TCONS_00072137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072137
Unique NameTCONS_00072137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072137 ID=TCONS_00072137|Name=TCONS_00072137|organism=Clytia hemisphaerica|type=transcript|length=829bp
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata
ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGtatGCAG
TGGATTATCAGCACCTGATGTCACTGGAACCACACCACCAGCTGTCCCAT
GTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTC
AACCCAACCAACTATAAACTCGTCAAGAACTATTTCGTCCAATGTCTCGG
AGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCC
CACGATGCAACCAATGTTTGTACGGTTCAAATGATGAATGTGTCACCACT
CTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAGACAAATGTCCCCA
CCGTGGACCTAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGAC
AATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATGTGTTGCTTGTCCA
GGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTTGAAGGAAA
ATACATCACTGAACCAACAAAGAACTAAGCCtcatatttttaaataattt
agataaatatttttatgaaaaccGAAATTATTTCTTCATTCGTACGGCTT
TTTTGTATTCTCTAGGCCGTACCAAAGTTTTTCAATTCTCTAATTGATCT
TTCTATGATTTTATATTCAATCTTCAATTTCTCATTTtcagttttctttt
ttccatACTTTGTCTTGCTATATTTGACTTTCAACGTGCTTTTAAATTTG
TCACTTTCTACAGCTGTTTTCTACATTGG
Run BLAST on NCBI

protein sequence of TCONS_00072137-protein

>TCONS_00072137-protein ID=TCONS_00072137-protein|Name=TCONS_00072137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
TNQEESIAKVCSKHNIIKMKSLIFLAGIVAVCSGLSAPDVTGTTPPAVPC
PNTLCKGKADGNFAYVNPTNYKLVKNYFVQCLGGNAYCQACWPLSLEFSP
RCNQCLYGSNDECVTTLPFQPATTFQCPDKCPHRGPKFTGNIADPAEKRQ
YVACWEGVTVGCVACPGNLEFNESENACLFEGKYITEPTKN
Run BLAST on NCBI

transcript from alignment at scaffold_71:932589..938030+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072137 ID=TCONS_00072137|Name=TCONS_00072137|organism=Clytia hemisphaerica|type=transcript|length=5442bp|location=Sequence derived from alignment at scaffold_71:932589..938030+ (Clytia hemisphaerica)
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGGTATGTT TCGCCTACATTTCGGATAAATATTTTAAGcaagtttgaattttttctagT CATAGTGCTGCCAACTAACTTTCTTTTTATAGCTTTCTACTCAACCCATA TTGAGGGTTTAGACATATGAAGTTTACTCTTCCTTAACTTTCACCATTTT ATGTCGTGAAAAAGTCTGATCCACCtcttataaaaatagaaattgaacAA AACTAACATACCCTGGTCCTCAAAGTTGTTGAAATGACTAAAACTGTCAA TGtgtgtaaaaaaattgttttttttttcaattttagtatGCAGTGGATTA TCAGCACCTGATGTCACTGGGACCACACCACCAGCTGTCCCATGTCCAAA CACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTCAACCCAA CCAACTACAAACTCGTGAAGAACTANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc ccccccccccccagtggtAACTCtaatcacgatatcacgcaatttttgcc TTCAATTACGATCAagcaaataagcaaaaaaaaaatggacAATCACGCAT Ccatttgaaaaagtccaaatcacgtatcatggctccaaaatctttcaaat cacgatcaccttttgacctctcatcacgCGATCACGCTTCAAAAAAGTCC CTATAAAGTCATCACGAAAACTGTTTTTGGGGCCTCATTAAACATTCTGA TGTTATTGTTCTTATGGTCAATTTTCTATAGTTTCagattttcaaagatt tgtGAAACAAGGACTCGCAATGAGGAAGTACcctgcccagctggcacaca acgttgtttcaacattcatctaacgttatatggacgttgtgaacgttaaa taaacgttgaaacaacgttgtgtgccagctgggtggcCTGGATTGTTTGT CAAAAGATAAGAAGAATTCCTTTGTTTAGGGTGTCATCGTGTTATGCAAC TGATTGAAATATTTTCCGGTattcattttcgcgaaaaaggaaATGATACA AAGGGAAAATGAAGAATTAATTTGTATTTGATTACATTAGAAAACCCAAT TAAAATGACAGCCCGGTATCAATATTTTGAAGTGTTTCAAAATAACAAGG AAGTAAGGTACGTATAAATAGACCTagactttttcaaaataatcattCAA CAACTTGAAACAAACTAATCAAGAAGAATCAATACCAAAGTTTGCTCAAA acataatataataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTG CAGGTATGTTTCCCCTAGATTTCGGATTAATATTTTAAgcaagtttgaat ttttttctagtCACCCAGCTGGCatacaatgttgtttcaacgttcattta acgttatatgacgttgtgaacgttagataaacgttgaaacaacgttgtgt gccagctgggcagtGCTGcaaactaattttctttttatagattTCTACTC AACCCATATTGAGGGTGTAGACATATGAaccataaaacaaaagaaagtcc gAAAAGATTCATTCTGAcatcaaaaatcttgaagtaACAGACGAAGTGAT CTCATGTAAAAATGCATTTTTACATGAGATCACTTCGTCTGCtacttcaa gatttttgatgTCAGAATGAATCTTTTcggactttcttttgttttatggt TTTTAAAATTATCGGCTGGTTATGGATTGTAGACATATGAAGTTTACTCT TCCTTAACTTTCACCATTTTATGTTTGTGAAAAAATCTGATCCACCTCTT ATAAAAAGAGAAATTGAACAAAACTAACATACCCTGGTCCTCAAAGTTGT TGAAATGACTAAAACTGTCAATGTGTgtaacaaaaattgttttttttcaa ttttagtatGCAGTGGATTATCAGCACCTGATGTCACTGGAACCACACCA CCAGCTGTCCCATGTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAA CTTTGCTTATGTCAACCCAACCAACTATAAACTCGTCAAGAACTATTTCG TCCAATGTCTCGGAGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGT TTGGAATTCAGCCCACGATGCAACCAATGTTTGTACGGTTCAAATGATGA ATGTGTCACCACTCTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAG ACAAATGTCCCCACCGTGGACCTAAATTCACCGGAAACATTGCTGACCCA GCTGAAAAACGACAATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATG TGTTGCTTGTCCAGGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCT TGTTTGAAGGAAAATACATCACTGAACCAACAAAGAACTAAGCCtcatat ttttaaataatttagataaatatttttatgaaaaccGAAATTATTTCTTC ATTCGTACGGCTTTTTTGTATTCTCTAGGCCGTACCAAAGTTTTTCAATT CTCTAATTGATCTTTCTATGATTTTATATTCAATCTTCAATTTCTCATTT tcagttttcttttttccatACTTTGTCTTGCTATATTTGACTTTCAACGT GCTTTTAAATTTGTCACTTTCTACAGCTGTTTTCTACATTGG

