TCONS_00072151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072151
Unique NameTCONS_00072151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072151 ID=TCONS_00072151|Name=TCONS_00072151|organism=Clytia hemisphaerica|type=transcript|length=1695bp
AAAAAAGCAGGTCGGTAACTTTGTTAATTTGTTCAATTTAGGGCCATTCT
TTAGGCTTCCCGCTTCCCACATAGACTGAAGAAAGAGTTCCAGaatcaag
aaaaaatttcaactgCAATTTAATCTTCTCGCTATGCTGGCACCGAAACT
AATGGTCACTTATTCCAATCTGATGGGTATGGAAATGTTGGCAAATGACT
TGCAAAAACCAAAACCGTCACTTTCAGTCAAAACGGAGAAGAACATGAAC
GAAGCTGACGAGAAATTGGCAACATTGAATTATGTCTCTGATCTCAAAAC
AAAAACGAAAAGCAAAATGTTGAAAGAATATGAACAAAAGATGGGAAAAC
CAGGAAACAAACGACCTTTATCCAGAATTCCATTATGGTACTTTCTTCAT
GAGATTCTGGATGTTGAAAGATGCAATGATATGATTGGTTGGGAATGTGA
ACCAGAGCTGATTTTCACCATCAAAAAGCCTAAAGAGTTGGCATGCCTTT
GGGGACAAATCAAGAGCCGTGAAAACATGACATACGCTAAACTCGCCAGA
GGGATTAGATATTATTATGGCAAAGGAGTTATTGAAAAGtTTAATGGCAA
ACGATTTTGTTATCAATTCATCGTCTCCAAGAAAACCAAAGCTGTTTTAT
CCAAACGTAAAAATATTCCTCAAGAAATTATCAGTACGAAATCACGACAT
GATCGTAAACGAAAATCACCATTACCAGATACTTATAAAAACGATTCTAA
GAAGTCATGGGAAAATAGAAGTCAAGATGGATTTACCAACACCTCGGTCA
AAGATTGGACTAGCGATGATGATGATATCATTTCAGATTCTGATTTAAGT
AGTTTAGATCAATGTATATCTGATATTTTCACTGACCCGAAATTTGCTAC
TTTCTTCCCAGATGTTTCACTTGAGAATAAAGTATTCCCAACATCAGTAT
CAACCACGAAATTAGATTCAGATATGTTCATAATGACCAGACAACCATCA
GAACTGGGAATATTTCCAACGTTAGATGATATGAGTCAATTTATTTCTAC
ATCAGGACCTACCGAAACTTTAACAGATTGTCTCCAACAGAAAGAAGATC
TCGTTGATTTATCCAATTTACAAGATTCCCAACTCTTTGATATTTATGAC
CAAGATAATAGCTTTGATGGTTACCAGCCAAAACAATACAGAGATCACCA
AGAAGTTCAATGGGatcgcaaaaaatcgaaaagtgAATCTGAAGCTTTTT
TCCAAGACTTTTTTAACCAGAACACTAGTTCTTTACAGCGTTCATCAGCT
ACTGTCAGATCTTTACCAGACTTTTCAATTATTGACAACAATGTGTCAAC
ATTAAAACCTGAAGACCAATATGGATTTTTCACTAATATGCTGTTAGACC
AAGAAGATACACATACACAAAGCAGATCATCATCTCTTAAtgattatttc
aatttttaaaaacattcgatGACATTTTATTAATAAAGATGGGgctgaaa
aagagaaaattttatataaaaaaaattattaacttagaatttttaaatta
aattccaTGACGCaattgtaaataaaaattaacCTTATTTTTGTTACATA
TGTATAGTTTTATAGAAAGAATTGTAGCGAATATATTTACTTGTGTTTTA
AACTGACACTATAGTTTGATAAAAGAAGacaaaagttgataaaat
Run BLAST on NCBI

transcript from alignment at scaffold_71:293533..299881-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072151 ID=TCONS_00072151|Name=TCONS_00072151|organism=Clytia hemisphaerica|type=transcript|length=6349bp|location=Sequence derived from alignment at scaffold_71:293533..299881- (Clytia hemisphaerica)
