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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072137 ID=TCONS_00072137|Name=TCONS_00072137|organism=Clytia hemisphaerica|type=transcript|length=829bp
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata
ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGtatGCAG
TGGATTATCAGCACCTGATGTCACTGGAACCACACCACCAGCTGTCCCAT
GTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTC
AACCCAACCAACTATAAACTCGTCAAGAACTATTTCGTCCAATGTCTCGG
AGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCC
CACGATGCAACCAATGTTTGTACGGTTCAAATGATGAATGTGTCACCACT
CTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAGACAAATGTCCCCA
CCGTGGACCTAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGAC
AATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATGTGTTGCTTGTCCA
GGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTTGAAGGAAA
ATACATCACTGAACCAACAAAGAACTAAGCCtcatatttttaaataattt
agataaatatttttatgaaaaccGAAATTATTTCTTCATTCGTACGGCTT
TTTTGTATTCTCTAGGCCGTACCAAAGTTTTTCAATTCTCTAATTGATCT
TTCTATGATTTTATATTCAATCTTCAATTTCTCATTTtcagttttctttt
ttccatACTTTGTCTTGCTATATTTGACTTTCAACGTGCTTTTAAATTTG
TCACTTTCTACAGCTGTTTTCTACATTGG Run BLAST on NCBI protein sequence of TCONS_00072137-protein >TCONS_00072137-protein ID=TCONS_00072137-protein|Name=TCONS_00072137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
TNQEESIAKVCSKHNIIKMKSLIFLAGIVAVCSGLSAPDVTGTTPPAVPC
PNTLCKGKADGNFAYVNPTNYKLVKNYFVQCLGGNAYCQACWPLSLEFSP
RCNQCLYGSNDECVTTLPFQPATTFQCPDKCPHRGPKFTGNIADPAEKRQ
YVACWEGVTVGCVACPGNLEFNESENACLFEGKYITEPTKN Run BLAST on NCBI transcript from alignment at scaffold_71:932589..938030+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072137 ID=TCONS_00072137|Name=TCONS_00072137|organism=Clytia hemisphaerica|type=transcript|length=5442bp|location=Sequence derived from alignment at scaffold_71:932589..938030+ (Clytia hemisphaerica)
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata
ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGGTATGTT
TCGCCTACATTTCGGATAAATATTTTAAGcaagtttgaattttttctagT
CATAGTGCTGCCAACTAACTTTCTTTTTATAGCTTTCTACTCAACCCATA
TTGAGGGTTTAGACATATGAAGTTTACTCTTCCTTAACTTTCACCATTTT
ATGTCGTGAAAAAGTCTGATCCACCtcttataaaaatagaaattgaacAA
AACTAACATACCCTGGTCCTCAAAGTTGTTGAAATGACTAAAACTGTCAA
TGtgtgtaaaaaaattgttttttttttcaattttagtatGCAGTGGATTA
TCAGCACCTGATGTCACTGGGACCACACCACCAGCTGTCCCATGTCCAAA
CACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTCAACCCAA
CCAACTACAAACTCGTGAAGAACTANNNNNNNNNNNNNNNNNNNNNNNNN
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ccccccccccccagtggtAACTCtaatcacgatatcacgcaatttttgcc
TTCAATTACGATCAagcaaataagcaaaaaaaaaatggacAATCACGCAT
Ccatttgaaaaagtccaaatcacgtatcatggctccaaaatctttcaaat
cacgatcaccttttgacctctcatcacgCGATCACGCTTCAAAAAAGTCC
CTATAAAGTCATCACGAAAACTGTTTTTGGGGCCTCATTAAACATTCTGA
TGTTATTGTTCTTATGGTCAATTTTCTATAGTTTCagattttcaaagatt
tgtGAAACAAGGACTCGCAATGAGGAAGTACcctgcccagctggcacaca
acgttgtttcaacattcatctaacgttatatggacgttgtgaacgttaaa
taaacgttgaaacaacgttgtgtgccagctgggtggcCTGGATTGTTTGT
CAAAAGATAAGAAGAATTCCTTTGTTTAGGGTGTCATCGTGTTATGCAAC
TGATTGAAATATTTTCCGGTattcattttcgcgaaaaaggaaATGATACA
AAGGGAAAATGAAGAATTAATTTGTATTTGATTACATTAGAAAACCCAAT
TAAAATGACAGCCCGGTATCAATATTTTGAAGTGTTTCAAAATAACAAGG
AAGTAAGGTACGTATAAATAGACCTagactttttcaaaataatcattCAA
CAACTTGAAACAAACTAATCAAGAAGAATCAATACCAAAGTTTGCTCAAA
acataatataataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTG
CAGGTATGTTTCCCCTAGATTTCGGATTAATATTTTAAgcaagtttgaat
ttttttctagtCACCCAGCTGGCatacaatgttgtttcaacgttcattta
acgttatatgacgttgtgaacgttagataaacgttgaaacaacgttgtgt
gccagctgggcagtGCTGcaaactaattttctttttatagattTCTACTC
AACCCATATTGAGGGTGTAGACATATGAaccataaaacaaaagaaagtcc
gAAAAGATTCATTCTGAcatcaaaaatcttgaagtaACAGACGAAGTGAT
CTCATGTAAAAATGCATTTTTACATGAGATCACTTCGTCTGCtacttcaa
gatttttgatgTCAGAATGAATCTTTTcggactttcttttgttttatggt
TTTTAAAATTATCGGCTGGTTATGGATTGTAGACATATGAAGTTTACTCT
TCCTTAACTTTCACCATTTTATGTTTGTGAAAAAATCTGATCCACCTCTT
ATAAAAAGAGAAATTGAACAAAACTAACATACCCTGGTCCTCAAAGTTGT
TGAAATGACTAAAACTGTCAATGTGTgtaacaaaaattgttttttttcaa
ttttagtatGCAGTGGATTATCAGCACCTGATGTCACTGGAACCACACCA
CCAGCTGTCCCATGTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAA
CTTTGCTTATGTCAACCCAACCAACTATAAACTCGTCAAGAACTATTTCG
TCCAATGTCTCGGAGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGT
