TCONS_00072136 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072136
Unique Name	TCONS_00072136
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	829

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_71:932589..938030+

transcript sequence

>TCONS_00072136 ID=TCONS_00072136|Name=TCONS_00072136|organism=Clytia hemisphaerica|type=transcript|length=829bp
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata
ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGtatGCAG
TGGATTATCAGCACCTGATGTCACTGGAACCACACCACCAGCTGTCCCAT
GTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTC
AACCCAACCAACTATAAACTCGTCAAGAACTATTTCGTCCAATGTCTCGG
AGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGTTTGGAATTCAGCC
CACGATGCAACCAATGTTTGTACGGTTCAAATGATGAATGTGTCACCACT
CTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAGACAAATGTCCCCA
CCGTGGACCTAAATTCACCGGAAACATTGCTGACCCAGCTGAAAAACGAC
AATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATGTGTTGCTTGTCCA
GGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCTTGTTTGAAGGAAA
ATACATCACTGAACCAACAAAGAACTAAGCCtcatatttttaaataattt
agataaatatttttatgaaaaccGAAATTATTTCTTCATTCGTACGGCTT
TTTTGTATTCTCTAGGCCGTACCAAAGTTTTTCAATTCTCTAATTGATCT
TTCTATGATTTTATATTCAATCTTCAATTTCTCATTTtcagttttctttt
ttccatACTTTGTCTTGCTATATTTGACTTTCAACGTGCTTTTAAATTTG
TCACTTTCTACAGCTGTTTTCTACATTGG

