TCONS_00072147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072147
Unique NameTCONS_00072147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072147 ID=TCONS_00072147|Name=TCONS_00072147|organism=Clytia hemisphaerica|type=transcript|length=800bp
ATTTGTTTTCACATTCTaactgaaattttcttttctttttagtaAAATTT
ATTCGAAATATTCTTTAGAATTTAAgtgaatttaaaaagaaatggCAATC
AGAAGACTTGCTCAACAAACTTTAAGGCTAAGACCACAGGGTACAATTAC
ATGCCTATTCCATCAAGAGGCAAAAGTGGAACTTCCTAAAGAAAATTCAT
CTGAGTATACTAGTGATGGTGAAAAAATTCATTGTGGTTTAAAATTCACT
CAAGAAGGTAGCAGAACTGAAGAGGAGCTAGCTTTCATCCTTGAATCAGC
ACGTGCTAAGGCTTTTGCAGAAAGTACTACGAGATGTGTTAGTATCAAAT
CCGGTGATTAGCTGATGGATAATTTGACTGATTATGTCCACTATatattt
gtaattttcttttgaaagcaTTTAAACTCTTAATTAtggagatttttttt
taatcagaaaattttgtaaatagaatcgtttttaaagttttattgaGTTA
CTGTTTACTGATATTGGATAAGTGCTATCGTGGTACTCAGGCAAAACAGT
GACCGTTTAGTgtacttttttcaaagaatgttttaaaatttgttGAATAT
CAACTAAGATTGAGGAATTTCTATTTCTAAGGGTGAATTTTTTATTAAAC
AGCCGTTAACTCGAAAACCTAGTAAATGCCCATgttgtttgatttatttt
tcagtGTCATATGTTCACGTTACTGTTGATTTTCATTGTATAAAATTgtg
taaatattttgttttggttattaatttttaaatttgatgttGAAGTAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_71:191422..193435-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072147 ID=TCONS_00072147|Name=TCONS_00072147|organism=Clytia hemisphaerica|type=transcript|length=2014bp|location=Sequence derived from alignment at scaffold_71:191422..193435- (Clytia hemisphaerica)
ATTTGTTTTCACATTCTAACTGAAATTTTCTTTTCTTTTTAGTAAAATTT ATTCGAAATATTCTTTAGAATTTAAGTGAATTTAAAAAGAAATGGCAATC AGAAGACTTGCTCAACAAACTTTAAGGCTAAGACCACAGGGTACAATTAC ATGCCTATTCCATCAAGAGGGTAAGTTCTTTTTGCTTTTACATAGTGTGA TATTGGATATTGATATTGATTTAAGTATTTTCGAAGGTTTTTATTCTGAT GATTTTAAAATCATTTATTGCGCTAACAATACCTATAAGTATAAAAACAA TTATTTTTTGAAACGTTTACACAGATTTAATAAATCATTTAAAAAAATTA TACTCTTGGATCTTTCAAATCCCTCAGTTTTACACACAATTGAATTGTCC AAGGTCTGTTCTTCTGTAATATTTTCATTACATGATGATACAGAGATTTT AGCAGAGTTTAAATTGATGTATGGCCACTTGTTAAATTAAAAGGAATGTT ATGAAACTCAAAGATGAGGACTTTATCTAAATAAAACCTTGCTTTAGCTT TTAATCGTATTTACACACAATAGAGATTATGACATCTATTTAGCACAATA AAAGATTTGAATTAAGCTTAAAGACGTCAAAATCTACCCTAATAGCCTTA TTGTGGTCGATGTAAATAGAGACTAGACACTAGTTAGCAGTAACTATGGT AATAATCTTTAGCTGTATACATTTTTATCGTACTATCACCCTTATTTATC ACTATGATTTTAATTTAATTATAGCAAAAGTGGAACTTCCTAAAGAAAAT TCATCTGAGTATACTAGTGATGGTGAAAAAATTCATTGTGGTTTAAAATT CACTCAAGAAGGTATATTTATGCAAATTAGGTGGATTCATTTTCCATTGT TGTTTCAGTTGATTAAAAAGTTAGATTGACATGTGATGTGATTTAATGAA ATGTTGCCAATGCCATTATGACTTCCTACACGTTATAATCATGTTTTCAA AGCATGGTTATAAAATATATCAGATTATGAGGTGACTTTTTAATCACACC TTAATTAAAGTTACTTTTTAGTCACACAATAGATTACACTGTTTACGTGA ATGATAAGGGGATAAGAGATCTTATTTTGTATCTTTGGAAAAAACTTTAT CTATTAGCTATAATAACCCTAAAAGGGGGTCCCTTTTAAGGTTATAGCTT