGTTTCAAGATATCTTTTATATCAGACAGAGCGAGCCCAATCCTTG
GACTTCAAAGCCCCGAAGAGACTAGACCCGAAACTCCTAGATGGGAAATG
AAGCCACTTATTTCTCATCCCAAACGCGTGACCGCATGGTTTTCACAAAG
ACACCAGATTGAAAGTAAAACATATCAATAAAATTTCGAAAAATATGCCG
CTTAAAAACAAATGAAGGGCTTGATGCTTAATTCAATCCGTAATTCTAAA
TGCGGCGCAAACGTTAGGGCTTCACATTTTCTTGCTTGAGTTGAGAAAGG
CTAAAAGATTCATTCGGCTTTAAACTCAATGGCTCAATCACGTACAATTT
GTACTCTGAGTACAATTTAATATCACAAGATTCGCATTGTCAGCAATTTC
TCTTCTGACGTCTATATTGGCTTAAAATGAGGGGGTTGTCTTTTGATCTC
TTTACGTCTTATTTCATATATTAAATTCTTGATCCCTCTGCAAAAAGATT
TGTTACTGTGTATCATAAACATTATACGTCTTTTTATAAGAACATCCAAA
AATTTTAAAACCTTCGGATGTTCTTTAATTTTTTGAGTTCTAAGCTTAAA
AATGTTTTTAACATATGTTCTTACATGTTCTTTACATGTCCATTTTCCTA
AGAAAATAGGTGTTTTAGGGTCCGAAAAGCCTTAAAATTTTCTTAACTTA
TTCTTAACATTTTTGCCATCGAAGCCTTATTTAGCTTGTTTCTTATAAAA
AAGGAGTAATTTAACAGTTAGAAAATGTTAACCATGGCAACTCAAGACAT
TCGTCTTTTTTATATGTATATTCAATATTTCTTTGACGTCATAATTTGTC
ATTTTTGAGTAATTTTGCTTTTGAGACCGAAAATTTCAGCAAATCATGCG
AGCCCCTAAACGAAACTGAATGGCCAATTTGGCCACTCCGACATGAAATA
TTACTGGGAACCACAATCATGGAAAAAAATGTTTGAGAAAAACACAGGTA
TTTGTAGTAAAAATGTAGAAAAAAGCCCCCCCCCTTCCCCCAGCTGCAAT
GTTCAGTCCGCAAGGCCGTCCACACCAAGCACTGAACATTACAAATGGGG
AAGCAGCTTAGAATTAACTTTTGTCTCAACATTTGTGTCCATGATTGCAG
TGTGACTATAAAAAATCAAAAAAAATCAATCATTTGATAGCCTGGATCTC
CAACTTTTAACCTTTTTTTATTTCGATACTTCTGTTTTTGCCTTTATAGG
TTATTTAAATCTGCGTTGGCCCGTCCTTAGCCTGTGCGCAATCATGACTA
GACGAAAAATATGCATGCGTATACTAGGCCTACAGACAATTGTTGCATTA
CTTTTGCTTGGGCATTTTTATAGCCGTGTAGCCGTCTGCAATAACATACA
AAAAGACACTCGATGGCAAATCTCAAGGAAATAAATAGACCAGCAAATCT
TAATCTCAATTTCAGTATTATCAGTGTAGCCTGAGCTTAAGTCGGTAAAC
CAGAAACAAACAGGATATCCAGGCTAAACATTACTGGTTGAGAAAAAAAC
AGTCTAAAAGTGATAGAGCTATGGGCCTTCTGTTTGCGGTAGAATTTTGA
TATCATTTCAATCAGCATTAATTCAAACCTGATATCTAGATAATCATTGA
CAATGCGAGTGTTTTTATCAATCAAAAAGGCGGTATTTCTTTCAATAATG
TTTAAAAAGGATGCCATAATAATTATAGGTACGCATCCGATGATCAAAAT
TAGTTCTATCTTTACTGGGACTATTTATCAATCAGGCTAGTTATCTTGTG
GTTGATTTCTGATCATTTTTTTATGACGACGCCAATAAATTTCTTCCGAT
CCACATTCTCATTCGGAAACGCATCAAACATTTTACTTCAAAATGTTTGA
GACATAAAATTAAGACCTAAAAGCTATTGCCGAAAACCAACCTTGTCCCC
GTGTATCCCAGTCTTTTTTTACGTTACTGAGACCATGTTCGCACGTGACA
GTTCCGAAACGAAATGAAGCCATTCTATTAGTTACATTCAAGTGTTACGT
CACTTCTAACCAATAGAATGGCTTCATTCCGCTTCGGAGCGAAACGGAAC
CGTCACGTGTAAACATGGTCTGATACACACCCCCTGCGTATTATCTGGCG
CTTTCAGTGATGCATAAATAAGCTGATAATACATAGAGGGCAAGGTTGTC
CGAAAGTTGTGCGGCTACAGCGCAGCTTTAATACAAACGTTAGATTGAAA
CACACTTTAAACTGATTCAGAAAAGATTGTATTTGTTTATCATGGTGTAT
TTTCATAAGTTCTAAATAGATCAAGCTACCTTCCCGAAGAGAGAATTGTT
AAACAAATAAAATTTAAACTTGGAAAGAAAGTTAATACTGCATCATAAAC
ATTACATCATTTCTAACCAATAGCTTCCCAGTATTTGAAAAAAAAAATCT
TATTGCATACGTCAAATCTAAATCTATGTCATTGTTTCGCTATTAGAAAA
ATATTTCAATTAGTCAAGCCCGATAAGTCACCCAACACGATATGGTAGTT
GCGGCTTAGATTGAGAAAGCAAAATTTTCCTAAACTAGGATTGGCGAAAC
GATCTGATGACTTGATTTAACGATGTTTTCACAAATTTCTCTTTTTGCCA
AAAATAATCCAGGTGACAGGGTTTAAAACGCGAATGAAAAAACGATAGGA
AAAAGCGACAGGTAGAGAAGTCGGACGTCGTTTAATTTATGACGAAAATC
AACAATTAATTTACCAAACCCAAGTATTGATTTAATTCGTAAGAATTGAT
