TCONS_00072120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072120
Unique NameTCONS_00072120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072120 ID=TCONS_00072120|Name=TCONS_00072120|organism=Clytia hemisphaerica|type=transcript|length=375bp
CAATGGACAAGAAGATAAGAACGATGGACAAGAAGATATGGAGATATGCG
AGGAGGAAGTTCAacacaatcaaaacaaaatgGCACAAAAACAAGTTGAT
AACCATCAAACTTCATTTGGTAGCAATGCCAATGACAGTTCCAATGCTCA
ATATGCTTTGAGCTTTCCAAACGCAAACACCCAAGGTATCAGTGAAAACA
CTAAAGTTGATAATCAGCACATTGATAACGATACAGAAATGGCTGAAGAG
AAGCCTAGTGAGGAAGGACAAAACAGCAAAATTGTTGGCAAGGAAGAAAA
CAAATCAGAGAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAATCTG
AACTATCAAAACTTAAAGAAGAACG
Run BLAST on NCBI

transcript from alignment at scaffold_71:634544..637128+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072120 ID=TCONS_00072120|Name=TCONS_00072120|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at scaffold_71:634544..637128+ (Clytia hemisphaerica)
CAATGGACAAGAAGATAAGAACGATGGACAAGAAGATATGGAGATATGCG AGGAGGAAGTTCAacacaatcaaaacaaaatggtgaaattagttttattt tttttcagtgattaaTACAATACTTGCAAACTTTTAAAGTAGTAGATATA AACAGTCTAGCCCCACAGTATCAGGTTTAACATCATATAGtcaataaaat ataaaacacTGCATAGTActgcaaatagggaaatttcagtTGGTCGTTAA ATTTTTGAGTGTAACGAACAGAGGGTGTGGCGGAACCATCTTAGAAAATT TTGTAGGTCATTCctttagattggctaaacacctattttaATTTAAGTTA ACTGTTCCTCTTTTAATTAGAAGCGCTATTAAGTATTTATCTAAGCctct aatcttcaaattttaactgGACAAAATTAAAAACTGAGCCTCAGAATGAC AGgtagaaactacaaaatgaTCTGTAATTACTGGTCACTGGctgttattt gcagcactgacaTGCTATATCCACTGTAATCTCTTACTACTTGACTGGAT CTGGCTTCCTATAAAAAAGGAAGTTGTTATGACAGACTAGTCAACTTTAA AGCTGAACATACTTCCATGACAAATCTGTGAGTATCTAGCCTATCTAGTG TGTAAATGAATATGATATCTTGCTTAGATGCTCAGACCTTAACAGACAGG AAAAAATGAATACAAGACCTAAACATTCAATATTTAATTGCTTTACATTG CTGTCGTTTAAAATTTTTATGTACTATTTTTATATTACaataatatgatt tttttactaTTTAAATTCTTTATTTAAGGCACAAAAACAAGTTGATAACC ATCAAACTTCATTTGGTAGCAATGCCAATGACAGTTCCAATGCTCAATAT GCTTTGAGCTTTCCAAACGCAAAGTAAGTCTTAGTAAAAGTACATGtgta attttttagtttttgaaataaaataaaaactacaATAAGATAATAAATTT GGTAATaacttatatattttttaacctATGCATTTACACTTTACATCTAT CTCACTTGTTAGGTCTTTTTGGGACGTACAACTTTTATTGCATATAAATT TATATCATTCAATCTTAGCACCCAAGGTATCAGTGAAAACACTAAATGTA AGAATCAGCACATTGATAACGATACAGAAATTGCTGAAGAGAAGCCTAGT GAGGAAGGACAAAACAGCAAAATTGTTGGCAAggaagaaaataaatcaga gAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAATCTGAACTATCAA AGTAAGAActacattttttgtttacttataCCGATTTTATGAATATTGCA CCAATAACACCATCAGCAGTTGCAGTATGGTTATTCAGAAATTATTGCTA ATTCTGAATGAAAATTGTGTCATCACAAGCgacttcaaattcaaaatgga aCGCTCCAATGAAACGTTCATTGAATCTAGTTTAAGAACCTATGCATTTA CACTTTTATATATCTATCTCAGTTATTAGTTCGTtgagcctcaagttcct tataaacgtgttctttataaaaaaacgtgtattacacTAATAACACCATC AGTAGTTGCAGTAGGGTTATTCAGAAATTATTGCTAATTCTGAATGAAAA TTGTGTCATCACAAGCgacttcaaattcaaaatggaaTGCTCCAATGAAT CGTTCATTGAATCTAGCTTTAAAGAACCTATGCATTTCCACTTTTAAGTA TATATCTATCTCAGTTATAAATTAGTTTGTTGTGGGATATACCAATTTTA TTGCATATAGATTTATATCATTCAATCTTAGCACCCAAGGTATCAGTGAA AACACTAAAGTTGATAATCAGCACATTGATAACGATACAGAAATGGCTGA