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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072141 ID=TCONS_00072141|Name=TCONS_00072141|organism=Clytia hemisphaerica|type=transcript|length=1288bp
ACCtgacaaagttaaaaaaaagtcaaCTCGCAAACGACAAATAAGATAAT
GGTATTTCTCGTTCCATATCATCTTCATCATTATCAAAAGGTAATTAtcc
aaaaacaaaattaaatctGTGTGTATCaataatatttacaaaaaaataaa
ttaaattcatttATTGAGCGCGAGAAAATCGAATGACGAAAATAGACAAA
ATActtaataatttttcacaataaACTCTCTGATTATTGAACGTCTACCA
AAAGTCgcattagcgaggttaagcaagaagctatctattacgtacggaat
ctattacgtgagtttttcGCGGGCTAGAGCCCGAATCTCAAGGCTAACTC
TGTCCCGTGAAATNTGTACGTCATAGCTTGGGGAGTGGATCTATTGCGCG
AAATTCTCCAATCTCACGTAATAGATATCGATTAGGATATAAGCATGATC
CACGGGAATTTTACCTTACGGAGATTGGGCTGAACCGTTTAGGATCAAAA
ATCAcccgaaaaaaatgtaaacagaaaagaaactttggtaaatttttttt
gatttctgacaAGTTTGAGCTGAGAAAACTAACAgtagaaatttttagaa
tctcATCTGTGGAAACTATGATGCATACAAACAAAGTGAAATGATTTATT
GCACAAAAGAAGGTCAAGATtgtttcttTGGTGCCACCATCATGTGCGAC
GAAGCCAAAGTTATAATGTCACCCACCCAACGCAACAAATACGAAAAAGA
CTGCTCTGCCAAGCTCAAATAAATTTACCCTTCCACCCAAAGCATAACAg
aagaaatctttatttattgCTCCAATTTCAACTGCTACAACTAAGCAACG
AGATTCAATTTCTGCTCTCCATCATCAACTATATATTGTACGTACAAATC
AGCCTGAGTAAGAACCTGATGTCACACAACAACCGCTGAACTTCAAACCG
TTCTCGACAATTATATAAAACTCTATCTTCTGGACAACCGCTGCTGCTTT
AAGTTCTCAATCCTTTACTGAAAAATGTTTATTGACTGGTCATCCTTCAA
CTTCTTCGACATTATAATGTTATACGTTCCAGAAAGTTTGGTTGATTCTA
AAGAGACATCTCCCTTCCTAAAAAGGTGATCTTGATACCTTGGAATGTAA
AGAAGCAGAAGAAGGAACACCTGCCAGATATGAAACTTGAGACCTGGTTT
GCACACTTTTTTATTGGTAATGCTAATGGTGAAGCATTCATATAGAAATG
CAGCTAAATAAGAATGACAGACTGTTGACTGTATACAC Run BLAST on NCBI transcript from alignment at scaffold_71:1139474..1140951+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072141 ID=TCONS_00072141|Name=TCONS_00072141|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at scaffold_71:1139474..1140951+ (Clytia hemisphaerica)
ACCtgacaaagttaaaaaaaagtcaaCTCGCAAACGACAAATAAGATAAT
GGTATTTCTCGTTCCATATCATCTTCATCATTATCAAAAGGTAATTAtcc
aaaaacaaaattaaatctGTGTGTATCaataatatttacaaaaaaataaa
ttaaattcatttATTGAGCGCGAGAAAATCGAATGACGAAAATAGACAAA
ATActtaataatttttcacaataaACTCTCTGATTATTGAACGTCTACCA
AAAGTCgcattagcgaggttaagcaagaagctatctattacgtacggaat
ctattacgtgagtttttcGCGGGCTAGAGCCCGAATCTCAAGGCTAACTC
TGTCCCGTGAAATNTGTACGTCATAGCTTGGGGAGTGGATCTATTGCGCG
AAATTCTCCAATCTCACGTAATAGATATCGATTAGGATATAAGCATGATC
CACGGGAATTTTACCTTACGGAGATTGGGCTGAACCGTTTAGGATCAAAA
ATCAcccgaaaaaaatgtaaacagaaaagaaactttggtaaatttttttt
gatttctgacaAGTTTGAGCTGAGAAAACTAACAgtagaaatttttagaa
tctcATCTGTGGAAACTATGATGCATACAAACAAAGTGAAATGATTTATT
GCACAAAAGAAGGTCAAGATGTAAGGGTAATAAAATAATCTTTGCtgact
tttttatcaaaccaaaacaaactgaAGTTTCTTTatggttcttttgtttt
tcttctcttttttatcttgctttttatATATGCTCTCAAAGTCCAAATAC
ATTCAAAGTAACCATTACAATGAACAGCATgtaaccatatttctttttca
tgtttttcagtgtttcttTGGTGCCACCATCATGTGCGACGAAGCCAAAG
TTATAATGTCACCCACCCAACGCAACAAATACGAAAAAGACTGCTCTGCC
AAGCTCAAATAAATTTACCCTTCCACCCAAAGCATAACAgaagaaatctt
tatttattgCTCCAATTTCAACTGCTACAACTAAGCAACGAGATTCAATT
TCTGCTCTCCATCATCAACTATATATTGTACGTACAAATCAGCCTGAGTA
AGAACCTGATGTCACACAACAACCGCTGAACTTCAAACCGTTCTCGACAA
TTATATAAAACTCTATCTTCTGGACAACCGCTGCTGCTTTAAGTTCTCAA
TCCTTTACTGAAAAATGTTTATTGACTGGTCATCCTTCAACTTCTTCGAC
ATTATAATGTTATACGTTCCAGAAAGTTTGGTTGATTCTAAAGAGACATC
TCCCTTCCTAAAAAGGTGATCTTGATACCTTGGAATGTAAAGAAGCAGAA
GAAGGAACACCTGCCAGATATGAAACTTGAGACCTGGTTTGCACACTTTT
TTATTGGTAATGCTAATGGTGAAGCATTCATATAGAAATGCAGCTAAATA
AGAATGACAGACTGTTGACTGTATACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072141-exon-scaffold_71-1491911889:1139474..1140143 | TCONS_00072141-exon-scaffold_71-1491911889:1139474..1140143 | Clytia hemisphaerica | exon |
| TCONS_00072141-exon-scaffold_71-1510915933:1139474..1140143 | TCONS_00072141-exon-scaffold_71-1510915933:1139474..1140143 | Clytia hemisphaerica | exon |
| TCONS_00072141-exon-scaffold_71-1575043694:1139474..1140143 | TCONS_00072141-exon-scaffold_71-1575043694:1139474..1140143 | Clytia hemisphaerica | exon |
| TCONS_00072141-exon-scaffold_71-1491911889:1140334..1140951 | TCONS_00072141-exon-scaffold_71-1491911889:1140334..1140951 | Clytia hemisphaerica | exon |
| TCONS_00072141-exon-scaffold_71-1510915933:1140334..1140951 | TCONS_00072141-exon-scaffold_71-1510915933:1140334..1140951 | Clytia hemisphaerica | exon |
| TCONS_00072141-exon-scaffold_71-1575043694:1140334..1140951 | TCONS_00072141-exon-scaffold_71-1575043694:1140334..1140951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1139474..1140951 + |
Blast
The following BLAST results are available for this feature:
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