Run BLAST on NCBI

transcript from alignment at scaffold_71:932589..938030+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072136 ID=TCONS_00072136|Name=TCONS_00072136|organism=Clytia hemisphaerica|type=transcript|length=5442bp|location=Sequence derived from alignment at scaffold_71:932589..938030+ (Clytia hemisphaerica)
AAACAAATCAAGAAGAATCAATAGCTAAAGTTTGCTCAAAacataatata
ataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTGCAGGTATGTT
TCGCCTACATTTCGGATAAATATTTTAAGcaagtttgaattttttctagT
CATAGTGCTGCCAACTAACTTTCTTTTTATAGCTTTCTACTCAACCCATA
TTGAGGGTTTAGACATATGAAGTTTACTCTTCCTTAACTTTCACCATTTT
ATGTCGTGAAAAAGTCTGATCCACCtcttataaaaatagaaattgaacAA
AACTAACATACCCTGGTCCTCAAAGTTGTTGAAATGACTAAAACTGTCAA
TGtgtgtaaaaaaattgttttttttttcaattttagtatGCAGTGGATTA
TCAGCACCTGATGTCACTGGGACCACACCACCAGCTGTCCCATGTCCAAA
CACTTTATGTAAAGGAAAAGCTGATGGAAACTTTGCTTATGTCAACCCAA
CCAACTACAAACTCGTGAAGAACTANNNNNNNNNNNNNNNNNNNNNNNNN
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ccccccccccccagtggtAACTCtaatcacgatatcacgcaatttttgcc
TTCAATTACGATCAagcaaataagcaaaaaaaaaatggacAATCACGCAT
Ccatttgaaaaagtccaaatcacgtatcatggctccaaaatctttcaaat
cacgatcaccttttgacctctcatcacgCGATCACGCTTCAAAAAAGTCC
CTATAAAGTCATCACGAAAACTGTTTTTGGGGCCTCATTAAACATTCTGA
TGTTATTGTTCTTATGGTCAATTTTCTATAGTTTCagattttcaaagatt
tgtGAAACAAGGACTCGCAATGAGGAAGTACcctgcccagctggcacaca
acgttgtttcaacattcatctaacgttatatggacgttgtgaacgttaaa
taaacgttgaaacaacgttgtgtgccagctgggtggcCTGGATTGTTTGT
CAAAAGATAAGAAGAATTCCTTTGTTTAGGGTGTCATCGTGTTATGCAAC
TGATTGAAATATTTTCCGGTattcattttcgcgaaaaaggaaATGATACA
AAGGGAAAATGAAGAATTAATTTGTATTTGATTACATTAGAAAACCCAAT
TAAAATGACAGCCCGGTATCAATATTTTGAAGTGTTTCAAAATAACAAGG
AAGTAAGGTACGTATAAATAGACCTagactttttcaaaataatcattCAA
CAACTTGAAACAAACTAATCAAGAAGAATCAATACCAAAGTTTGCTCAAA
acataatataataaaaatgaagTCACTCATTTTCTTAGCAGGGATTGTTG
CAGGTATGTTTCCCCTAGATTTCGGATTAATATTTTAAgcaagtttgaat
ttttttctagtCACCCAGCTGGCatacaatgttgtttcaacgttcattta
acgttatatgacgttgtgaacgttagataaacgttgaaacaacgttgtgt
gccagctgggcagtGCTGcaaactaattttctttttatagattTCTACTC
AACCCATATTGAGGGTGTAGACATATGAaccataaaacaaaagaaagtcc
gAAAAGATTCATTCTGAcatcaaaaatcttgaagtaACAGACGAAGTGAT
CTCATGTAAAAATGCATTTTTACATGAGATCACTTCGTCTGCtacttcaa
gatttttgatgTCAGAATGAATCTTTTcggactttcttttgttttatggt
TTTTAAAATTATCGGCTGGTTATGGATTGTAGACATATGAAGTTTACTCT
TCCTTAACTTTCACCATTTTATGTTTGTGAAAAAATCTGATCCACCTCTT
ATAAAAAGAGAAATTGAACAAAACTAACATACCCTGGTCCTCAAAGTTGT
TGAAATGACTAAAACTGTCAATGTGTgtaacaaaaattgttttttttcaa
ttttagtatGCAGTGGATTATCAGCACCTGATGTCACTGGAACCACACCA
CCAGCTGTCCCATGTCCAAACACTTTATGTAAAGGAAAAGCTGATGGAAA
CTTTGCTTATGTCAACCCAACCAACTATAAACTCGTCAAGAACTATTTCG
TCCAATGTCTCGGAGGAAATGCTTATTGTCAAGCATGCTGGCCACTCAGT
TTGGAATTCAGCCCACGATGCAACCAATGTTTGTACGGTTCAAATGATGA
ATGTGTCACCACTCTTCCATTCCAACCAGCCACCACTTTCCAATGCCCAG
ACAAATGTCCCCACCGTGGACCTAAATTCACCGGAAACATTGCTGACCCA
GCTGAAAAACGACAATACGTTGCATGCTGGGAAGGAGTCACTGTTGGATG
TGTTGCTTGTCCAGGAAATTTGGAATTCAACGAAAGCGAAAATGCTTGCT
TGTTTGAAGGAAAATACATCACTGAACCAACAAAGAACTAAGCCtcatat
ttttaaataatttagataaatatttttatgaaaaccGAAATTATTTCTTC
ATTCGTACGGCTTTTTTGTATTCTCTAGGCCGTACCAAAGTTTTTCAATT
CTCTAATTGATCTTTCTATGATTTTATATTCAATCTTCAATTTCTCATTT
tcagttttcttttttccatACTTTGTCTTGCTATATTTGACTTTCAACGT
GCTTTTAAATTTGTCACTTTCTACAGCTGTTTTCTACATTGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044798	XLOC_044798	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00072136-exon-scaffold_71-1491911889:932589..932681	TCONS_00072136-exon-scaffold_71-1491911889:932589..932681	Clytia hemisphaerica	exon
TCONS_00072136-exon-scaffold_71-1510915933:932589..932681	TCONS_00072136-exon-scaffold_71-1510915933:932589..932681	Clytia hemisphaerica	exon
TCONS_00072136-exon-scaffold_71-1575043694:932589..932681	TCONS_00072136-exon-scaffold_71-1575043694:932589..932681	Clytia hemisphaerica	exon
TCONS_00072136-exon-scaffold_71-1491911889:937295..938030	TCONS_00072136-exon-scaffold_71-1491911889:937295..938030	Clytia hemisphaerica	exon
TCONS_00072136-exon-scaffold_71-1510915933:937295..938030	TCONS_00072136-exon-scaffold_71-1510915933:937295..938030	Clytia hemisphaerica	exon
TCONS_00072136-exon-scaffold_71-1575043694:937295..938030	TCONS_00072136-exon-scaffold_71-1575043694:937295..938030	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_71	supercontig	scaffold_71:932589..938030 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0925973	0	0	0	0	0	0	0.000686453	0.096809	0.0859586	176.005	23.6202	0	0	0	0.111032	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00072136 vs. Swiss-Prot (Human)

BLAST of TCONS_00072136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00072136 (transcript) - C. hemisphaerica