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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072145 ID=TCONS_00072145|Name=TCONS_00072145|organism=Clytia hemisphaerica|type=transcript|length=912bp
AATTAATCATCTTCTCTTAACACACAGAAgaagaacttgaagaaaaatga
agacaaTCATCGGACTCTGTTTGGTTGCTGttgCCGCAGCTATTACCAAC
CCACCCATCACTGGAACCACACCACCAGCTATTCCATGCCCAAACTCATT
ATGCCAAGGAAAATACGATGGTAACTTTGCCCTTAAATCACACAGAAACT
ATTTCCTCCAATGTGTCGGTGGAAACGCTTATTGTCAAGCCTGCTTCCCA
CTCTCTTTGGAATTCAGTCAAAGATGTAACCAATGTTTGTACAACCGAAA
AGACGAATGTGTCACCACACAAAAATGGGAGCCAGCCACCACCTTTGCTT
GCCCAGACAAATGCCCAGCTCGTGGACCAGATTTCACTGGCAACATTAAA
GACGACCATGAGCCACGACAATACGTTGCTTGCTGGAAGGGAGTTACTGT
TGGATGTATCGCCTGCCCAGGAAACTTGAAATTCAACGAAAAAGAAAACG
CCTGCTTGTACGAAGGCAAATACCTTACCGCTCCATactaaattaaaaga
aattcaaaacaaaaataattgtaTTAAACTGAAAACAATCTCAAAATCTT
TCCTGCTTTTTCTATCTCGTCATAGCTTTTAGACTTCTAAATCGTTTTCT
AAATCTCTCACTTTATTCTAGCTTCTCATTCTATTCTAGCTCTAAATTCA
GTCTCTTTATCTCTTCGCATCCTTGATTCTTCtattttcatcttcttctt
cacttCTTGGCCTTCCTTTGCTTCTTCTGTAAACTCTTTTCTATTCATCA
CTTTTTTATTCgaagcctaaaatatttttctgaaaaaaattatttataaa
tagattctatttatttatataaattttaacatttcaaatatttactaAAT
CTTTTGCTCGTA Run BLAST on NCBI protein sequence of TCONS_00072145-protein >TCONS_00072145-protein ID=TCONS_00072145-protein|Name=TCONS_00072145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MKTIIGLCLVAVAAAITNPPITGTTPPAIPCPNSLCQGKYDGNFALKSHR
NYFLQCVGGNAYCQACFPLSLEFSQRCNQCLYNRKDECVTTQKWEPATTF
ACPDKCPARGPDFTGNIKDDHEPRQYVACWKGVTVGCIACPGNLKFNEKE
NACLYEGKYLTAPY Run BLAST on NCBI transcript from alignment at scaffold_71:133490..134650- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072145 ID=TCONS_00072145|Name=TCONS_00072145|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at scaffold_71:133490..134650- (Clytia hemisphaerica)
AATTAATCATCTTCTCTTAACACACAGAAGAAGAACTTGAAGAAAAATGA
AGACAATCATCGGACTCTGTTTGGTTGCTGGTAAGCTTTTCATCTCTCCC
ATCTTCAAATATTTTTGGATACATTTTAATATCCGAGCAGATTCTGAATA
CTCTGTCCATGATATGTATTCACTCTGAAGGTCATTGCTCCATAAGAGCA
ACTGCTTTGGTTAGCACTCCACTTTGATCTTTTTCATCCAGATTTGAGAT
TGATATTTTTTGCAAGAAATTGATCATATCTGTCTTCTTACTATCTAACA
TAACATTTTCTTTCTTTTTTTCTTTTCAGTTGCCGCAGCTATTACCAACC
CACCCATCACTGGAACCACACCACCAGCTATTCCATGCCCAAACTCATTA
TGCCAAGGAAAATACGATGGTAACTTTGCCCTTAAATCACACAGAAACTA
TTTCCTCCAATGTGTCGGTGGAAACGCTTATTGTCAAGCCTGCTTCCCAC
TCTCTTTGGAATTCAGTCAAAGATGTAACCAATGTTTGTACAACCGAAAA
GACGAATGTGTCACCACACAAAAATGGGAGCCAGCCACCACCTTTGCTTG
CCCAGACAAATGCCCAGCTCGTGGACCAGATTTCACTGGCAACATTAAAG
ACGACCATGAGCCACGACAATACGTTGCTTGCTGGAAGGGAGTTACTGTT
GGATGTATCGCCTGCCCAGGAAACTTGAAATTCAACGAAAAAGAAAACGC
CTGCTTGTACGAAGGCAAATACCTTACCGCTCCATACTAAATTAAAAGAA
ATTCAAAACAAAAATAATTGTATTAAACTGAAAACAATCTCAAAATCTTT