Coding sequence (CDS) from alignment at scaffold_71:932589..938030+

>TCONS_00072137 ID=TCONS_00072137|Name=TCONS_00072137|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_71:932589..938030+ (Clytia hemisphaerica)
ACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatataat
aaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGtatGCAGTG
GATTATCAGCACCTGATGTCACTGGAACCACACCACCAGCTGTCCCATGT
CCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTCAA
CCCAACCAACTATAAACTCGTCAAGAACTATTTCGTCCAATGTCTCGGAG
GAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCCCA
CGATGCAACCAATGTTTGTACGGTTCAAATGATGAATGTGTCACCACTCT
TCCATTCCAACCAGCCACCACTTTCCAATGCCCAGACAAATGTCCCCACC
GTGGACCTAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGACAA
TACGTTGCATGCTGGGAAGGAGTCACTGTTGGATGTGTTGCTTGTCCAGG
AAATTTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTTGAAGGAAAAT
ACATCACTGAACCAACAAAGAACTAAACAAATCAAGAAGAATCAATAGCT
AAAGTTTGCTCAAAacataatataataaaaatgaagTCACTCATTTTCTT
AGCAGGGATTGTTGCAGtatGCAGTGGATTATCAGCACCTGATGTCACTG
GAACCACACCACCAGCTGTCCCATGTCCAAACACTTTATGTAAAGGAAAA
GCTGATGGAAACTTTGCTTATGTCAACCCAACCAACTATAAACTCGTCAA
GAACTATTTCGTCCAATGTCTCGGAGGAAATGCTTATTGTCAAGCATGCT
GGCCACTCAGTTTGGAATTCAGCCCACGATGCAACCAATGTTTGTACGGT
TCAAATGATGAATGTGTCACCACTCTTCCATTCCAACCAGCCACCACTTT
CCAATGCCCAGACAAATGTCCCCACCGTGGACCTAAATTCACCGGAAACA
TTGCTGACCCAGCTGAAAAACGACAATACGTTGCATGCTGGGAAGGAGTC
ACTGTTGGATGTGTTGCTTGTCCAGGAAATTTGGAATTCAACGAAAGCGA
AAATGCTTGCTTGTTTGAAGGAAAATACATCACTGAACCAACAAAGAACT
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata
ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGtatGCAG
TGGATTATCAGCACCTGATGTCACTGGAACCACACCACCAGCTGTCCCAT
GTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTC
AACCCAACCAACTATAAACTCGTCAAGAACTATTTCGTCCAATGTCTCGG
AGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCC
CACGATGCAACCAATGTTTGTACGGTTCAAATGATGAATGTGTCACCACT
CTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAGACAAATGTCCCCA
CCGTGGACCTAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGAC
AATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATGTGTTGCTTGTCCA
GGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTTGAAGGAAA
ATACATCACTGAACCAACAAAGAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044798XLOC_044798Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072137-proteinTCONS_00072137-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072137-exon-scaffold_71-1491911889:932589..932630TCONS_00072137-exon-scaffold_71-1491911889:932589..932630Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1510915933:932589..932630TCONS_00072137-exon-scaffold_71-1510915933:932589..932630Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1575043694:932589..932630TCONS_00072137-exon-scaffold_71-1575043694:932589..932630Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1491911889:936641..936691TCONS_00072137-exon-scaffold_71-1491911889:936641..936691Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1510915933:936641..936691TCONS_00072137-exon-scaffold_71-1510915933:936641..936691Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1575043694:936641..936691TCONS_00072137-exon-scaffold_71-1575043694:936641..936691Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1491911889:937295..938030TCONS_00072137-exon-scaffold_71-1491911889:937295..938030Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1510915933:937295..938030TCONS_00072137-exon-scaffold_71-1510915933:937295..938030Clytia hemisphaericaexon
TCONS_00072137-exon-scaffold_71-1575043694:937295..938030TCONS_00072137-exon-scaffold_71-1575043694:937295..938030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:932589..938030 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0925973 0 0 0 0 0 0 0.000686453 0.096809 0.0859586 176.005 23.6202 0 0 0 0.111032 0 0 0 0 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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