TTAGTTGATTGAGCCTTTCAAGTCTATTAAAATGGCCGTCAAAAGTTGTT
CTCAAAAGCCCGATTATCTTAATAAACTTTTTTTCGTTGACTTAGAAAAA
TATAAGAGTGTTTGGTATTTCCAATAATTGATAAATTTCTTGGAGAAAAT
GATGAACTTCTATATTTGGAAACGGTTTTTGAAAAAAAACTAAATTACTG
TCTACTGCGGAAGCTAAAAGCCTAAATGAGTATAATAATAAATTATCATA
ATAGAGAAGTAACAAAAACAAAAGATGTTACATTTAATTATGTGAAAATG
ACCTTATCTATTGTTTTCTTCAATTTGAGAAGAATCAATTATCAAAAGAC
CTTCGAATCCTGAGTTTGAAGACTTTCGATTCCAAGCCTCCTACATATGA
TTTATTCAATCAACCGAAAGTCCCACGCGATACTAAATTATTCTTTCACA
TAATTAACGTAAGAACTCGGCATTCCGTTCTCGCTAAACGTGGGAAGATA
ATTATGCGTATATAAATGTTCGTTTTTCTCTGCATAAATCATCATATTAA
CTTTGCATAATCAACGAGTGAACATCAATTTATCTTAAGAGTCCATCATT
AAGGTTTTCGCTAGAGCACCAACAGTCAGTATTAGCTCACAAAAAATTGT
TACGAGGTTATCATCGGCTTTTCAACTTTCTTACACGTACAGAATGGTCA
CTTATTCCAATCTGATGGGTATGGAAATGTTGGCAAATGACTTGCAAAAA
CCAAAACCGTCACTTTCAGTCAAAACGGAGAAGAACATGAACGAAGCTGA
CGAGAAATTGGCAACATTGAATTATGTCTCTGATCTCAAAACAAAGTAAG
TAACACTAAATCTTTTGATTTGGAATTTTTTGACTTTGATAGTTTCGGCA
ATGCATGAAAGCAGAGCTAATATAGTATCAATTTCAAAATATTATACTTC
TTTAAAATAATACACGTTTTTTTCTATATAAGAACAAACTATCTAAGAAC
ATAAGGCTTCGCTGGCCAAAATGTTAAGAGCAAGTTAAGAACATTTTAAG
GCTCTGTGGACTCAAAAACACTCATTTCTTAAGAAAATGGTAAAAAATAT
TCACAAAATGGTCAAAATAAGAACAAGTTAAGCACATTTTTAGGCTTAAA
ACTCAAAAAGTTAAGAACATCCAAAGGCTTCAAAAATTTTGGATGTTCTT
ATAAAAAACGTGTACGTTATATGTGTGATATTTTAATGAAATATAGATTT
TGAAATTCGAAAAAATCTTGATATTTTGAAGTCTAATTTCGAGCCTATCG
GTTTAGTTTTATTTCTTATGAATCTAGAAAACGTCAAACTCTCGCTTTTA
GTACTTGAAAAAAATTCAATCTCTTAAGTTCTTTCAATACAAAACTACAT
AACCATTATCACCCCTAATATCACTAATTGAATTTTTTATCAATTTACAG
AACGAAAAGCAAAATGTTGAAAGAATATGAACAAAAGATGGGAAAACCAG
GTACTTAAATTTTTTAGAACATTCCAAAAGATTTCAATCAATCCCAACAA
CCTGAATAGTTTCTCTCAAAATATGTCTACTTACTATTTAAAAATTTTAC
TATAGTAATTAATATATATTCTCTCCCCAAACTTTCACAGAAATGTTAGT
TCTTAAAGCTTTCAAACCCTACTGAAAGTAGTATTCAAATTCAATCAATT
TCAAAATCATTTGTCTTTATACAGCTAACAAGATTTTTGTGTTGATGTTA
AAATTTAATATTAAACTTCGTATCATTTTCTAGGAAACAAACGACCTTTA
TCCAGAATTCCATTATGGTACTTTCTTCATGAGATTCTGGATGTTGAAAG
ATGCAATGATATGATTGGTTGGGAATGTGAACCAGAGCTGATTTTCACCA
TCAAAAAGCCTAAAGAGTTGGCATGCCTTTGGGGACAAATCAAGAGCCGT
GAAAACATGACATACGCTAAACTCGCCAGAGGGATTAGATATTATTATGG
CAAAGGAGTTATTGAAAAGGTATACTATTTTTTATTCCTGCGCAAATGTC
ATTAATCGTGGTTGAACATTCAAAGTTATTGGATCAAAATTCAATGCATC
AGTTTTTCATAGAAACGTTTTCAAAGAATCATTTGTTAGTTTGGTATTCA
AAAAATCTTGGAATATAAAGAAAATGCCTAGACCACAAATCAATGTTAAA
TGGTACTTTATGGTAACATTTCTTTAATTTATTTTATAGTTTAATGGCAA
ACGATTTTGTTATCAATTCATCGTCTCCAAGAAAACCAAAGCTGTTTTAT
CCAAACGTAAAAATATTCCTCAAGAAATTATCAGTACGAAATCACGACAT
GATCGTAAACGAAAATCACCATTACCAGATACTTATAAAAACGATTCTAA
GAAGTCATGGGAAAATAGAAGTCAAGATGGATTTACCAACACCTCGGTCA
AAGATTGGACTAGCGATGATGATGATATCATTTCAGATTCTGATTTAAGT
AGTTTAGATCAATGTATATCTGATATTTTCACTGACCCGAAATTTGCTAC
TTTCTTCCCAGATGTTTCACTTGAGAATAAAGTATTCCCAACATCAGTAT
CAACCACGAAATTAGATTCAGATATGTTCATAATGACCAGACAACCATCA
GAACTGGGAATATTTCCAACGTTAGATGATATGAGTCAATTTATTTCTAC
ATCAGGACCTACCGAAACTTTAACAGATTGTCTCCAACAGAAAGAAGATC
TCGTTGATTTATCCAATTTACAAGATTCCCAACTCTTTGATATTTATGAC
CAAGATAATAGCTTTGATGGTTACCAGCCAAAACAATACAGAGATCACCA