CCTGCTTTTTCTATCTCGTCATAGCTTTTAGACTTCTAAATCGTTTTCTA
AATCTCTCACTTTATTCTAGCTTCTCATTCTATTCTAGCTCTAAATTCAG
TCTCTTTATCTCTTCGCATCCTTGATTCTTCTATTTTCATCTTCTTCTTC
ACTTCTTGGCCTTCCTTTGCTTCTTCTGTAAACTCTTTTCTATTCATCAC
TTTTTTATTCGAAGCCTAAAATATTTTTCTGAAAAAAATTATTTATAAAT
AGATTCTATTTATTTATATAAATTTTAACATTTCAAATATTTACTAAATC
TTTTGCTCGTA Coding sequence (CDS) from alignment at scaffold_71:133490..134650- >TCONS_00072145 ID=TCONS_00072145|Name=TCONS_00072145|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_71:133490..134650- (Clytia hemisphaerica)
TTGCCGCAGCTATTACCAACCCACCCATCACTGGAACCACACCACCAGCT
ATTCCATGCCCAAACTCATTATGCCAAGGAAAATACGATGGTAACTTTGC
CCTTAAATCACACAGAAACTATTTCCTCCAATGTGTCGGTGGAAACGCTT
ATTGTCAAGCCTGCTTCCCACTCTCTTTGGAATTCAGTCAAAGATGTAAC
CAATGTTTGTACAACCGAAAAGACGAATGTGTCACCACACAAAAATGGGA
GCCAGCCACCACCTTTGCTTGCCCAGACAAATGCCCAGCTCGTGGACCAG
ATTTCACTGGCAACATTAAAGACGACCATGAGCCACGACAATACGTTGCT
TGCTGGAAGGGAGTTACTGTTGGATGTATCGCCTGCCCAGGAAACTTGAA
ATTCAACGAAAAAGAAAACGCCTGCTTGTACGAAGGCAAATACCTTACCG
CTCCATACTAAATGAAGACAATCATCGGACTCTGTTTGGTTGCTGTTGCC
GCAGCTATTACCAACCCACCCATCACTGGAACCACACCACCAGCTATTCC
ATGCCCAAACTCATTATGCCAAGGAAAATACGATGGTAACTTTGCCCTTA
AATCACACAGAAACTATTTCCTCCAATGTGTCGGTGGAAACGCTTATTGT
CAAGCCTGCTTCCCACTCTCTTTGGAATTCAGTCAAAGATGTAACCAATG
TTTGTACAACCGAAAAGACGAATGTGTCACCACACAAAAATGGGAGCCAG
CCACCACCTTTGCTTGCCCAGACAAATGCCCAGCTCGTGGACCAGATTTC
ACTGGCAACATTAAAGACGACCATGAGCCACGACAATACGTTGCTTGCTG
GAAGGGAGTTACTGTTGGATGTATCGCCTGCCCAGGAAACTTGAAATTCA
ACGAAAAAGAAAACGCCTGCTTGTACGAAGGCAAATACCTTACCGCTCCA
TACTAAATGAAGACAATCATCGGACTCTGTTTGGTTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072145-exon-scaffold_71-1575043694:134571..134650 | TCONS_00072145-exon-scaffold_71-1575043694:134571..134650 | Clytia hemisphaerica | exon |
| TCONS_00072145-exon-scaffold_71-1575043694:133490..134321 | TCONS_00072145-exon-scaffold_71-1575043694:133490..134321 | Clytia hemisphaerica | exon |
| TCONS_00072145-exon-scaffold_71-1510915933:134571..134650 | TCONS_00072145-exon-scaffold_71-1510915933:134571..134650 | Clytia hemisphaerica | exon |
| TCONS_00072145-exon-scaffold_71-1510915933:133490..134321 | TCONS_00072145-exon-scaffold_71-1510915933:133490..134321 | Clytia hemisphaerica | exon |
| TCONS_00072145-exon-scaffold_71-1491911889:134571..134650 | TCONS_00072145-exon-scaffold_71-1491911889:134571..134650 | Clytia hemisphaerica | exon |
| TCONS_00072145-exon-scaffold_71-1491911889:133490..134321 | TCONS_00072145-exon-scaffold_71-1491911889:133490..134321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:133490..134650 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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