TTGGAATTCAGCCCACGATGCAACCAATGTTTGTACGGTTCAAATGATGA
ATGTGTCACCACTCTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAG
ACAAATGTCCCCACCGTGGACCTAAATTCACCGGAAACATTGCTGACCCA
GCTGAAAAACGACAATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATG
TGTTGCTTGTCCAGGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCT
TGTTTGAAGGAAAATACATCACTGAACCAACAAAGAACTAAGCCtcatat
ttttaaataatttagataaatatttttatgaaaaccGAAATTATTTCTTC
ATTCGTACGGCTTTTTTGTATTCTCTAGGCCGTACCAAAGTTTTTCAATT
CTCTAATTGATCTTTCTATGATTTTATATTCAATCTTCAATTTCTCATTT
tcagttttcttttttccatACTTTGTCTTGCTATATTTGACTTTCAACGT
GCTTTTAAATTTGTCACTTTCTACAGCTGTTTTCTACATTGG Coding sequence (CDS) from alignment at scaffold_71:932589..938030+ >TCONS_00072137 ID=TCONS_00072137|Name=TCONS_00072137|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_71:932589..938030+ (Clytia hemisphaerica)
ACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatataat
aaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGtatGCAGTG
GATTATCAGCACCTGATGTCACTGGAACCACACCACCAGCTGTCCCATGT
CCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTCAA
CCCAACCAACTATAAACTCGTCAAGAACTATTTCGTCCAATGTCTCGGAG
GAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCCCA
CGATGCAACCAATGTTTGTACGGTTCAAATGATGAATGTGTCACCACTCT
TCCATTCCAACCAGCCACCACTTTCCAATGCCCAGACAAATGTCCCCACC
GTGGACCTAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGACAA
TACGTTGCATGCTGGGAAGGAGTCACTGTTGGATGTGTTGCTTGTCCAGG
AAATTTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTTGAAGGAAAAT
ACATCACTGAACCAACAAAGAACTAAACAAATCAAGAAGAATCAATAGCT
AAAGTTTGCTCAAAacataatataataaaaatgaagTCACTCATTTTCTT
AGCAGGGATTGTTGCAGtatGCAGTGGATTATCAGCACCTGATGTCACTG
GAACCACACCACCAGCTGTCCCATGTCCAAACACTTTATGTAAAGGAAAA
GCTGATGGAAACTTTGCTTATGTCAACCCAACCAACTATAAACTCGTCAA
GAACTATTTCGTCCAATGTCTCGGAGGAAATGCTTATTGTCAAGCATGCT
GGCCACTCAGTTTGGAATTCAGCCCACGATGCAACCAATGTTTGTACGGT
TCAAATGATGAATGTGTCACCACTCTTCCATTCCAACCAGCCACCACTTT
CCAATGCCCAGACAAATGTCCCCACCGTGGACCTAAATTCACCGGAAACA
TTGCTGACCCAGCTGAAAAACGACAATACGTTGCATGCTGGGAAGGAGTC
ACTGTTGGATGTGTTGCTTGTCCAGGAAATTTGGAATTCAACGAAAGCGA
AAATGCTTGCTTGTTTGAAGGAAAATACATCACTGAACCAACAAAGAACT
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata
ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGtatGCAG
TGGATTATCAGCACCTGATGTCACTGGAACCACACCACCAGCTGTCCCAT
GTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTC
AACCCAACCAACTATAAACTCGTCAAGAACTATTTCGTCCAATGTCTCGG
AGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCC
CACGATGCAACCAATGTTTGTACGGTTCAAATGATGAATGTGTCACCACT
CTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAGACAAATGTCCCCA
CCGTGGACCTAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGAC
AATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATGTGTTGCTTGTCCA
GGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTTGAAGGAAA
ATACATCACTGAACCAACAAAGAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072137-exon-scaffold_71-1491911889:932589..932630 | TCONS_00072137-exon-scaffold_71-1491911889:932589..932630 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1510915933:932589..932630 | TCONS_00072137-exon-scaffold_71-1510915933:932589..932630 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1575043694:932589..932630 | TCONS_00072137-exon-scaffold_71-1575043694:932589..932630 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1491911889:936641..936691 | TCONS_00072137-exon-scaffold_71-1491911889:936641..936691 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1510915933:936641..936691 | TCONS_00072137-exon-scaffold_71-1510915933:936641..936691 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1575043694:936641..936691 | TCONS_00072137-exon-scaffold_71-1575043694:936641..936691 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1491911889:937295..938030 | TCONS_00072137-exon-scaffold_71-1491911889:937295..938030 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1510915933:937295..938030 | TCONS_00072137-exon-scaffold_71-1510915933:937295..938030 | Clytia hemisphaerica | exon |
| TCONS_00072137-exon-scaffold_71-1575043694:937295..938030 | TCONS_00072137-exon-scaffold_71-1575043694:937295..938030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:932589..938030 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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