ATAGATATTCATCGAGATTTAGATGTTTTAAGAAAAAGTACCAGTTTTAC AAATGAACATAGAGAATTTTTTTCTGACATCAAAAATTCTGTAAATATTA AAAAGTTGAATAAAAAAATGAATAAAACGAAAGAAAAATAGCATGAACAT CAAATCAAAGCACTAATGATGATTTGGTCATTTCAAAGAGTTTTTTCTTG GATTTAGCCTATGTAACGTTTTTTATATTGCTCCTTTATTGATGTAAACA TACCATTATTATTTGTTGTAGGTAGCAGAACTGAAGAGGAGCTAGCTTTC ATCCTTGAATCAGCACGTGCTAAGGCTTTTGCAGAAAGTACTACGAGATG TGTTAGTATCAAATCCGGTGATTAGCTGATGGATAATTTGACTGATTATG TCCACTATATATTTGTAATTTTCTTTTGAAAGCATTTAAACTCTTAATTA TGGAGATTTTTTTTTAATCAGAAAATTTTGTAAATAGAATCGTTTTTAAA GTTTTATTGAGTTACTGTTTACTGATATTGGATAAGTGCTATCGTGGTAC TCAGGCAAAACAGTGACCGTTTAGTGTACTTTTTTCAAAGAATGTTTTAA AATTTGTTGAATATCAACTAAGATTGAGGAATTTCTATTTCTAAGGGTGA ATTTTTTATTAAACAGCCGTTAACTCGAAAACCTAGTAAATGCCCATGTT GTTTGATTTATTTTTCAGTGTCATATGTTCACGTTACTGTTGATTTTCAT TGTATAAAATTGTGTAAATATTTTGTTTTGGTTATTAATTTTTAAATTTG ATGTTGAAGTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044807XLOC_044807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072147-exon-scaffold_71-1575043694:193266..193435TCONS_00072147-exon-scaffold_71-1575043694:193266..193435Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1575043694:192575..192661TCONS_00072147-exon-scaffold_71-1575043694:192575..192661Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1575043694:191422..191964TCONS_00072147-exon-scaffold_71-1575043694:191422..191964Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1510915933:193266..193435TCONS_00072147-exon-scaffold_71-1510915933:193266..193435Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1510915933:192575..192661TCONS_00072147-exon-scaffold_71-1510915933:192575..192661Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1510915933:191422..191964TCONS_00072147-exon-scaffold_71-1510915933:191422..191964Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1491911889:193266..193435TCONS_00072147-exon-scaffold_71-1491911889:193266..193435Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1491911889:192575..192661TCONS_00072147-exon-scaffold_71-1491911889:192575..192661Clytia hemisphaericaexon
TCONS_00072147-exon-scaffold_71-1491911889:191422..191964TCONS_00072147-exon-scaffold_71-1491911889:191422..191964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:191422..193435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.34267 4.15625 9.37973 8.24564 4.85723 4.09413 10.6506 7.94785 34.8539 41.2297 29.6794 30.5045 51.8215 23.7989 18.2706 23.814 12.618 20.8776 35.6716 59.1635 51.0175 53.6759 13.697 14.0795 12.5681 15.3007 50.6225 31.1856 15.0581 23.4879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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