TCONS_00072133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072133
Unique NameTCONS_00072133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072133 ID=TCONS_00072133|Name=TCONS_00072133|organism=Clytia hemisphaerica|type=transcript|length=965bp
GACCACAGTTTGCAACATCTTCAATGTTGTGACTTTTTATTAATGTTTCT
TAATATGTATGCATTCTTAAAAACGAATTTTTATATTGGGTGGTGAACTC
AAATTCAATTTTTAATGCGGTCAATCATAAATAAGAAAATTAGTAGGAAA
TACATAAACAAGAATAATAAGAGAATGAAACTTAATGAACGAGTGCAGAT
TGTCCTGCACACTTCTAGATCAATAAACCTTCCAAACATGAATTATAAAA
AAAAATGTCCAATTAAAAATTTAAAGAGAGTTCGTTTGTTAGTATCATTA
GTCTGTGTTTAGTACTTTGTAAAAGAAGAATTtacaaagaatgaaaaaaa
taattgaactatTCAAAAGCTTTCTTTTTCACTAAAGATAATAAATCTGG
AAATACAGAAGACATAAAGTGTCCTTTATCCTCATAGGAGTGAAGGTCAC
ATTCTAGATTCTTTGCCACTTCCATTTGTTCTTCCCAGGGCAAAAATGGA
TCATCTTCTGATGCAAACTGACATATCAAGCCACAATTCTCTTTGATCTT
TTGCCATTCCCAGGGTCTATTGAAATAACCACTTTTTCGTTCAAGATCAT
CTCCTAAATCAGAGGTATAAGCACTGACAAGTATAATTCCTCTAACTTTA
TTTGTTTCCGCAAACCGCATAGCTGCAGCTGCCCCACTACTATGACCAAC
AATTATAGTGCTCTCATCTACCTTCAGTTCATCTTTCATAAAAGGCAGCC
ATATTGATTCCATGGCACCTACAGGATCTGGCATATTTCTTAGATCACAA
ATAACACCACCAAGACCATTTAATTTCTTGTGTATCCAACCATACCAGTT
GGCACGGAAGACGTCACCAGCTCCATTTCCTGGTAATATCACAACATGTT
TCTGGATATCAgtcatctttgttttgataatttagGGAATTAAAAGCCTG
ATGATGATACAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_71:874967..877660+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072133 ID=TCONS_00072133|Name=TCONS_00072133|organism=Clytia hemisphaerica|type=transcript|length=2694bp|location=Sequence derived from alignment at scaffold_71:874967..877660+ (Clytia hemisphaerica)
GACCACAGTTTGCAACATCTTCAATGTTGTGACTTTTTATTAATGTTTCT
TAATATGTATGCATTCTTAAAAACGAATTTTTATATTGGGTGGTGAACTC
AAATTCAATTTTTAATGCGGTCAATCATAAATAAGAAAATTAGTAGGAAA
TACATAAACAAGAATAATAAGAGAATGAAACTTAATGAACGAGTGCAGAT
TGTCCTGCACACTTCTAGATCAATAAACCTTCCAAACATGAATTATAAAA
AAAAATGTCCAATTAAAAATTTAAAGAGAGTTCGTTTGTTAGTATCATTA
GTCTGTGTTTAGTACTTTGTAAAAGAAGAATTtacaaagaatgaaaaaaa
taattgaactatTCAAAAGCTTTCTTTTTCACTAAAGATAATAAATCTGG
AAATACAGAAGACATAAAGTGTCCTTTATCCTCATAGGAGTGAAGGTCAC
ATTCTAGATTCTTTGCCACTTCCATTTGTTCTTCCCAGGGCAAAAATGGA
TCATCTTCTGATGCAAACTGACATATCAAGCCACAATTCTCTTTGATCTT
TTGCCATTCCCAGGGTCTATTGAAATAACCACTTTTTCGTTCAAGATCAT
CTCCTAAATCAGAGGTATAAGCACTGACAAGTATAATTCCTCTAACTTTA
TTTGTTTCCGCAAACCGCATAGCTGCAGCTGCCCCACTACTATGACCAAC
AATTATAGTGCTCTCATCTACCTTCAGTTCATCTTTCATAAAAGGCAGCC
ATATTGATTCCATGGCACCTACAGGATCTGGCATATTTCTTAGATCACAA
ATAACACCACCAAGACCATTTAATTTCTTGTGTATCCAACCATACCAGTT
GGCACGGAAGACGTCACCAGCTCCATTTCCTGGTAATATCACAACATGTT
TCTGGATATCAgtcatctttgttttgataatttagGGAATTAAAAGGTCT
GGTTTTTTTTATATTGATAACTGTAGGCAGTTTCATGCTTTTCATGAAAA
TTAAAAAATTAGATATTACAAAAGAAAATTCGCAAGGGAATTCACGCAGA
CGTAGATTGAAGTATAAAAAAGTGACTAGAACTTCCTTCTGGGTATTTCC
GAGAAATAGTCTAAAATAAATAAAACAGAATCTAATTACAGTACATTGTA
TAAAACAGTAGATCAGCTAAAGTGATTTTATGATATTTTATTGTACATAG
TTATAGCTTTTAAATTGTTTTTATTATTTACGTTTTTTGTGAGATTTCTA
GCTTCCATTATAAAAAGGATATAATTTTTTGTTGATTAAGTCACGAAAGA
TGATTTTCTTTTGTGTATACCGTTAACTGCTCCAACTTGGGACTATCTGA
CAAAACATGGGACGACCATTTGGCCACCATTTCACCGAACCTCCAAAGCC
ATTTGATTTTGGATAATGAACGGTATTTTAAAAATACACATTTTCTCTTT
CGTACCGTTTAAAATCGAAATATGAAAAAAATCCGTAATGGAACACACGT
GAATGTCTGGAACGAAGAAGACCTTATTAGTGCCAAAACAATGGAgtatt
tgacgtcactcgcacgGCAAGTCGCACACTTGTTAtctgttaatcccatc
gggcgataggcggatAGGCGACGGCCGTTCtctaaaaagggcgcgctatc
agtgaaagttatcgtgacatgttatgacaaaaagtatgattgataatcTT
GGaggttatcaaaacaaatttgttgtcagaGACTTAACAgtaaagtgaaa