AGAGAAGCCTAGTGAGGAAGGACAAAACAGCAAAATTGTTGGCAAGGAAG AAAACAAATCAGAGAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAA TCTGAACTATCAAAGTAAGAActacattttttgtttactcagtTAATACT ATAAAACATTCTAGAACGTTCTCATTTACGTTCTCATCagtatacatttt ttatttactaaTACTAATTTTATGAGTATTACACCAATAACACCATCAGT AGTTACAATATGGTTATTCAGAAATTATTGctaatttttgaatgaaaatt gtgtCATCACAAGCAACCTTCAATACAAAACGGAACGTTCCAATGAATTG GTCATTAAATTATTCaatcattctattttatttactAGTTTAAGAACGTT ACTGAacattcaaaatgtttttcagACGTTCTTATCAAGTTGAATTCAAC CTTTGAACGCTAAGGATTGTTCTGGAGTGGAATGTTTGAGAACAACTGAA AACGTTCTGGAACATCCAGGAaagctatgggatgggtttgcAAACTTTCA GAATGTTCCATTTCATTTGTACTTTAAATCTTTTGTGATGACACAATTGT CCTTAACTCGATGAATATAGCTGTGATATACCATTGTTTCTAGCCTCTTA TTTATGTACTTTATTGGTAGACTTAAAGAAGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044791XLOC_044791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072120-exon-scaffold_71-1491911889:634544..634625TCONS_00072120-exon-scaffold_71-1491911889:634544..634625Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1510915933:634544..634625TCONS_00072120-exon-scaffold_71-1510915933:634544..634625Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1575043694:634544..634625TCONS_00072120-exon-scaffold_71-1575043694:634544..634625Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1491911889:635372..635466TCONS_00072120-exon-scaffold_71-1491911889:635372..635466Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1510915933:635372..635466TCONS_00072120-exon-scaffold_71-1510915933:635372..635466Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1575043694:635372..635466TCONS_00072120-exon-scaffold_71-1575043694:635372..635466Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1491911889:636375..636557TCONS_00072120-exon-scaffold_71-1491911889:636375..636557Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1510915933:636375..636557TCONS_00072120-exon-scaffold_71-1510915933:636375..636557Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1575043694:636375..636557TCONS_00072120-exon-scaffold_71-1575043694:636375..636557Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1491911889:637114..637128TCONS_00072120-exon-scaffold_71-1491911889:637114..637128Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1510915933:637114..637128TCONS_00072120-exon-scaffold_71-1510915933:637114..637128Clytia hemisphaericaexon
TCONS_00072120-exon-scaffold_71-1575043694:637114..637128TCONS_00072120-exon-scaffold_71-1575043694:637114..637128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:634544..637128 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.597097 0.369963 0.452568 3.81315 3.33147 2.62618 1.41461 0.368901 3.43648 0.510971 1.89736 3.9097 6.51232 0.849796 1.98223 0 0.454303 4.99834 5.94719 2.65494 0 0.80503 3.1512 42.7703 38.8023 4.99926 0 2.20319 2.91294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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