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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072130 ID=TCONS_00072130|Name=TCONS_00072130|organism=Clytia hemisphaerica|type=transcript|length=1139bp
TTTGAATATTCTACATTTTGTTTTCCACTTGCTGTTGGCAAAACTTTTAC
ATTAGAAGATGGAAAAAGAAAAGCTTGAGAGTTTTGACGAAATGGAATAA
CCAAAAATAGCAACAGCCACAACGTCATCATGGAGAAACTTAAAATAGCT
TGTGTATTTTTACATCTCATTGTAACTTTAACTTTAGCATTAGAGCAAAA
TGGGGCGGTTTATAGAGAAGAAATTACAAACGCTACAGTCGTCAACAAAA
CAGAGTTTCATACAGACACGGTCAACCATAAGCTTCATTGCCTTATGAGA
CCATATAGTGTTTGTTTCATTGTGGAAGTTACTGAAACAGTGCCTGACAA
AGAATACCAATGTCGTTTCTACGTCGGAAAATTTGTGAGTGTTGAAACAG
CGCCTGGGCTAGCAACCATCTATGAATCATATGCTGCTTGCTCGACTCAT
CTATGTCAAGACCTACAGGGACCTACACATGATACAGACGGTGTCTATGC
TATAAAGTTAGGTGGGAGCCCGATCAAGGTTTGGTGTGACATGACTCAGA
ATGATGGTGGATGGACGACCATACAACGTCGCATTGATGGTTCGGTCAAT
TTCGAAAGATTGTGGCAAGACTATAAAGTTGGATTTGGAGAAGCTTCAGG
GAATTATTGGTTAGGTAACGACCATCTTCATCATATCACTGACCACTACC
AAAATGTTTTGGTTCGTATTAAAGTCTTGGCGCCTGATGGAGACAGAGCT
GAAATCATCCAGGAGAATTTTTATGTTGCTGATGAAGCGAATTGGTACAG
AGTTCGAACTGGGACATTCGTTTCAGGACATAGTGGTTTGAAAAATGATT
GGAACTACCATAATAATGTTGGCTTCACTACAACAGACGTGGATAATGAT
AACAGCGATGAAAATTGTGCAGAAAGGAATCGAGGTGGATTTTGGTATAC
TGGATGTGTCCGCTTTAATGCTAATGGAATATATGGTCGCAATGATAATA
AGGGAATTATCTCCAGATCTTTCAAAACCCTGGTGTCAATGAAGGAAGTC
TCTACTGCCGTCAAAAGGAAAGACTGAAAGGTGGACATCATTTGAAATGG
ATCATATTCAATTGGAATGATTATAATCGGGTTTAAACA Run BLAST on NCBI transcript from alignment at scaffold_71:849100..852659+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072130 ID=TCONS_00072130|Name=TCONS_00072130|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_71:849100..852659+ (Clytia hemisphaerica)
TTTGAATATTCTACATTTTGTTTTCCACTTGCTGTTGGCAAAACTTTTAC
ATTAGAAGATGGAAAAAGAAAAGCTTGAGAGTTTTGACGAAATGGAATAA
CCAAAAATAGCAACAGCCACAACGTCATCATGGAGAAACTTAAAATAGCT
TGTGTATTTTTACATCTCATTGTAACTTTAACTTTAGCATTAGAGCAAAA
TGGGGCGGTTTATAGAGAAGAAATTACAAACGCTACAGTCGTCAACAAAA
CAGAGTTTCATACAGACACGGTCAACCATAAGCTTCATTGCCTTATGAGA
CCATATAGTGTTTGTTTCATTGTGGAAGTTACTGAAACAGTGCCTGACAA
AGAATACCAATGTCGTTTCTACGTCGGAAAATTTGTGAGTGTTGAAACAG
CGCCTGGGCTAGCAACCATCTATGAATCATATGCTGCTTGCTCGACTCAT
CTATGTCAAGACCTACAGGGACCTACACATGATACAGACGGTGTCTATGC
TATAAAGTTAGGTGGGAGCCCGATCAAGGTTTGGTGTGACATGACTCAGA
ATGATGGTGGATGGACGACCATACAACGTCGCATTGATGGTTCGGTCAAT
TTCGAAAGATTGTGGCAAGACTATAAAGTTGGATTTGGAGAAGCTTCAGG
GAATTATTGGTTAGGTAACGACCATCTTCATCATATCACTGACCACTACC
AAAATGTTTTGGTTCGTATTAAAGTCTTGGCGCCTGATGGAGACAGAGCT
GAAATCATCCAGGAGAATTTTTATGTTGCTGATGAAGCGAATTGGTACAG
AGTTCGAACTGGGACATTCGTTTCAGGACATAGTGGTTTGAAAAATGATT
GGAACTACCATAATAATGTTGGCTTCACTACAACGTAAGCTATTTCAAAT
TTCGTTCATAGTGGTAAAGGTTTGCCGAAGTCGAACCGAAAATATCTAAC
CCAACGAAGTTAGGAGGGGATGCCATAAATATTTCACATAAATATTCCCA
CTTCTTAAAAACAAAGATAATTTTCCCTTAAAATCGCTAGTTTAGGATCG
ATAGATGTATAGTTtcgcaagctagacgactaaatTTAATAGAGAAGGTA
AAATGATGGTAAGGAAAACCTAGAGGACAATATTATACAAACTAACATTA
TCACATATTAATTATCGCATTATCATAAAACATCTAAATATTCaaaaggt
aaaatataaatatactagccggtacccggcgtcgcacgccggtttagctg
tttgctgaacgcatttaaagtcctttgagatgttgggaagatggcttaaa
cacgatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagattttttt
tctcgcttcgctcgcgttatatttgccgtagttcttgatgtttaggaaaa
ctttgatgtcaagataagcggagtgaaataatagacatgacacccTATTC
TTCGAAAAGAGGCAGCCCGGGGGAGGggatacttaggcaagagaagggta
taggtatgtgccggccttaagtgtgcctttttgaaacatggcagtttgaa
aaatcggaaaataaaacttcagtcccactgaatcttttttgcccccagaa
agatagaaatttggtcaaattagttccaaaaagtgaattaaaattcacac
aatttcccttgtttcttctcctctttattctgctaagggtccgaggggca