atacaggccagaatatgaacagtcccatgtttcaaccaacCGTCCCAAAT
TGGAGAAGTTGacggtatatattttttaaaattcacaaATAATGAacctc
tttaaaaaataaatctagTTGAAAACCTTTTGTTACAGNacggtatatat
tttttaaaattcacaaATAATGAacctctttaaaaaataaatctagTTGA
AAACCTTTTGTTACAGTAgattatattttgtacatttcttaaacaaaagg
ttagcctgggaatccaagcgttaaactttgttcacgGCCTAGTTTATAAT
ATTTTTGCTGGTTGTTTTTAAATCTTAgcactttgtgaggtgaggtattt
tttgttttttctaagattatgagcttggattcccaggctaacaCAAGGTG
AACCGGTTTCCTGATTTCTTGATAATCAAATAATTTAAACTTTCCTTTTG
TTGGATTGGGCGTCCCGCTAGtgcaaaatatctttcatgaGAGTTTACCA
TATTTCAACGCTTATTTAATCTAGATAGagaaacaaattttattttcaat
tctcTTTTGCATGCATCTCATAATTTCACGATAAAAGAACTATTTcatac
aaattattttctttaatgcGCATTGAATCAATACTCAcatatttttaatg
tcaatgaTGTCAAATTCTCAATGCGCCATGCATATTTTGTTAGTGCCTTA
TATATTTTGTCAGcctccttttcattggataaacaGTGAGGATATTATCA
CGGGTTAAATTTTAATTGTCCTCTCTAGGGAGTtagcaattttgtatttt
ttgacttGCAATTATTGATTGAATATTTATGCGTTGATAGAGCTTGTATA
TGTGTATGTATGTGTATGTTATGATGACAATattttttaaactgttttta
actgtttattttattatgtttttagCCTGATGATGATACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044796XLOC_044796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072133-exon-scaffold_71-1491911889:874967..875912TCONS_00072133-exon-scaffold_71-1491911889:874967..875912Clytia hemisphaericaexon
TCONS_00072133-exon-scaffold_71-1510915933:874967..875912TCONS_00072133-exon-scaffold_71-1510915933:874967..875912Clytia hemisphaericaexon
TCONS_00072133-exon-scaffold_71-1575043694:874967..875912TCONS_00072133-exon-scaffold_71-1575043694:874967..875912Clytia hemisphaericaexon
TCONS_00072133-exon-scaffold_71-1491911889:877642..877660TCONS_00072133-exon-scaffold_71-1491911889:877642..877660Clytia hemisphaericaexon
TCONS_00072133-exon-scaffold_71-1510915933:877642..877660TCONS_00072133-exon-scaffold_71-1510915933:877642..877660Clytia hemisphaericaexon
TCONS_00072133-exon-scaffold_71-1575043694:877642..877660TCONS_00072133-exon-scaffold_71-1575043694:877642..877660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:874967..877660 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.6369	45.8627	33.6499	30.4205	12.1791	6.81236	0	0.29804	7.99602	0.81632	8.14869	11.7634	5.10661	2.26264	15.1628	10.5645	0.274056	3.90128	0	0	6.24935	3.35342	15.0595	12.0402	5.95277	9.6926	8.56363	12.2022	0	0.167822
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR010662Hydrolase_RBBP9/YdeN
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00072133 vs. Swiss-Prot (Human)
Match: RBBP9 (Putative hydrolase RBBP9 OS=Homo sapiens GN=RBBP9 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 4.194e-76
Identity = 107/173 (61.85%), Postives = 130/173 (75.14%), Query Frame = -2 
Query:  377 VVILPGNGAGDVFRANWYGWIHKKLNGLGGVICDLRNMPDPVGAMESIWLPFMKDELKVDESTIIVGHSSGAAAAMRFAETNKVRGIILVSAYTSDLGDDLERKSGYFNRPWEWQKIKENCGLICQFASEDDPFLPWEEQMEVAKNLECDLHSYEDKGHFMSSVFPDLLSLVK 895
             VI+PGNG GDV    WYGW+ K+L  + G  C  +NMPDP+ A ESIWLPFM+ EL  DE TII+GHSSGA AAMR+AET++V  I+LVSAYTSDLGD+ ER SGYF RPW+W+KIK NC  I QF S DDPFLPW+EQ EVA  LE  LH + D GHF ++ F +L+++VK
Sbjct:    7 AVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFMETELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVK 179
The following BLAST results are available for this feature:
BLAST of TCONS_00072133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBBP94.194e-7661.85Putative hydrolase RBBP9 OS=Homo sapiens GN=RBBP9 ... [more]
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