AAAAAAGCAGGTCGGTAACTTTGTTAATTTGTTCAATTTAGGGCCATTCT
TTAGGCTTCCCGCTTCCCACATAGACTGAAGAAAGAGTTCCAGAATCAAG
AAAAAATTTCAACTGCAATTTAATCTTCTCGCTATGCTGGCACCGAAACT
GTGGTTAACGAATATACAGCAGCCCATTATTTTGCTTCACCTGCATCAAC
TACTGTTTTGTTTCAAGATATCTTTTATATCAGACAGAGCGAGCCCAATC
CTTGGACTTCAAAGCCCCGAAGAGACTAGACCCGAAACTCCTAGATGGGA
AATGAAGCCACTTATTTCTCATCCCAAACGCGTGACCGCATGGTTTTCAC
AAAGACACCAGATTGAAAGTAAAACATATCAATAAAATTTCGAAAAATAT
GCCGCTTAAAAACAAATGAAGGGCTTGATGCTTAATTCAATCCGTAATTC
TAAATGCGGCGCAAACGTTAGGGCTTCACATTTTCTTGCTTGAGTTGAGA
AAGGCTAAAAGATTCATTCGGCTTTAAACTCAATGGCTCAATCACGTACA
ATTTGTACTCTGAGTACAATTTAATATCACAAGATTCGCATTGTCAGCAA
TTTCTCTTCTGACGTCTATATTGGCTTAAAATGAGGGGGTTGTCTTTTGA
TCTCTTTACGTCTTATTTCATATATTAAATTCTTGATCCCTCTGCAAAAA
GATTTGTTACTGTGTATCATAAACATTATACGTCTTTTTATAAGAACATC
CAAAAATTTTAAAACCTTCGGATGTTCTTTAATTTTTTGAGTTCTAAGCT
TAAAAATGTTTTTAACATATGTTCTTACATGTTCTTTACATGTCCATTTT
CCTAAGAAAATAGGTGTTTTAGGGTCCGAAAAGCCTTAAAATTTTCTTAA
CTTATTCTTAACATTTTTGCCATCGAAGCCTTATTTAGCTTGTTTCTTAT
AAAAAAGGAGTAATTTAACAGTTAGAAAATGTTAACCATGGCAACTCAAG
ACATTCGTCTTTTTTATATGTATATTCAATATTTCTTTGACGTCATAATT
TGTCATTTTTGAGTAATTTTGCTTTTGAGACCGAAAATTTCAGCAAATCA
TGCGAGCCCCTAAACGAAACTGAATGGCCAATTTGGCCACTCCGACATGA
AATATTACTGGGAACCACAATCATGGAAAAAAATGTTTGAGAAAAACACA
GGTATTTGTAGTAAAAATGTAGAAAAAAGCCCCCCCCCTTCCCCCAGCTG
CAATGTTCAGTCCGCAAGGCCGTCCACACCAAGCACTGAACATTACAAAT
GGGGAAGCAGCTTAGAATTAACTTTTGTCTCAACATTTGTGTCCATGATT
GCAGTGTGACTATAAAAAATCAAAAAAAATCAATCATTTGATAGCCTGGA
TCTCCAACTTTTAACCTTTTTTTATTTCGATACTTCTGTTTTTGCCTTTA
TAGGTTATTTAAATCTGCGTTGGCCCGTCCTTAGCCTGTGCGCAATCATG
ACTAGACGAAAAATATGCATGCGTATACTAGGCCTACAGACAATTGTTGC
ATTACTTTTGCTTGGGCATTTTTATAGCCGTGTAGCCGTCTGCAATAACA
TACAAAAAGACACTCGATGGCAAATCTCAAGGAAATAAATAGACCAGCAA
ATCTTAATCTCAATTTCAGTATTATCAGTGTAGCCTGAGCTTAAGTCGGT
AAACCAGAAACAAACAGGATATCCAGGCTAAACATTACTGGTTGAGAAAA
AAACAGTCTAAAAGTGATAGAGCTATGGGCCTTCTGTTTGCGGTAGAATT
TTGATATCATTTCAATCAGCATTAATTCAAACCTGATATCTAGATAATCA
TTGACAATGCGAGTGTTTTTATCAATCAAAAAGGCGGTATTTCTTTCAAT
AATGTTTAAAAAGGATGCCATAATAATTATAGGTACGCATCCGATGATCA
AAATTAGTTCTATCTTTACTGGGACTATTTATCAATCAGGCTAGTTATCT
TGTGGTTGATTTCTGATCATTTTTTTATGACGACGCCAATAAATTTCTTC
CGATCCACATTCTCATTCGGAAACGCATCAAACATTTTACTTCAAAATGT
TTGAGACATAAAATTAAGACCTAAAAGCTATTGCCGAAAACCAACCTTGT