gggccaaaagtcagctcgcaaccatagtcccccggaaggcagctaggaca
cgcagacaaaaaagcgtgatagatagcgcaattttatattgtttttttat
aaaataacttcgtcataacttcaataatctttcaaattcaacaatgactt
agatttacagcaaaatgattatcgacatacatgtttaaaggtccgttttt
acgaagaaagaattctagtttttgcCGCCTTTTTACCGCCTTTTACCGCC
TACCgcatttttaatgttgctgttgttctaacaaacttgttatgtgattc
ttgtgttttattttatatttgttcttttctttaacagattctgtttaaaa
aatttcttNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatcaaaacaaagt
ctttataaaacggcgcgaatatcgttaaacaaatttgtggagcaagaaca
aaataaaagtcatcttttaaaagaacaaaacattgctttcgaaaacgaaa
gtgacacacaaaaaacaaaccaacaaagaaacacacatacagactacggc
tattaatatatagatgaatATACATCACCGAAGGCTAATAAATCCAATAG
CAAACGAAATCCTAATgaatatgttttattatatgccCAGAGacgaaaac
aaaacataaatacTCTATTTTGTAGAGAGATTCACATAAAAAGCTCACAC
AAAGcgaacattcgaatgtttttcctTCTAATTGTTTTTTAATGACTTAT
ATTCACGAAACTTACAATTGAACTATTATGACTTTCtttaacaacaacaa
aataaaagtaacaaaaagtcaattttcgaaTGCAAAATTATATATGCCCT
TTAATTATTCTTCTCAATTTTCAACAGAAGTAGCCTGAAATGTGATCTTT
GTTtgaacgaaaaatttgaaatctcttTGCGTAAAGACAATTTACTGAAC
TGTAGATCTGAACTTATCTCAAAATGCCGGCACATAAACAAACACTTACT
CGAAAACTTCGATTCTAAtgattgacgtcaattttaatACATAGTAGgtt
tcgttggttattggattcaCATTAACCTTCGATGATCCTGAAATTGTACT
ATCGGCTTCCCCTCGGCTTTACCTATTGATATCTGCTTATTATCCTAGTT
AGCTCCAGTTTAAACGTATATTATCTCCGGCTTtcggaaaaattcaaaat
tgacctTGCCTTTACAGCAAATTTGATTGAGCTGACCTTAAATTCTTAAT
TTCAGAGACGTGGATAATGATAACAGCGATGAAAATTGTGCAGAAAGGAA
TCGAGGTGGATTTTGGTATACTGGATGTGTCCGCTTTAATGCTAATGGAA
TATATGGTCGCAATGATAATAAGGGAATTATCTCCAGATCTTTCAAAACC
CTGGTGTCAATGAAGGAAGTCTCTACTGCCGTCAAAAGGAAAGACTGAAA
GGTGGACATCATTTGAAATGGATCATATTCAATTGGAATGATTATAATCG
GGTTTAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072130-exon-scaffold_71-1491911889:849100..849983 | TCONS_00072130-exon-scaffold_71-1491911889:849100..849983 | Clytia hemisphaerica | exon |
| TCONS_00072130-exon-scaffold_71-1510915933:849100..849983 | TCONS_00072130-exon-scaffold_71-1510915933:849100..849983 | Clytia hemisphaerica | exon |
| TCONS_00072130-exon-scaffold_71-1575043694:849100..849983 | TCONS_00072130-exon-scaffold_71-1575043694:849100..849983 | Clytia hemisphaerica | exon |
| TCONS_00072130-exon-scaffold_71-1491911889:852405..852659 | TCONS_00072130-exon-scaffold_71-1491911889:852405..852659 | Clytia hemisphaerica | exon |
| TCONS_00072130-exon-scaffold_71-1510915933:852405..852659 | TCONS_00072130-exon-scaffold_71-1510915933:852405..852659 | Clytia hemisphaerica | exon |
| TCONS_00072130-exon-scaffold_71-1575043694:852405..852659 | TCONS_00072130-exon-scaffold_71-1575043694:852405..852659 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:849100..852659 + |
Blast
BLAST of TCONS_00072130 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 8.967e-36 Identity = 76/178 (42.70%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 454 CQDLQGPTHDTDGVYAIKLGG-SPIKVWCDMTQNDGGWTTIQRRIDGSVNFERLWQDYKVGFGEASGNYWLGNDHLHHITDHYQNVLVRIKVLAPDGDRAEIIQENFYVADEANWYRVRTGTFVSGHSGLKNDWNYHNNVGFTTTDVDNDNSDENCAERNRGGFWYTGCVRFNANGIY 984
C+DL + G + I L P+ V CDM + GGWT QRR+DGSV+F R W YK GFG G +WLGND++H +T + L R+ ++ +G+ ++F VADEA Y++ G FV G +G N HNN F+T D DND S NCAE+ +G +WY C N NG+Y
Sbjct: 118 CKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSEL-RVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAG--NSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLY 292
The following BLAST results are available for this feature:
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