TCONS_00072134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072134
Unique NameTCONS_00072134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072134 ID=TCONS_00072134|Name=TCONS_00072134|organism=Clytia hemisphaerica|type=transcript|length=1243bp
GTATTGAATTGTAATGGtaatcttttgtttaaaaatcgtgaaaaaataga
aatattacCTTAATTAAGCAATAAACTTTAATTagtatttttctcttatt
tacATGCATAAATATTAAATGGAActttcaaactaaaaaaaaacagagtT
AACCCTAGAAACTATGTTAATTATTATAGACGGTTTCCAAGAAAATTGAA
CATACCTATTACATAATGCACCAAACGCATGGGAAGTCGCATTGCAAAAT
TCAAACTGAATAACGTCCCGCGGGGCTGGTCATAAGCTGTCAAGGAAAAC
ATTTATTCGGATACTTAGTTTACTTGTTACCCAGAGACTTATAACTATGG
TTGAAAACTATTGTTAATTTGAATTTAACGTGAACGCTAACTTATCGGAA
CAGCAAGATGTTCTCATTAGCGGTGAttgagaatagaccttttcataaat
tacgtcacgaacatcacttgcctcgttttgaaattattgtcgTGGTGATT
AACTCCAAGCGGAATTTATTACAACTAGTTTCTATTCATAAAATCAGTCT
GAAGGGAtatgatcaccatggaaattgtttgaatacaaggcaagtgatgt
tcgtgacgcaatttatgaaaaggtcctAGTTCAAAATCATTCGGAAAGAA
TcgaaaaagatataaaaaaacaCTCAACCGCTCACAAATACTCGAAGAAC
CAAGTTGCGATATCAAATATCAAATGTTACGAACAAATAgatccaaaaaa
ataataacaaacagTAACGAACGGTTATAGAGCTCCCATATAACGTGAAG
CCCACAAGAACCGAAATTTGGTCACGACATAACATTCTACATACTAAAAG
TAGCGTCTTATAAATCATAACAAACCAATGACAAGACTCTTTTTGATGGT
CTGTTCTTTGAGATATATCTTTGTTGACTGTGTTCTTGTCACTTGTACGA
CAGAGTATCTCTCGATAAACAGAAGTCCTTGAGTTCTCTAGATTATCATA
TGCTTAAACAGTCTTAAGACACCAACACTTGAGACGAGATATTCACATAT
ATGTGTATAAGAGTTTATTTGAAACCCAATTTCACCTATCATTAGTCCTA
GAGAAGGGTCTTTGAAGCGATTGTAAAGCCGCCCGGGCGGTCATTGGTCT
GTTTGAAGGCGATAGAGGCGGCGAAGGAGTTTTCCTTTGGTTCTGCACAG
GATGACTCTTGCTACGTATGTTGGCGTTGATGTCTGTCCTGGA
Run BLAST on NCBI

transcript from alignment at scaffold_71:884764..886066+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072134 ID=TCONS_00072134|Name=TCONS_00072134|organism=Clytia hemisphaerica|type=transcript|length=1303bp|location=Sequence derived from alignment at scaffold_71:884764..886066+ (Clytia hemisphaerica)
GTATTGAATTGTAATGGtaatcttttgtttaaaaatcgtgaaaaaataga aatattacCTTAATTAAGCAATAAACTTTAATTagtatttttctcttatt tacATGCATAAATATTAAATGGAActttcaaactaaaaaaaaacagagtT AACCCTAGAAACTATGTTAATTATTATAGACGGTTTCCAAGAAAATTGAA CATACCTATTACATAATGCACCAAACGCATGGGAAGTCGCATTGCAAAAT TCAAACTGAATAACGTCCCGCGGGGCTGGTCATAAGCTGTCAAGGAAAAC ATTTATTCGGATACTTAGTTTACTTGTTACCCAGAGACTTATAACTATGG TTGAAAACTATTGTTAATTTGAATTTAACGTGAACGCTAACTTATCGGAA CAGCAAGATGTTCTCATTAGCGGTGAttgagaatagaccttttcataaat tacgtcacgaacatcacttgcctcgttttgaaattattgtcgTGGTGATT AACTCCAAGCGGAATTTATTACAACTAGTTTCTATTCATAAAATCAGTCT GAAGGGAtatgatcaccatggaaattgtttgaatacaaggcaagtgatgt tcgtgacgcaatttatgaaaaggtcctAGTTCAAAATCATTCGGAAAGAA TcgaaaaagatataaaaaaacaCTCAACCGCTCACAAATACTCGAAGAAC CAAGTTGCGATATCAAATATCAAATGTTACGAACAAATAgatccaaaaaa ataataacaaacagTAACGAACGGTTATAGAGCTCCCATATAACGTGAAG CCCACAAGAACCGAAATTTGGTCACGACATAACATTCTACATACTAAAAG TAGCGTCTTATAAATCATAACAAACCAATGACAAGACTCTTTTTGATGGT CTGTTCTTTGAGATATATCTTTGTTGACTGTGTTCTTGTCACTTGTACGA CAGAGTATCTCTCGATAAACAGAAGTCCTTGAGTTCTCTAGATTATCATA TGCTTAAACAGTCTTAAGACACCAACACTTGAGACGAGATATTCACATAT ATGTGTATAAGAGTTTATTTGAAACCCAATTTCACCTATCATTAGTCCTA GAGAAGGGTCTTTGAAGCGATTGTAAAGCCGCCCGGGCGGTCATTGGTCT GTTTGAAGGCGATAGAGGCGGNTGAAGCGATTGTAAAGCCGCCCGGGCGG TCATTGGTCTGTTTAAAGGCGATAGAGGCGGCGAAGGAGTTTTCCTTTGG TTCTGCACAGGATGACTCTTGCTACGTATGTTGGCGTTGATGTCTGTCCT GGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044797XLOC_044797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072134-exon-scaffold_71-1491911889:884764..885921TCONS_00072134-exon-scaffold_71-1491911889:884764..885921Clytia hemisphaericaexon
TCONS_00072134-exon-scaffold_71-1510915933:884764..885921TCONS_00072134-exon-scaffold_71-1510915933:884764..885921Clytia hemisphaericaexon
TCONS_00072134-exon-scaffold_71-1575043694:884764..885921TCONS_00072134-exon-scaffold_71-1575043694:884764..885921Clytia hemisphaericaexon
TCONS_00072134-exon-scaffold_71-1491911889:885982..886066TCONS_00072134-exon-scaffold_71-1491911889:885982..886066Clytia hemisphaericaexon
TCONS_00072134-exon-scaffold_71-1510915933:885982..886066TCONS_00072134-exon-scaffold_71-1510915933:885982..886066Clytia hemisphaericaexon
TCONS_00072134-exon-scaffold_71-1575043694:885982..886066TCONS_00072134-exon-scaffold_71-1575043694:885982..886066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:884764..886066 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.341233 1.02818 0.0710137 0.434253 0.102263 0.184912 0 0 0 0 0.0605265 0 0 0 0 0 0.0682059 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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