CCCCGTGTATCCCAGTCTTTTTTTACGTTACTGAGACCATGTTCGCACGT
GACAGTTCCGAAACGAAATGAAGCCATTCTATTAGTTACATTCAAGTGTT
ACGTCACTTCTAACCAATAGAATGGCTTCATTCCGCTTCGGAGCGAAACG
GAACCGTCACGTGTAAACATGGTCTGATACACACCCCCTGCGTATTATCT
GGCGCTTTCAGTGATGCATAAATAAGCTGATAATACATAGAGGGCAAGGT
TGTCCGAAAGTTGTGCGGCTACAGCGCAGCTTTAATACAAACGTTAGATT
GAAACACACTTTAAACTGATTCAGAAAAGATTGTATTTGTTTATCATGGT
GTATTTTCATAAGTTCTAAATAGATCAAGCTACCTTCCCGAAGAGAGAAT
TGTTAAACAAATAAAATTTAAACTTGGAAAGAAAGTTAATACTGCATCAT
AAACATTACATCATTTCTAACCAATAGCTTCCCAGTATTTGAAAAAAAAA
ATCTTATTGCATACGTCAAATCTAAATCTATGTCATTGTTTCGCTATTAG
AAAAATATTTCAATTAGTCAAGCCCGATAAGTCACCCAACACGATATGGT
AGTTGCGGCTTAGATTGAGAAAGCAAAATTTTCCTAAACTAGGATTGGCG
AAACGATCTGATGACTTGATTTAACGATGTTTTCACAAATTTCTCTTTTT
GCCAAAAATAATCCAGGTGACAGGGTTTAAAACGCGAATGAAAAAACGAT
AGGAAAAAGCGACAGGTAGAGAAGTCGGACGTCGTTTAATTTATGACGAA
AATCAACAATTAATTTACCAAACCCAAGTATTGATTTAATTCGTAAGAAT
TGATTTAGTTGATTGAGCCTTTCAAGTCTATTAAAATGGCCGTCAAAAGT
TGTTCTCAAAAGCCCGATTATCTTAATAAACTTTTTTTCGTTGACTTAGA
AAAATATAAGAGTGTTTGGTATTTCCAATAATTGATAAATTTCTTGGAGA
AAATGATGAACTTCTATATTTGGAAACGGTTTTTGAAAAAAAACTAAATT
ACTGTCTACTGCGGAAGCTAAAAGCCTAAATGAGTATAATAATAAATTAT
CATAATAGAGAAGTAACAAAAACAAAAGATGTTACATTTAATTATGTGAA
AATGACCTTATCTATTGTTTTCTTCAATTTGAGAAGAATCAATTATCAAA
AGACCTTCGAATCCTGAGTTTGAAGACTTTCGATTCCAAGCCTCCTACAT
ATGATTTATTCAATCAACCGAAAGTCCCACGCGATACTAAATTATTCTTT
CACATAATTAACGTAAGAACTCGGCATTCCGTTCTCGCTAAACGTGGGAA
GATAATTATGCGTATATAAATGTTCGTTTTTCTCTGCATAAATCATCATA
TTAACTTTGCATAATCAACGAGTGAACATCAATTTATCTTAAGAGTCCAT
CATTAAGGTTTTCGCTAGAGCACCAACAGTCAGTATTAGCTCACAAAAAA
TTGTTACGAGGTTATCATCGGCTTTTCAACTTTCTTACACGTACAGAATG
GTCACTTATTCCAATCTGATGGGTATGGAAATGTTGGCAAATGACTTGCA
AAAACCAAAACCGTCACTTTCAGTCAAAACGGAGAAGAACATGAACGAAG
CTGACGAGAAATTGGCAACATTGAATTATGTCTCTGATCTCAAAACAAAG
TAAGTAACACTAAATCTTTTGATTTGGAATTTTTTGACTTTGATAGTTTC
GGCAATGCATGAAAGCAGAGCTAATATAGTATCAATTTCAAAATATTATA
CTTCTTTAAAATAATACACGTTTTTTTCTATATAAGAACAAACTATCTAA
GAACATAAGGCTTCGCTGGCCAAAATGTTAAGAGCAAGTTAAGAACATTT
TAAGGCTCTGTGGACTCAAAAACACTCATTTCTTAAGAAAATGGTAAAAA
ATATTCACAAAATGGTCAAAATAAGAACAAGTTAAGCACATTTTTAGGCT
TAAAACTCAAAAAGTTAAGAACATCCAAAGGCTTCAAAAATTTTGGATGT
TCTTATAAAAAACGTGTACGTTATATGTGTGATATTTTAATGAAATATAG
ATTTTGAAATTCGAAAAAATCTTGATATTTTGAAGTCTAATTTCGAGCCT
ATCGGTTTAGTTTTATTTCTTATGAATCTAGAAAACGTCAAACTCTCGCT
TTTAGTACTTGAAAAAAATTCAATCTCTTAAGTTCTTTCAATACAAAACT