AGAAGTTCAATGGGATCGCAAAAAATCGAAAAGTGAATCTGAAGCTTTTT
TCCAAGACTTTTTTAACCAGAACACTAGTTCTTTACAGCGTTCATCAGCT
ACTGTCAGATCTTTACCAGACTTTTCAATTATTGACAACAATGTGTCAAC
ATTAAAACCTGAAGACCAATATGGATTTTTCACTAATATGCTGTTAGACC
AAGAAGATACACATACACAAAGCAGATCATCATCTCTTAATGATTATTTC
AATTTTTAAAAACATTCGATGACATTTTATTAATAAAGATGGGGCTGAAA
AAGAGAAAATTTTATATAAAAAAAATTATTAACTTAGAATTTTTAAATTA
AATTCCATGACGCAATTGTAAATAAAAATTAACCTTATTTTTGTTACATA
TGTATAGTTTTATAGAAAGAATTGTAGCGAATATATTTACTTGTGTTTTA
AACTGACACTATAGTTTGATAAAAGAAGACAAAAGTTGATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072152-exon-scaffold_71-1575043694:301483..301577 | TCONS_00072152-exon-scaffold_71-1575043694:301483..301577 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1575043694:296033..296185 | TCONS_00072152-exon-scaffold_71-1575043694:296033..296185 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1575043694:295378..295427 | TCONS_00072152-exon-scaffold_71-1575043694:295378..295427 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1575043694:294859..295094 | TCONS_00072152-exon-scaffold_71-1575043694:294859..295094 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1575043694:293533..294638 | TCONS_00072152-exon-scaffold_71-1575043694:293533..294638 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1510915933:301483..301577 | TCONS_00072152-exon-scaffold_71-1510915933:301483..301577 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1510915933:296033..296185 | TCONS_00072152-exon-scaffold_71-1510915933:296033..296185 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1510915933:295378..295427 | TCONS_00072152-exon-scaffold_71-1510915933:295378..295427 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1510915933:294859..295094 | TCONS_00072152-exon-scaffold_71-1510915933:294859..295094 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1510915933:293533..294638 | TCONS_00072152-exon-scaffold_71-1510915933:293533..294638 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1491911889:301483..301577 | TCONS_00072152-exon-scaffold_71-1491911889:301483..301577 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1491911889:296033..296185 | TCONS_00072152-exon-scaffold_71-1491911889:296033..296185 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1491911889:295378..295427 | TCONS_00072152-exon-scaffold_71-1491911889:295378..295427 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1491911889:294859..295094 | TCONS_00072152-exon-scaffold_71-1491911889:294859..295094 | Clytia hemisphaerica | exon |
TCONS_00072152-exon-scaffold_71-1491911889:293533..294638 | TCONS_00072152-exon-scaffold_71-1491911889:293533..294638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_71 | supercontig | scaffold_71:293533..301577 - |
Blast
The following BLAST results are available for this feature:
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