ACATAACCATTATCACCCCTAATATCACTAATTGAATTTTTTATCAATTT
ACAGAACGAAAAGCAAAATGTTGAAAGAATATGAACAAAAGATGGGAAAA
CCAGGTACTTAAATTTTTTAGAACATTCCAAAAGATTTCAATCAATCCCA
ACAACCTGAATAGTTTCTCTCAAAATATGTCTACTTACTATTTAAAAATT
TTACTATAGTAATTAATATATATTCTCTCCCCAAACTTTCACAGAAATGT
TAGTTCTTAAAGCTTTCAAACCCTACTGAAAGTAGTATTCAAATTCAATC
AATTTCAAAATCATTTGTCTTTATACAGCTAACAAGATTTTTGTGTTGAT
GTTAAAATTTAATATTAAACTTCGTATCATTTTCTAGGAAACAAACGACC
TTTATCCAGAATTCCATTATGGTACTTTCTTCATGAGATTCTGGATGTTG
AAAGATGCAATGATATGATTGGTTGGGAATGTGAACCAGAGCTGATTTTC
ACCATCAAAAAGCCTAAAGAGTTGGCATGCCTTTGGGGACAAATCAAGAG
CCGTGAAAACATGACATACGCTAAACTCGCCAGAGGGATTAGATATTATT
ATGGCAAAGGAGTTATTGAAAAGGTATACTATTTTTTATTCCTGCGCAAA
TGTCATTAATCGTGGTTGAACATTCAAAGTTATTGGATCAAAATTCAATG
CATCAGTTTTTCATAGAAACGTTTTCAAAGAATCATTTGTTAGTTTGGTA
TTCAAAAAATCTTGGAATATAAAGAAAATGCCTAGACCACAAATCAATGT
TAAATGGTACTTTATGGTAACATTTCTTTAATTTATTTTATAGTTTAATG
GCAAACGATTTTGTTATCAATTCATCGTCTCCAAGAAAACCAAAGCTGTT
TTATCCAAACGTAAAAATATTCCTCAAGAAATTATCAGTACGAAATCACG
ACATGATCGTAAACGAAAATCACCATTACCAGATACTTATAAAAACGATT
CTAAGAAGTCATGGGAAAATAGAAGTCAAGATGGATTTACCAACACCTCG
GTCAAAGATTGGACTAGCGATGATGATGATATCATTTCAGATTCTGATTT
AAGTAGTTTAGATCAATGTATATCTGATATTTTCACTGACCCGAAATTTG
CTACTTTCTTCCCAGATGTTTCACTTGAGAATAAAGTATTCCCAACATCA
GTATCAACCACGAAATTAGATTCAGATATGTTCATAATGACCAGACAACC
ATCAGAACTGGGAATATTTCCAACGTTAGATGATATGAGTCAATTTATTT
CTACATCAGGACCTACCGAAACTTTAACAGATTGTCTCCAACAGAAAGAA
GATCTCGTTGATTTATCCAATTTACAAGATTCCCAACTCTTTGATATTTA
TGACCAAGATAATAGCTTTGATGGTTACCAGCCAAAACAATACAGAGATC
ACCAAGAAGTTCAATGGGATCGCAAAAAATCGAAAAGTGAATCTGAAGCT
TTTTTCCAAGACTTTTTTAACCAGAACACTAGTTCTTTACAGCGTTCATC
AGCTACTGTCAGATCTTTACCAGACTTTTCAATTATTGACAACAATGTGT
CAACATTAAAACCTGAAGACCAATATGGATTTTTCACTAATATGCTGTTA
GACCAAGAAGATACACATACACAAAGCAGATCATCATCTCTTAATGATTA
TTTCAATTTTTAAAAACATTCGATGACATTTTATTAATAAAGATGGGGCT
GAAAAAGAGAAAATTTTATATAAAAAAAATTATTAACTTAGAATTTTTAA
ATTAAATTCCATGACGCAATTGTAAATAAAAATTAACCTTATTTTTGTTA
CATATGTATAGTTTTATAGAAAGAATTGTAGCGAATATATTTACTTGTGT
TTTAAACTGACACTATAGTTTGATAAAAGAAGACAAAAGTTGATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044810XLOC_044810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072151-exon-scaffold_71-1575043694:299732..299881TCONS_00072151-exon-scaffold_71-1575043694:299732..299881Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1575043694:296033..296185TCONS_00072151-exon-scaffold_71-1575043694:296033..296185Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1575043694:295378..295427TCONS_00072151-exon-scaffold_71-1575043694:295378..295427Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1575043694:294859..295094TCONS_00072151-exon-scaffold_71-1575043694:294859..295094Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1575043694:293533..294638TCONS_00072151-exon-scaffold_71-1575043694:293533..294638Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1510915933:299732..299881TCONS_00072151-exon-scaffold_71-1510915933:299732..299881Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1510915933:296033..296185TCONS_00072151-exon-scaffold_71-1510915933:296033..296185Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1510915933:295378..295427TCONS_00072151-exon-scaffold_71-1510915933:295378..295427Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1510915933:294859..295094TCONS_00072151-exon-scaffold_71-1510915933:294859..295094Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1510915933:293533..294638TCONS_00072151-exon-scaffold_71-1510915933:293533..294638Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1491911889:299732..299881TCONS_00072151-exon-scaffold_71-1491911889:299732..299881Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1491911889:296033..296185TCONS_00072151-exon-scaffold_71-1491911889:296033..296185Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1491911889:295378..295427TCONS_00072151-exon-scaffold_71-1491911889:295378..295427Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1491911889:294859..295094TCONS_00072151-exon-scaffold_71-1491911889:294859..295094Clytia hemisphaericaexon
TCONS_00072151-exon-scaffold_71-1491911889:293533..294638TCONS_00072151-exon-scaffold_71-1491911889:293533..294638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:293533..299881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.591531	0	2.06594e-08	0.397063	3.33642	1.69102	34.6761	53.8193	5.08372	2.75031	1.74397	3.71358	2.35913e-05	0	1.00682	1.71107	8.03655e-10	3.2635	0	0	0	0	0	0	0	0	0	0	4.78412e-05	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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